RNA–Protein interactions for RNA: ENST00000619079.1

UPF3A-212, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 2,423 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-212ENST00000619079 WASH2PQ6VEQ5 465 aa10.23□□□□□ -0.77
UPF3A-212ENST00000619079 C3P1Q6ZMU1 363 aa10.23□□□□□ -0.77
UPF3A-212ENST00000619079 SLC39A11Q8N1S5 342 aa10.23□□□□□ -0.77
UPF3A-212ENST00000619079 CLDN19Q8N6F1 224 aa10.23□□□□□ -0.77
UPF3A-212ENST00000619079 ARIH2OSQ8N7S6 290 aa10.23□□□□□ -0.77
UPF3A-212ENST00000619079 OR2T35Q8NGX2 323 aa10.23□□□□□ -0.77
UPF3A-212ENST00000619079 ZNF582Q96NG8 517 aaPredicted RBP10.23□□□□□ -0.77
UPF3A-212ENST00000619079 SPON2Q9BUD6 331 aa10.23□□□□□ -0.77
UPF3A-212ENST00000619079 BOCQ9BWV1 1114 aa10.23□□□□□ -0.77
UPF3A-212ENST00000619079 OSGEPL1Q9H4B0 414 aa10.23□□□□□ -0.77
UPF3A-212ENST00000619079 C1GALT1Q9NS00 363 aa10.23□□□□□ -0.77
UPF3A-212ENST00000619079 IMP3Q9NV31 184 aaKnown RBP10.23□□□□□ -0.77
UPF3A-212ENST00000619079 SPATA6Q9NWH7 488 aaPredicted RBP10.23□□□□□ -0.77
UPF3A-212ENST00000619079 ASB6Q9NWX5 421 aa10.23□□□□□ -0.77
UPF3A-212ENST00000619079 SLC39A1Q9NY26 324 aa10.23□□□□□ -0.77
UPF3A-212ENST00000619079 MARCH2Q9P0N8 246 aa10.23□□□□□ -0.77
UPF3A-212ENST00000619079 RHCGQ9UBD6 479 aa10.23□□□□□ -0.77
UPF3A-212ENST00000619079 SLC22A23A1A5C7 686 aa10.22□□□□□ -0.77
UPF3A-212ENST00000619079 ZNF98A6NK75 572 aa10.22□□□□□ -0.77
UPF3A-212ENST00000619079 CACNB4O00305 520 aaPredicted RBP10.22□□□□□ -0.77
UPF3A-212ENST00000619079 ABCD4O14678 606 aa10.22□□□□□ -0.77
UPF3A-212ENST00000619079 PRODHO43272 600 aa10.22□□□□□ -0.77
UPF3A-212ENST00000619079 PTP4A3O75365 173 aa10.22□□□□□ -0.77
UPF3A-212ENST00000619079 IGLV3-27P01718 113 aa10.22□□□□□ -0.77
UPF3A-212ENST00000619079 ANXA4P09525 319 aaPredicted RBP10.22□□□□□ -0.77
UPF3A-212ENST00000619079 ARAFP10398 606 aa10.22□□□□□ -0.77
UPF3A-212ENST00000619079 TACR2P21452 398 aa10.22□□□□□ -0.77
UPF3A-212ENST00000619079 IDSP22304 550 aa10.22□□□□□ -0.77
UPF3A-212ENST00000619079 ITPKAP23677 461 aa10.22□□□□□ -0.77
UPF3A-212ENST00000619079 ACRV1P26436 265 aa10.22□□□□□ -0.77
UPF3A-212ENST00000619079 MAOBP27338 520 aa10.22□□□□□ -0.77
UPF3A-212ENST00000619079 AOAHP28039 575 aa10.22□□□□□ -0.77
UPF3A-212ENST00000619079 DGKEP52429 567 aa10.22□□□□□ -0.77
UPF3A-212ENST00000619079 ERVK-21P61565 698 aa10.22□□□□□ -0.77
UPF3A-212ENST00000619079 C2orf80Q0P641 193 aa10.22□□□□□ -0.77
UPF3A-212ENST00000619079 MAP4K2Q12851 820 aa10.22□□□□□ -0.77
UPF3A-212ENST00000619079 CHIT1Q13231 466 aa10.22□□□□□ -0.77
UPF3A-212ENST00000619079 NFATC2Q13469 925 aa10.22□□□□□ -0.77
UPF3A-212ENST00000619079 GPM6BQ13491 265 aa10.22□□□□□ -0.77
UPF3A-212ENST00000619079 OPCMLQ14982 345 aa10.22□□□□□ -0.77
UPF3A-212ENST00000619079 SEC23BQ15437 767 aa10.22□□□□□ -0.77
UPF3A-212ENST00000619079 HECTD3Q5T447 861 aa10.22□□□□□ -0.77
UPF3A-212ENST00000619079 PYHIN1Q6K0P9 492 aa10.22□□□□□ -0.77
UPF3A-212ENST00000619079 FUT10Q6P4F1 479 aa10.22□□□□□ -0.77
UPF3A-212ENST00000619079 FAM151BQ6UXP7 276 aa10.22□□□□□ -0.77
UPF3A-212ENST00000619079 UNC5DQ6UXZ4 953 aa10.22□□□□□ -0.77
UPF3A-212ENST00000619079 KRT74Q7RTS7 529 aa10.22□□□□□ -0.77
UPF3A-212ENST00000619079 KIAA0907Q7Z7F0 614 aaPredicted RBP10.22□□□□□ -0.77
UPF3A-212ENST00000619079 CLRN3Q8NCR9 226 aa10.22□□□□□ -0.77
UPF3A-212ENST00000619079 SIPA1Q96FS4 1042 aa10.22□□□□□ -0.77
UPF3A-212ENST00000619079 SLC12A9Q9BXP2 914 aa10.22□□□□□ -0.77
UPF3A-212ENST00000619079 ASB8Q9H765 288 aa10.22□□□□□ -0.77
UPF3A-212ENST00000619079 GPATCH2Q9NW75 528 aa10.22□□□□□ -0.77
UPF3A-212ENST00000619079 CLCA2Q9UQC9 943 aa10.22□□□□□ -0.77
UPF3A-212ENST00000619079 COL4A6Q14031 1691 aa10.22□□□□□ -0.77
UPF3A-212ENST00000619079 LOC105369274A0A096LPK9 316 aa10.22□□□□□ -0.77
UPF3A-212ENST00000619079 GABRPO00591 440 aa10.22□□□□□ -0.77
UPF3A-212ENST00000619079 RB1P06400 928 aa10.22□□□□□ -0.77
UPF3A-212ENST00000619079 H1F0P07305 194 aaKnown RBP10.22□□□□□ -0.77
UPF3A-212ENST00000619079 LINC00271P0C7V0 271 aa10.22□□□□□ -0.77
UPF3A-212ENST00000619079 ELAVL4P26378 380 aaKnown RBP10.22□□□□□ -0.77
UPF3A-212ENST00000619079 MTNR1BP49286 362 aa10.22□□□□□ -0.77
UPF3A-212ENST00000619079 VSX2P58304 361 aaPredicted RBP10.22□□□□□ -0.77
UPF3A-212ENST00000619079 CRYZQ08257 329 aaKnown RBP10.22□□□□□ -0.77
UPF3A-212ENST00000619079 ACSM1Q08AH1 577 aa10.22□□□□□ -0.77
UPF3A-212ENST00000619079 GSG1Q2KHT4 349 aa10.22□□□□□ -0.77
UPF3A-212ENST00000619079 CYP27C1Q4G0S4 372 aa10.22□□□□□ -0.77
UPF3A-212ENST00000619079 ARMC12Q5T9G4 340 aa10.22□□□□□ -0.77
UPF3A-212ENST00000619079 HBMQ6B0K9 141 aa10.22□□□□□ -0.77
UPF3A-212ENST00000619079 RGS7BPQ6MZT1 257 aaPredicted RBP10.22□□□□□ -0.77
UPF3A-212ENST00000619079 LRFN4Q6PJG9 635 aa10.22□□□□□ -0.77
UPF3A-212ENST00000619079 SLC36A4Q6YBV0 504 aa10.22□□□□□ -0.77
UPF3A-212ENST00000619079 TMEM91Q6ZNR0 172 aa10.22□□□□□ -0.77
UPF3A-212ENST00000619079 UBE2R2Q712K3 238 aaPredicted RBP10.22□□□□□ -0.77
UPF3A-212ENST00000619079 BCDIN3DQ7Z5W3 292 aaKnown RBP10.22□□□□□ -0.77
UPF3A-212ENST00000619079 OAFQ86UD1 273 aa10.22□□□□□ -0.77
UPF3A-212ENST00000619079 OR4N4Q8N0Y3 316 aa10.22□□□□□ -0.77
UPF3A-212ENST00000619079 LINC00471Q8N535 108 aa10.22□□□□□ -0.77
UPF3A-212ENST00000619079 LINC00469Q8N7U9 141 aa10.22□□□□□ -0.77
UPF3A-212ENST00000619079 BCL7CQ8WUZ0 217 aaPredicted RBP10.22□□□□□ -0.77
UPF3A-212ENST00000619079 C11orf24Q96F05 449 aaPredicted RBP10.22□□□□□ -0.77
UPF3A-212ENST00000619079 AHCYL2Q96HN2 611 aaKnown RBP10.22□□□□□ -0.77
UPF3A-212ENST00000619079 FOPNLQ96NB1 174 aa10.22□□□□□ -0.77
UPF3A-212ENST00000619079 PKP4Q99569 1192 aa10.22□□□□□ -0.77
UPF3A-212ENST00000619079 RNF32Q9H0A6 362 aa10.22□□□□□ -0.77
UPF3A-212ENST00000619079 SERHL2Q9H4I8 314 aa10.22□□□□□ -0.77
UPF3A-212ENST00000619079 BRF2Q9HAW0 419 aa10.22□□□□□ -0.77
UPF3A-212ENST00000619079 MARCH5Q9NX47 278 aa10.22□□□□□ -0.77
UPF3A-212ENST00000619079 PPIEQ9UNP9 301 aaKnown RBP10.22□□□□□ -0.77
UPF3A-212ENST00000619079 COPS3Q9UNS2 423 aa10.22□□□□□ -0.77
UPF3A-212ENST00000619079 PRSS21Q9Y6M0 314 aa10.22□□□□□ -0.77
UPF3A-212ENST00000619079 TDRD15B5MCY1 1934 aaKnown RBP10.21□□□□□ -0.77
UPF3A-212ENST00000619079 GREB1Q4ZG55 1949 aa10.21□□□□□ -0.77
UPF3A-212ENST00000619079 TRBV5-4A0A0C4DH59 114 aa10.21□□□□□ -0.77
UPF3A-212ENST00000619079 FAM227AF5H4B4 570 aa10.21□□□□□ -0.77
UPF3A-212ENST00000619079 EEF1E1O43324 174 aaKnown RBP10.21□□□□□ -0.77
UPF3A-212ENST00000619079 NCR1O76036 304 aa10.21□□□□□ -0.77
UPF3A-212ENST00000619079 H2AFB2P0C5Z0 115 aa10.21□□□□□ -0.77
UPF3A-212ENST00000619079 RPL3P39023 403 aaKnown RBP10.21□□□□□ -0.77
UPF3A-212ENST00000619079 HOXA1P49639 335 aaPredicted RBP10.21□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms