RNA–Protein interactions for RNA: ENST00000616140.1

CPSF1-212, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,494 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-212ENST00000616140 PTGER1P34995 402 aa13.3□□□□□ -0.28
CPSF1-212ENST00000616140 PTPRRQ15256 657 aa13.3□□□□□ -0.28
CPSF1-212ENST00000616140 SMN1Q16637 294 aaKnown RBP13.3□□□□□ -0.28
CPSF1-212ENST00000616140 TAS1R1Q7RTX1 841 aa13.3□□□□□ -0.28
CPSF1-212ENST00000616140 DGLUCYQ7Z3D6 616 aa13.3□□□□□ -0.28
CPSF1-212ENST00000616140 ZFP90Q8TF47 636 aa13.3□□□□□ -0.28
CPSF1-212ENST00000616140 THAP3Q8WTV1 239 aaPredicted RBP13.3□□□□□ -0.28
CPSF1-212ENST00000616140 CCDC32Q9BV29 185 aa13.3□□□□□ -0.28
CPSF1-212ENST00000616140 SLC17A9Q9BYT1 436 aa13.3□□□□□ -0.28
CPSF1-212ENST00000616140 HCFC1R1Q9NWW0 138 aa13.3□□□□□ -0.28
CPSF1-212ENST00000616140 CLEC4EQ9ULY5 219 aa13.3□□□□□ -0.28
CPSF1-212ENST00000616140 CHP2O43745 196 aa13.3□□□□□ -0.28
CPSF1-212ENST00000616140 NARSO43776 548 aaKnown RBP13.3□□□□□ -0.28
CPSF1-212ENST00000616140 PRKCAP17252 672 aa13.3□□□□□ -0.28
CPSF1-212ENST00000616140 HOXD9P28356 352 aaPredicted RBP13.3□□□□□ -0.28
CPSF1-212ENST00000616140 GRK5P34947 590 aa13.3□□□□□ -0.28
CPSF1-212ENST00000616140 PLAG1Q6DJT9 500 aa13.3□□□□□ -0.28
CPSF1-212ENST00000616140 TMEM225Q6GV28 225 aa13.3□□□□□ -0.28
CPSF1-212ENST00000616140 TMEM53Q6P2H8 277 aa13.3□□□□□ -0.28
CPSF1-212ENST00000616140 BORAQ6PGQ7 559 aa13.3□□□□□ -0.28
CPSF1-212ENST00000616140 CCDC54Q8NEL0 328 aa13.3□□□□□ -0.28
CPSF1-212ENST00000616140 KLF16Q9BXK1 252 aaPredicted RBP13.3□□□□□ -0.28
CPSF1-212ENST00000616140 NAA50Q9GZZ1 169 aaKnown RBP13.3□□□□□ -0.28
CPSF1-212ENST00000616140 MTHFD2LQ9H903 347 aaPredicted RBP13.3□□□□□ -0.28
CPSF1-212ENST00000616140 OR5K4A6NMS3 321 aa13.29□□□□□ -0.28
CPSF1-212ENST00000616140 E2F3O00716 465 aa13.29□□□□□ -0.28
CPSF1-212ENST00000616140 HMGN2P05204 90 aaKnown RBP13.29□□□□□ -0.28
CPSF1-212ENST00000616140 SOX3P41225 446 aa13.29□□□□□ -0.28
CPSF1-212ENST00000616140 MAGEA12P43365 314 aa13.29□□□□□ -0.28
CPSF1-212ENST00000616140 SUOXP51687 545 aa13.29□□□□□ -0.28
CPSF1-212ENST00000616140 MAP4K2Q12851 820 aa13.29□□□□□ -0.28
CPSF1-212ENST00000616140 PNCKQ6P2M8 343 aa13.29□□□□□ -0.28
CPSF1-212ENST00000616140 ARHGAP11AQ6P4F7 1023 aa13.29□□□□□ -0.28
CPSF1-212ENST00000616140 GPR149Q86SP6 731 aa13.29□□□□□ -0.28
CPSF1-212ENST00000616140 FOXJ1Q92949 421 aa13.29□□□□□ -0.28
CPSF1-212ENST00000616140 SAMD8Q96LT4 415 aa13.29□□□□□ -0.28
CPSF1-212ENST00000616140 PTGES2Q9H7Z7 377 aa13.29□□□□□ -0.28
CPSF1-212ENST00000616140 RNF121Q9H920 327 aa13.29□□□□□ -0.28
CPSF1-212ENST00000616140 DMRT3Q9NQL9 472 aa13.29□□□□□ -0.28
CPSF1-212ENST00000616140 MRPL15Q9P015 296 aaKnown RBP13.29□□□□□ -0.28
CPSF1-212ENST00000616140 CYP8B1Q9UNU6 501 aa13.29□□□□□ -0.28
CPSF1-212ENST00000616140 CSNK1G3Q9Y6M4 447 aa13.29□□□□□ -0.28
CPSF1-212ENST00000616140 RNASET2O00584 256 aaKnown RBP13.29□□□□□ -0.28
CPSF1-212ENST00000616140 PLGP00747 810 aaPredicted RBP13.29□□□□□ -0.28
CPSF1-212ENST00000616140 GGT2P36268 569 aa13.29□□□□□ -0.28
CPSF1-212ENST00000616140 WNT4P56705 351 aa13.29□□□□□ -0.28
CPSF1-212ENST00000616140 FRMPD2BQ6IN97 320 aa13.29□□□□□ -0.28
CPSF1-212ENST00000616140 B3GNT7Q8NFL0 401 aa13.29□□□□□ -0.28
CPSF1-212ENST00000616140 OR5D16Q8NGK9 328 aa13.29□□□□□ -0.28
CPSF1-212ENST00000616140 ZNF700Q9H0M5 742 aa13.29□□□□□ -0.28
CPSF1-212ENST00000616140 TMEM184CQ9NVA4 438 aa13.29□□□□□ -0.28
CPSF1-212ENST00000616140 VNN3Q9NY84 501 aa13.29□□□□□ -0.28
CPSF1-212ENST00000616140 CXXC1Q9P0U4 656 aaPredicted RBP13.29□□□□□ -0.28
CPSF1-212ENST00000616140 EPHA6Q9UF33 1036 aa13.29□□□□□ -0.28
CPSF1-212ENST00000616140 DOT1LQ8TEK3 1739 aa13.29□□□□□ -0.28
CPSF1-212ENST00000616140 TRAPPC13A5PLN9 417 aa13.29□□□□□ -0.28
CPSF1-212ENST00000616140 AK1P00568 194 aa13.29□□□□□ -0.28
CPSF1-212ENST00000616140 XKRXQ6PP77 449 aa13.29□□□□□ -0.28
CPSF1-212ENST00000616140 TMEM234Q8WY98 164 aa13.29□□□□□ -0.28
CPSF1-212ENST00000616140 POTEKPQ9BYX7 375 aa13.29□□□□□ -0.28
CPSF1-212ENST00000616140 OR2B2Q9GZK3 357 aa13.29□□□□□ -0.28
CPSF1-212ENST00000616140 SLC6A16Q9GZN6 736 aa13.29□□□□□ -0.28
CPSF1-212ENST00000616140 ACOT13Q9NPJ3 140 aa13.29□□□□□ -0.28
CPSF1-212ENST00000616140 HMX2A2RU54 273 aa13.29□□□□□ -0.28
CPSF1-212ENST00000616140 DRD5P21918 477 aa13.29□□□□□ -0.28
CPSF1-212ENST00000616140 ZNF41P51814 821 aaPredicted RBP13.29□□□□□ -0.28
CPSF1-212ENST00000616140 VAMP2P63027 116 aa13.29□□□□□ -0.28
CPSF1-212ENST00000616140 APOFQ13790 326 aa13.29□□□□□ -0.28
CPSF1-212ENST00000616140 GXYLT1Q4G148 440 aa13.29□□□□□ -0.28
CPSF1-212ENST00000616140 CTSL3PQ5NE16 218 aa13.29□□□□□ -0.28
CPSF1-212ENST00000616140 FIGLAQ6QHK4 219 aa13.29□□□□□ -0.28
CPSF1-212ENST00000616140 GDPGP1Q6ZNW5 385 aa13.29□□□□□ -0.28
CPSF1-212ENST00000616140 MEX3DQ86XN8 651 aaKnown RBP13.29□□□□□ -0.28
CPSF1-212ENST00000616140 RASGEF1AQ8N9B8 481 aa13.29□□□□□ -0.28
CPSF1-212ENST00000616140 KLHDC9Q8NEP7 349 aa13.29□□□□□ -0.28
CPSF1-212ENST00000616140 ZNF480Q8WV37 535 aa13.29□□□□□ -0.28
CPSF1-212ENST00000616140 C17orf50Q8WW18 174 aa13.29□□□□□ -0.28
CPSF1-212ENST00000616140 ASB11Q8WXH4 323 aa13.29□□□□□ -0.28
CPSF1-212ENST00000616140 MYLIPQ8WY64 445 aa13.29□□□□□ -0.28
CPSF1-212ENST00000616140 MS4A4AQ96JQ5 239 aa13.29□□□□□ -0.28
CPSF1-212ENST00000616140 DHRS1Q96LJ7 313 aa13.29□□□□□ -0.28
CPSF1-212ENST00000616140 CLMPQ9H6B4 373 aa13.29□□□□□ -0.28
CPSF1-212ENST00000616140 PDE7BQ9NP56 450 aa13.29□□□□□ -0.28
CPSF1-212ENST00000616140 FBXO9Q9UK97 447 aaPredicted RBP13.29□□□□□ -0.28
CPSF1-212ENST00000616140 CHD4Q14839 1912 aa13.28□□□□□ -0.28
CPSF1-212ENST00000616140 KRBA1A5PL33 1030 aa13.28□□□□□ -0.28
CPSF1-212ENST00000616140 MROH6A6NGR9 719 aa13.28□□□□□ -0.28
CPSF1-212ENST00000616140 DISC1C4P0D8 188 aa13.28□□□□□ -0.28
CPSF1-212ENST00000616140 MC3RP41968 323 aa13.28□□□□□ -0.28
CPSF1-212ENST00000616140 CBFBQ13951 182 aa13.28□□□□□ -0.28
CPSF1-212ENST00000616140 ALKAL1Q6UXT8 129 aa13.28□□□□□ -0.28
CPSF1-212ENST00000616140 LIPIQ6XZB0 460 aa13.28□□□□□ -0.28
CPSF1-212ENST00000616140 GAB3Q8WWW8 586 aa13.28□□□□□ -0.28
CPSF1-212ENST00000616140 NT5C3BQ969T7 300 aa13.28□□□□□ -0.28
CPSF1-212ENST00000616140 WDR83Q9BRX9 315 aaKnown RBP13.28□□□□□ -0.28
CPSF1-212ENST00000616140 SACM1LQ9NTJ5 587 aa13.28□□□□□ -0.28
CPSF1-212ENST00000616140 DNMT3AQ9Y6K1 912 aaPredicted RBP13.28□□□□□ -0.28
CPSF1-212ENST00000616140 VNN2O95498 520 aa13.28□□□□□ -0.28
CPSF1-212ENST00000616140 H2AFB2P0C5Z0 115 aa13.28□□□□□ -0.28
CPSF1-212ENST00000616140 CLUP10909 449 aa13.28□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 68.1 ms