RNA–Protein interactions for RNA: ENST00000613670.4

LIG1-221, Transcript of DNA ligase 1, humanhuman

TSL 1 (best) BASIC

Gene LIG1, Length 3,949 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-221ENST00000613670 HMGN2P05204 90 aaKnown RBP11.9□□□□□ -0.5
LIG1-221ENST00000613670 PYCR1P32322 319 aa11.9□□□□□ -0.5
LIG1-221ENST00000613670 PTGS2P35354 604 aa11.9□□□□□ -0.5
LIG1-221ENST00000613670 SOX18P35713 384 aa11.9□□□□□ -0.5
LIG1-221ENST00000613670 OR3A3P47888 321 aa11.9□□□□□ -0.5
LIG1-221ENST00000613670 BLVRAP53004 296 aa11.9□□□□□ -0.5
LIG1-221ENST00000613670 PLK5Q496M5 336 aa11.9□□□□□ -0.5
LIG1-221ENST00000613670 NDUFAF5Q5TEU4 345 aa11.9□□□□□ -0.5
LIG1-221ENST00000613670 KATNB1Q9BVA0 655 aa11.9□□□□□ -0.5
LIG1-221ENST00000613670 TDP1Q9NUW8 608 aa11.9□□□□□ -0.5
LIG1-221ENST00000613670 TEX10Q9NXF1 929 aaPredicted RBP11.9□□□□□ -0.5
LIG1-221ENST00000613670 TAAR2Q9P1P5 351 aa11.9□□□□□ -0.5
LIG1-221ENST00000613670 KCNK6Q9Y257 313 aa11.9□□□□□ -0.5
LIG1-221ENST00000613670 C1orf226A1L170 272 aa11.9□□□□□ -0.51
LIG1-221ENST00000613670 SLCO2B1O94956 709 aa11.9□□□□□ -0.51
LIG1-221ENST00000613670 PRNPP04156 253 aa11.9□□□□□ -0.51
LIG1-221ENST00000613670 HMGN1P05114 100 aa11.9□□□□□ -0.51
LIG1-221ENST00000613670 TIMP2P16035 220 aa11.9□□□□□ -0.51
LIG1-221ENST00000613670 PTPN2P17706 415 aa11.9□□□□□ -0.51
LIG1-221ENST00000613670 DNASE1P24855 282 aa11.9□□□□□ -0.51
LIG1-221ENST00000613670 GPLD1P80108 840 aa11.9□□□□□ -0.51
LIG1-221ENST00000613670 PIP5KL1Q5T9C9 394 aa11.9□□□□□ -0.51
LIG1-221ENST00000613670 GAREM2Q75VX8 874 aa11.9□□□□□ -0.51
LIG1-221ENST00000613670 FAM109AQ8N4B1 249 aa11.9□□□□□ -0.51
LIG1-221ENST00000613670 GNPDA2Q8TDQ7 276 aa11.9□□□□□ -0.51
LIG1-221ENST00000613670 GRHL3Q8TE85 626 aa11.9□□□□□ -0.51
LIG1-221ENST00000613670 SNX33Q8WV41 574 aa11.9□□□□□ -0.51
LIG1-221ENST00000613670 SIPA1Q96FS4 1042 aa11.9□□□□□ -0.51
LIG1-221ENST00000613670 DEFB118Q96PH6 123 aa11.9□□□□□ -0.51
LIG1-221ENST00000613670 SH2B3Q9UQQ2 575 aa11.9□□□□□ -0.51
LIG1-221ENST00000613670 CCL26Q9Y258 94 aa11.9□□□□□ -0.51
LIG1-221ENST00000613670 MRPS23Q9Y3D9 190 aaKnown RBP11.9□□□□□ -0.51
LIG1-221ENST00000613670 PROM1O43490 865 aa11.89□□□□□ -0.51
LIG1-221ENST00000613670 ANXA3P12429 323 aa11.89□□□□□ -0.51
LIG1-221ENST00000613670 C4BPBP20851 252 aa11.89□□□□□ -0.51
LIG1-221ENST00000613670 SFRP4Q6FHJ7 346 aaPredicted RBP11.89□□□□□ -0.51
LIG1-221ENST00000613670 FAM71E1Q6IPT2 247 aa11.89□□□□□ -0.51
LIG1-221ENST00000613670 RNF44Q7L0R7 432 aa11.89□□□□□ -0.51
LIG1-221ENST00000613670 ZER1Q7Z7L7 766 aa11.89□□□□□ -0.51
LIG1-221ENST00000613670 ZSCAN2Q7Z7L9 614 aaPredicted RBP11.89□□□□□ -0.51
LIG1-221ENST00000613670 CLDN22Q8N7P3 220 aa11.89□□□□□ -0.51
LIG1-221ENST00000613670 CYB561A3Q8NBI2 242 aa11.89□□□□□ -0.51
LIG1-221ENST00000613670 BBS10Q8TAM1 723 aa11.89□□□□□ -0.51
LIG1-221ENST00000613670 RELTQ969Z4 430 aa11.89□□□□□ -0.51
LIG1-221ENST00000613670 TRMT61AQ96FX7 289 aaKnown RBP11.89□□□□□ -0.51
LIG1-221ENST00000613670 SAMD8Q96LT4 415 aa11.89□□□□□ -0.51
LIG1-221ENST00000613670 GAL3ST1Q99999 423 aa11.89□□□□□ -0.51
LIG1-221ENST00000613670 SLC46A2Q9BY10 475 aa11.89□□□□□ -0.51
LIG1-221ENST00000613670 TRIM36Q9NQ86 728 aa11.89□□□□□ -0.51
LIG1-221ENST00000613670 STOML2Q9UJZ1 356 aa11.89□□□□□ -0.51
LIG1-221ENST00000613670 CEP350Q5VT06 3117 aa11.89□□□□□ -0.51
LIG1-221ENST00000613670 RIIAD1A6NNX1 92 aa11.89□□□□□ -0.51
LIG1-221ENST00000613670 GABRPO00591 440 aa11.89□□□□□ -0.51
LIG1-221ENST00000613670 ETV6P41212 452 aa11.89□□□□□ -0.51
LIG1-221ENST00000613670 RFX2P48378 723 aa11.89□□□□□ -0.51
LIG1-221ENST00000613670 ASAH1Q13510 395 aa11.89□□□□□ -0.51
LIG1-221ENST00000613670 CAMK1Q14012 370 aa11.89□□□□□ -0.51
LIG1-221ENST00000613670 INSL4Q14641 139 aa11.89□□□□□ -0.51
LIG1-221ENST00000613670 FCN2Q15485 313 aa11.89□□□□□ -0.51
LIG1-221ENST00000613670 ZNF767PQ75MW2 155 aa11.89□□□□□ -0.51
LIG1-221ENST00000613670 PLCZ1Q86YW0 608 aa11.89□□□□□ -0.51
LIG1-221ENST00000613670 DCUN1D3Q8IWE4 304 aa11.89□□□□□ -0.51
LIG1-221ENST00000613670 ACBD7Q8N6N7 88 aa11.89□□□□□ -0.51
LIG1-221ENST00000613670 OR56A3Q8NH54 315 aa11.89□□□□□ -0.51
LIG1-221ENST00000613670 OR4C6Q8NH72 309 aa11.89□□□□□ -0.51
LIG1-221ENST00000613670 OSTF1Q92882 214 aa11.89□□□□□ -0.51
LIG1-221ENST00000613670 PPP1R16AQ96I34 528 aa11.89□□□□□ -0.51
LIG1-221ENST00000613670 METTL2AQ96IZ6 378 aaKnown RBP11.89□□□□□ -0.51
LIG1-221ENST00000613670 THAP7Q9BT49 309 aaPredicted RBP11.89□□□□□ -0.51
LIG1-221ENST00000613670 RPS6KB2Q9UBS0 482 aa11.89□□□□□ -0.51
LIG1-221ENST00000613670 FTSJ1Q9UET6 329 aa11.89□□□□□ -0.51
LIG1-221ENST00000613670 TMPRSS11EQ9UL52 423 aa11.89□□□□□ -0.51
LIG1-221ENST00000613670 OR51B4Q9Y5P0 310 aa11.89□□□□□ -0.51
LIG1-221ENST00000613670 NYNRINQ9P2P1 1898 aaKnown RBP11.89□□□□□ -0.51
LIG1-221ENST00000613670 PDCD11Q14690 1871 aaKnown RBP11.89□□□□□ -0.51
LIG1-221ENST00000613670 TEX13CA0A0J9YWL9 993 aa11.89□□□□□ -0.51
LIG1-221ENST00000613670 ABHD14A-ACY1A0A1B0GW23 586 aa11.89□□□□□ -0.51
LIG1-221ENST00000613670 LATS1O95835 1130 aa11.89□□□□□ -0.51
LIG1-221ENST00000613670 MPIP34949 423 aa11.89□□□□□ -0.51
LIG1-221ENST00000613670 CRYBB2P43320 205 aa11.89□□□□□ -0.51
LIG1-221ENST00000613670 IRF3Q14653 427 aa11.89□□□□□ -0.51
LIG1-221ENST00000613670 PUM1Q14671 1186 aaKnown RBP eCLIP11.89□□□□□ -0.517e-8■□□□□ 9.8
LIG1-221ENST00000613670 LIPIQ6XZB0 460 aa11.89□□□□□ -0.51
LIG1-221ENST00000613670 RASSF6Q6ZTQ3 369 aa11.89□□□□□ -0.51
LIG1-221ENST00000613670 PGBD3Q8N328 593 aa11.89□□□□□ -0.51
LIG1-221ENST00000613670 RIPOR3Q96MK2 946 aa11.89□□□□□ -0.51
LIG1-221ENST00000613670 MED20Q9H944 212 aa11.89□□□□□ -0.51
LIG1-221ENST00000613670 DIABLOQ9NR28 239 aa11.89□□□□□ -0.51
LIG1-221ENST00000613670 NDUFB11Q9NX14 153 aa11.89□□□□□ -0.51
LIG1-221ENST00000613670 PRPH2P23942 346 aa11.88□□□□□ -0.51
LIG1-221ENST00000613670 RRAS2P62070 204 aaPredicted RBP11.88□□□□□ -0.51
LIG1-221ENST00000613670 FABP5Q01469 135 aa11.88□□□□□ -0.51
LIG1-221ENST00000613670 RAB40BQ12829 278 aa11.88□□□□□ -0.51
LIG1-221ENST00000613670 SGCGQ13326 291 aa11.88□□□□□ -0.51
LIG1-221ENST00000613670 ZNF750Q32MQ0 723 aa11.88□□□□□ -0.51
LIG1-221ENST00000613670 CST9Q5W186 159 aa11.88□□□□□ -0.51
LIG1-221ENST00000613670 LINC00471Q8N535 108 aa11.88□□□□□ -0.51
LIG1-221ENST00000613670 TP53I13Q8NBR0 393 aaPredicted RBP11.88□□□□□ -0.51
LIG1-221ENST00000613670 OR2T33Q8NG76 320 aa11.88□□□□□ -0.51
LIG1-221ENST00000613670 OR51L1Q8NGJ5 315 aa11.88□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 108.9 ms