RNA–Protein interactions for RNA: ENST00000600868.5

UPF1-211, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-211ENST00000600868 THUMPD3Q9BV44 507 aaKnown RBP13.31□□□□□ -0.28
UPF1-211ENST00000600868 DEFB126Q9BYW3 111 aa13.31□□□□□ -0.28
UPF1-211ENST00000600868 WWTR1Q9GZV5 400 aa13.31□□□□□ -0.28
UPF1-211ENST00000600868 SERHL2Q9H4I8 314 aa13.31□□□□□ -0.28
UPF1-211ENST00000600868 IKZF5Q9H5V7 419 aa13.31□□□□□ -0.28
UPF1-211ENST00000600868 TAS2R1Q9NYW7 299 aa13.31□□□□□ -0.28
UPF1-211ENST00000600868 ABCD2Q9UBJ2 740 aa13.31□□□□□ -0.28
UPF1-211ENST00000600868 DTX4Q9Y2E6 619 aa13.31□□□□□ -0.28
UPF1-211ENST00000600868 GPR55Q9Y2T6 319 aaPredicted RBP13.31□□□□□ -0.28
UPF1-211ENST00000600868 ACACAQ13085 2346 aa13.31□□□□□ -0.28
UPF1-211ENST00000600868 TMEM200CA6NKL6 621 aa13.3□□□□□ -0.28
UPF1-211ENST00000600868 DUXAA6NLW8 204 aa13.3□□□□□ -0.28
UPF1-211ENST00000600868 MASP2O00187 686 aa13.3□□□□□ -0.28
UPF1-211ENST00000600868 ASNA1O43681 348 aa13.3□□□□□ -0.28
UPF1-211ENST00000600868 PRKNO60260 465 aaPredicted RBP13.3□□□□□ -0.28
UPF1-211ENST00000600868 NKX2-2O95096 273 aa13.3□□□□□ -0.28
UPF1-211ENST00000600868 ALOX5P09917 674 aa13.3□□□□□ -0.28
UPF1-211ENST00000600868 CT45A8P0DMV1 189 aa13.3□□□□□ -0.28
UPF1-211ENST00000600868 CT45A9P0DMV2 189 aa13.3□□□□□ -0.28
UPF1-211ENST00000600868 ACP2P11117 423 aa13.3□□□□□ -0.28
UPF1-211ENST00000600868 ITGAMP11215 1152 aa13.3□□□□□ -0.28
UPF1-211ENST00000600868 BMP2P12643 396 aa13.3□□□□□ -0.28
UPF1-211ENST00000600868 DRD5P21918 477 aa13.3□□□□□ -0.28
UPF1-211ENST00000600868 KHKP50053 298 aa13.3□□□□□ -0.28
UPF1-211ENST00000600868 MTPNP58546 118 aa13.3□□□□□ -0.28
UPF1-211ENST00000600868 RPS26P62854 115 aaKnown RBP13.3□□□□□ -0.28
UPF1-211ENST00000600868 PSG6Q00889 435 aa13.3□□□□□ -0.28
UPF1-211ENST00000600868 ZNHIT3Q15649 155 aaPredicted RBP13.3□□□□□ -0.28
UPF1-211ENST00000600868 LACTB2Q53H82 288 aaPredicted RBP13.3□□□□□ -0.28
UPF1-211ENST00000600868 CT45A2Q5DJT8 189 aa13.3□□□□□ -0.28
UPF1-211ENST00000600868 RABL3Q5HYI8 236 aa13.3□□□□□ -0.28
UPF1-211ENST00000600868 COX20Q5RI15 118 aa13.3□□□□□ -0.28
UPF1-211ENST00000600868 DDX59Q5T1V6 619 aaKnown RBP eCLIP13.3□□□□□ -0.28
UPF1-211ENST00000600868 HLA-DQA1Q5Y7H0 255 aa13.3□□□□□ -0.28
UPF1-211ENST00000600868 H3F3CQ6NXT2 135 aa13.3□□□□□ -0.28
UPF1-211ENST00000600868 SLC15A3Q8IY34 581 aa13.3□□□□□ -0.28
UPF1-211ENST00000600868 DEFB107AQ8IZN7 70 aa13.3□□□□□ -0.28
UPF1-211ENST00000600868 LGI4Q8N135 537 aa13.3□□□□□ -0.28
UPF1-211ENST00000600868 ARMC10Q8N2F6 343 aa13.3□□□□□ -0.28
UPF1-211ENST00000600868 HORMAD2Q8N7B1 307 aa13.3□□□□□ -0.28
UPF1-211ENST00000600868 ZNF441Q8N8Z8 693 aa13.3□□□□□ -0.28
UPF1-211ENST00000600868 KDF1Q8NAX2 398 aaPredicted RBP13.3□□□□□ -0.28
UPF1-211ENST00000600868 CLEC1AQ8NC01 280 aa13.3□□□□□ -0.28
UPF1-211ENST00000600868 SLC16A11Q8NCK7 471 aa13.3□□□□□ -0.28
UPF1-211ENST00000600868 TP53INP1Q96A56 240 aa13.3□□□□□ -0.28
UPF1-211ENST00000600868 LCORQ96JN0 433 aaPredicted RBP13.3□□□□□ -0.28
UPF1-211ENST00000600868 YIPF4Q9BSR8 244 aa13.3□□□□□ -0.28
UPF1-211ENST00000600868 ITPAQ9BY32 194 aa13.3□□□□□ -0.28
UPF1-211ENST00000600868 KAT8Q9H7Z6 458 aaKnown RBP13.3□□□□□ -0.28
UPF1-211ENST00000600868 SPAG4Q9NPE6 437 aa13.3□□□□□ -0.28
UPF1-211ENST00000600868 DUSP22Q9NRW4 184 aa13.3□□□□□ -0.28
UPF1-211ENST00000600868 RYDENQ9NUL5 291 aaKnown RBP13.3□□□□□ -0.28
UPF1-211ENST00000600868 CMTM6Q9NX76 183 aa13.3□□□□□ -0.28
UPF1-211ENST00000600868 THUMPD1Q9NXG2 353 aaKnown RBP13.3□□□□□ -0.28
UPF1-211ENST00000600868 L3MBTL1Q9Y468 752 aa13.3□□□□□ -0.28
UPF1-211ENST00000600868 URB1O60287 2271 aaKnown RBP13.3□□□□□ -0.28
UPF1-211ENST00000600868 FRYQ5TBA9 3013 aa13.29□□□□□ -0.28
UPF1-211ENST00000600868 FRG2CA6NGY1 282 aa13.29□□□□□ -0.28
UPF1-211ENST00000600868 ARGFXA6NJG6 315 aa13.29□□□□□ -0.28
UPF1-211ENST00000600868 K7ENP7 123 aa13.29□□□□□ -0.28
UPF1-211ENST00000600868 AGR2O95994 175 aa13.29□□□□□ -0.28
UPF1-211ENST00000600868 CRATP43155 626 aa13.29□□□□□ -0.28
UPF1-211ENST00000600868 SLC7A2P52569 658 aa13.29□□□□□ -0.28
UPF1-211ENST00000600868 CASP9P55211 416 aa13.29□□□□□ -0.28
UPF1-211ENST00000600868 PSPHP78330 225 aa13.29□□□□□ -0.28
UPF1-211ENST00000600868 ZSCAN26Q16670 478 aa13.29□□□□□ -0.28
UPF1-211ENST00000600868 DNAL1Q4LDG9 190 aa13.29□□□□□ -0.28
UPF1-211ENST00000600868 TNFAIP8L2Q6P589 184 aaPredicted RBP13.29□□□□□ -0.28
UPF1-211ENST00000600868 INO80CQ6PI98 192 aaPredicted RBP13.29□□□□□ -0.28
UPF1-211ENST00000600868 NPSR1Q6W5P4 371 aa13.29□□□□□ -0.28
UPF1-211ENST00000600868 WDR53Q7Z5U6 358 aaPredicted RBP13.29□□□□□ -0.28
UPF1-211ENST00000600868 YTHDF3Q7Z739 585 aaKnown RBP13.29□□□□□ -0.28
UPF1-211ENST00000600868 ADAMTS15Q8TE58 950 aa13.29□□□□□ -0.28
UPF1-211ENST00000600868 SLC9A6Q92581 669 aa13.29□□□□□ -0.28
UPF1-211ENST00000600868 JADE3Q92613 823 aa13.29□□□□□ -0.28
UPF1-211ENST00000600868 HSPBAP1Q96EW2 488 aa13.29□□□□□ -0.28
UPF1-211ENST00000600868 SLC35A4Q96G79 324 aa13.29□□□□□ -0.28
UPF1-211ENST00000600868 OR7D2Q96RA2 312 aa13.29□□□□□ -0.28
UPF1-211ENST00000600868 GAL3ST4Q96RP7 486 aa13.29□□□□□ -0.28
UPF1-211ENST00000600868 BTBD10Q9BSF8 475 aa13.29□□□□□ -0.28
UPF1-211ENST00000600868 SPATA9Q9BWV2 254 aa13.29□□□□□ -0.28
UPF1-211ENST00000600868 TRIM8Q9BZR9 551 aa13.29□□□□□ -0.28
UPF1-211ENST00000600868 LHPPQ9H008 270 aa13.29□□□□□ -0.28
UPF1-211ENST00000600868 ING2Q9H160 280 aa13.29□□□□□ -0.28
UPF1-211ENST00000600868 OR51I1Q9H343 314 aa13.29□□□□□ -0.28
UPF1-211ENST00000600868 PIGUQ9H490 435 aa13.29□□□□□ -0.28
UPF1-211ENST00000600868 TMEM181Q9P2C4 612 aa13.29□□□□□ -0.28
UPF1-211ENST00000600868 PCDHGB3Q9Y5G1 929 aa13.29□□□□□ -0.28
UPF1-211ENST00000600868 ASPMQ8IZT6 3477 aa13.29□□□□□ -0.28
UPF1-211ENST00000600868 HMGN4O00479 90 aa13.28□□□□□ -0.28
UPF1-211ENST00000600868 NME4O00746 187 aa13.28□□□□□ -0.28
UPF1-211ENST00000600868 TO15178 435 aa13.28□□□□□ -0.28
UPF1-211ENST00000600868 ACOX3O15254 700 aa13.28□□□□□ -0.28
UPF1-211ENST00000600868 GYG2O15488 501 aa13.28□□□□□ -0.28
UPF1-211ENST00000600868 TNFRSF21O75509 655 aa13.28□□□□□ -0.28
UPF1-211ENST00000600868 OR12D1P0DN82 309 aa13.28□□□□□ -0.28
UPF1-211ENST00000600868 ETFAP13804 333 aa13.28□□□□□ -0.28
UPF1-211ENST00000600868 GABRA3P34903 492 aa13.28□□□□□ -0.28
UPF1-211ENST00000600868 GZMMP51124 257 aa13.28□□□□□ -0.28
UPF1-211ENST00000600868 TMPRSS3P57727 454 aa13.28□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms