RNA–Protein interactions for RNA: ENST00000597618.5

TRIM28-210, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 609 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-210ENST00000597618 TMCO6Q96DC7 493 aa9.13□□□□□ -0.95
TRIM28-210ENST00000597618 PLPPR2Q96GM1 343 aa9.13□□□□□ -0.95
TRIM28-210ENST00000597618 LCORQ96JN0 433 aaPredicted RBP9.13□□□□□ -0.95
TRIM28-210ENST00000597618 NAP1L3Q99457 506 aaPredicted RBP9.13□□□□□ -0.95
TRIM28-210ENST00000597618 ZNF717Q9BY31 904 aaPredicted RBP9.13□□□□□ -0.95
TRIM28-210ENST00000597618 ITPAQ9BY32 194 aa9.13□□□□□ -0.95
TRIM28-210ENST00000597618 RHOJQ9H4E5 214 aa9.13□□□□□ -0.95
TRIM28-210ENST00000597618 DDX31Q9H8H2 851 aaKnown RBP9.13□□□□□ -0.95
TRIM28-210ENST00000597618 RNF122Q9H9V4 155 aa9.13□□□□□ -0.95
TRIM28-210ENST00000597618 FANCFQ9NPI8 374 aa9.13□□□□□ -0.95
TRIM28-210ENST00000597618 LZTFL1Q9NQ48 299 aa9.13□□□□□ -0.95
TRIM28-210ENST00000597618 EHD3Q9NZN3 535 aa9.13□□□□□ -0.95
TRIM28-210ENST00000597618 FBXL2Q9UKC9 423 aa9.13□□□□□ -0.95
TRIM28-210ENST00000597618 CHMP2BQ9UQN3 213 aa9.13□□□□□ -0.95
TRIM28-210ENST00000597618 TSC22D4Q9Y3Q8 395 aa9.13□□□□□ -0.95
TRIM28-210ENST00000597618 ZNF175Q9Y473 711 aa9.13□□□□□ -0.95
TRIM28-210ENST00000597618 EXPH5Q8NEV8 1989 aa9.12□□□□□ -0.95
TRIM28-210ENST00000597618 UQCRHLA0A096LP55 91 aa9.12□□□□□ -0.95
TRIM28-210ENST00000597618 A0A1W2PS29 197 aa9.12□□□□□ -0.95
TRIM28-210ENST00000597618 EFCAB8A8MWE9 144 aa9.12□□□□□ -0.95
TRIM28-210ENST00000597618 DNALI1O14645 258 aaPredicted RBP9.12□□□□□ -0.95
TRIM28-210ENST00000597618 TNFRSF21O75509 655 aa9.12□□□□□ -0.95
TRIM28-210ENST00000597618 WISP3O95389 354 aaPredicted RBP9.12□□□□□ -0.95
TRIM28-210ENST00000597618 PLAUP00749 431 aa9.12□□□□□ -0.95
TRIM28-210ENST00000597618 FCGR2AP12318 317 aa9.12□□□□□ -0.95
TRIM28-210ENST00000597618 CPMP14384 443 aa9.12□□□□□ -0.95
TRIM28-210ENST00000597618 CD1DP15813 335 aa9.12□□□□□ -0.95
TRIM28-210ENST00000597618 DPP4P27487 766 aa9.12□□□□□ -0.95
TRIM28-210ENST00000597618 BSGP35613 385 aa9.12□□□□□ -0.95
TRIM28-210ENST00000597618 ACVR1BP36896 505 aa9.12□□□□□ -0.95
TRIM28-210ENST00000597618 FNTAP49354 379 aa9.12□□□□□ -0.95
TRIM28-210ENST00000597618 XKP51811 444 aa9.12□□□□□ -0.95
TRIM28-210ENST00000597618 POU4F1Q01851 419 aa9.12□□□□□ -0.95
TRIM28-210ENST00000597618 MGAT5Q09328 741 aa9.12□□□□□ -0.95
TRIM28-210ENST00000597618 GUSBP1Q15486 140 aa9.12□□□□□ -0.95
TRIM28-210ENST00000597618 OR4D1Q15615 310 aa9.12□□□□□ -0.95
TRIM28-210ENST00000597618 EXOC3L2Q2M3D2 409 aa9.12□□□□□ -0.95
TRIM28-210ENST00000597618 HP1BP3Q5SSJ5 553 aaPredicted RBP9.12□□□□□ -0.95
TRIM28-210ENST00000597618 C6orf52Q5T4I8 152 aa9.12□□□□□ -0.95
TRIM28-210ENST00000597618 ADAM5Q6NVV9 412 aa9.12□□□□□ -0.95
TRIM28-210ENST00000597618 FAM214BQ7L5A3 538 aa9.12□□□□□ -0.95
TRIM28-210ENST00000597618 MYLK4Q86YV6 388 aaPredicted RBP9.12□□□□□ -0.95
TRIM28-210ENST00000597618 RNF175Q8N4F7 328 aa9.12□□□□□ -0.95
TRIM28-210ENST00000597618 OR4K14Q8NGD5 310 aa9.12□□□□□ -0.95
TRIM28-210ENST00000597618 EXT2Q93063 718 aa9.12□□□□□ -0.95
TRIM28-210ENST00000597618 LRRC39Q96DD0 335 aa9.12□□□□□ -0.95
TRIM28-210ENST00000597618 TSPAN17Q96FV3 270 aa9.12□□□□□ -0.95
TRIM28-210ENST00000597618 COL21A1Q96P44 957 aa9.12□□□□□ -0.95
TRIM28-210ENST00000597618 MTERF1Q99551 399 aaKnown RBP9.12□□□□□ -0.95
TRIM28-210ENST00000597618 C19orf24Q9BVV8 132 aa9.12□□□□□ -0.95
TRIM28-210ENST00000597618 PINK1Q9BXM7 581 aa9.12□□□□□ -0.95
TRIM28-210ENST00000597618 SLCO5A1Q9H2Y9 848 aa9.12□□□□□ -0.95
TRIM28-210ENST00000597618 NSMCE4AQ9NXX6 385 aa9.12□□□□□ -0.95
TRIM28-210ENST00000597618 OPTCQ9UBM4 332 aa9.12□□□□□ -0.95
TRIM28-210ENST00000597618 ASIC3Q9UHC3 531 aa9.12□□□□□ -0.95
TRIM28-210ENST00000597618 PCDHGA11Q9Y5H2 935 aa9.12□□□□□ -0.95
TRIM28-210ENST00000597618 SVEP1Q4LDE5 3571 aa9.12□□□□□ -0.95
TRIM28-210ENST00000597618 OR6C70A6NIJ9 312 aa9.11□□□□□ -0.95
TRIM28-210ENST00000597618 K7EPI3 171 aa9.11□□□□□ -0.95
TRIM28-210ENST00000597618 PGRMC2O15173 223 aa9.11□□□□□ -0.95
TRIM28-210ENST00000597618 ZIC3O60481 467 aa9.11□□□□□ -0.95
TRIM28-210ENST00000597618 CCDC166P0CW27 439 aa9.11□□□□□ -0.95
TRIM28-210ENST00000597618 S1PR1P21453 382 aa9.11□□□□□ -0.95
TRIM28-210ENST00000597618 TCEA1P23193 301 aaKnown RBP9.11□□□□□ -0.95
TRIM28-210ENST00000597618 GRK2P25098 689 aa9.11□□□□□ -0.95
TRIM28-210ENST00000597618 THBS2P35442 1172 aa9.11□□□□□ -0.95
TRIM28-210ENST00000597618 NEK2P51955 445 aa9.11□□□□□ -0.95
TRIM28-210ENST00000597618 B3GALT5-AS1P59052 145 aa9.11□□□□□ -0.95
TRIM28-210ENST00000597618 CUL3Q13618 768 aa9.11□□□□□ -0.95
TRIM28-210ENST00000597618 PON3Q15166 354 aa9.11□□□□□ -0.95
TRIM28-210ENST00000597618 DNM1P46Q6ZS02 220 aa9.11□□□□□ -0.95
TRIM28-210ENST00000597618 WFDC8Q8IUA0 241 aa9.11□□□□□ -0.95
TRIM28-210ENST00000597618 ADCY4Q8NFM4 1077 aa9.11□□□□□ -0.95
TRIM28-210ENST00000597618 OR4K17Q8NGC6 315 aa9.11□□□□□ -0.95
TRIM28-210ENST00000597618 OR6K3Q8NGY3 331 aa9.11□□□□□ -0.95
TRIM28-210ENST00000597618 FNDC9Q8TBE3 224 aa9.11□□□□□ -0.95
TRIM28-210ENST00000597618 UBTD2Q8WUN7 234 aa9.11□□□□□ -0.95
TRIM28-210ENST00000597618 FBXW5Q969U6 566 aa9.11□□□□□ -0.95
TRIM28-210ENST00000597618 LRRC1Q9BTT6 524 aa9.11□□□□□ -0.95
TRIM28-210ENST00000597618 BRINP2Q9C0B6 783 aa9.11□□□□□ -0.95
TRIM28-210ENST00000597618 ACTR6Q9GZN1 396 aa9.11□□□□□ -0.95
TRIM28-210ENST00000597618 OR10A4Q9H209 315 aa9.11□□□□□ -0.95
TRIM28-210ENST00000597618 BARX1Q9HBU1 254 aaPredicted RBP9.11□□□□□ -0.95
TRIM28-210ENST00000597618 TMEM160Q9NX00 188 aa9.11□□□□□ -0.95
TRIM28-210ENST00000597618 NUDT4Q9NZJ9 180 aa9.11□□□□□ -0.95
TRIM28-210ENST00000597618 LPAR3Q9UBY5 353 aa9.11□□□□□ -0.95
TRIM28-210ENST00000597618 BCAP29Q9UHQ4 241 aa9.11□□□□□ -0.95
TRIM28-210ENST00000597618 EMC9Q9Y3B6 208 aa9.11□□□□□ -0.95
TRIM28-210ENST00000597618 CR1P17927 2039 aa9.1□□□□□ -0.95
TRIM28-210ENST00000597618 HEATR5AQ86XA9 2040 aa9.1□□□□□ -0.95
TRIM28-210ENST00000597618 GOLGA6L10A0A0M3HER8 536 aa9.1□□□□□ -0.95
TRIM28-210ENST00000597618 GOLGA6L10A6NI86 522 aa9.1□□□□□ -0.95
TRIM28-210ENST00000597618 H0YIV9 168 aa9.1□□□□□ -0.95
TRIM28-210ENST00000597618 LINC01387J3KSC0 135 aa9.1□□□□□ -0.95
TRIM28-210ENST00000597618 PGRMC1O00264 195 aaKnown RBP9.1□□□□□ -0.95
TRIM28-210ENST00000597618 TO15178 435 aa9.1□□□□□ -0.95
TRIM28-210ENST00000597618 SEC14L5O43304 696 aa9.1□□□□□ -0.95
TRIM28-210ENST00000597618 ADAM11O75078 769 aa9.1□□□□□ -0.95
TRIM28-210ENST00000597618 IGHV4-39P01824 125 aa9.1□□□□□ -0.95
TRIM28-210ENST00000597618 SOD3P08294 240 aa9.1□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms