RNA–Protein interactions for RNA: ENST00000594243.1

UPF1-202, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 683 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-202ENST00000594243 TMEM64Q6YI46 380 aa13.83□□□□□ -0.2
UPF1-202ENST00000594243 RGS9BPQ6ZS82 235 aa13.83□□□□□ -0.2
UPF1-202ENST00000594243 CAMKMTQ7Z624 323 aa13.83□□□□□ -0.2
UPF1-202ENST00000594243 PRR22Q8IZ63 422 aa13.83□□□□□ -0.2
UPF1-202ENST00000594243 FBXW8Q8N3Y1 598 aa13.83□□□□□ -0.2
UPF1-202ENST00000594243 KRTCAP2Q8N6L1 136 aa13.83□□□□□ -0.2
UPF1-202ENST00000594243 OR10G3Q8NGC4 313 aa13.83□□□□□ -0.2
UPF1-202ENST00000594243 OR5M3Q8NGP4 307 aa13.83□□□□□ -0.2
UPF1-202ENST00000594243 PRR7Q8TB68 274 aa13.83□□□□□ -0.2
UPF1-202ENST00000594243 OR5P2Q8WZ92 322 aa13.83□□□□□ -0.2
UPF1-202ENST00000594243 DIO2Q92813 273 aa13.83□□□□□ -0.2
UPF1-202ENST00000594243 GPR137Q96N19 417 aa13.83□□□□□ -0.2
UPF1-202ENST00000594243 DUSP26Q9BV47 211 aa13.83□□□□□ -0.2
UPF1-202ENST00000594243 WDR55Q9H6Y2 383 aaPredicted RBP13.83□□□□□ -0.2
UPF1-202ENST00000594243 DEPPQ9NTK1 212 aa13.83□□□□□ -0.2
UPF1-202ENST00000594243 ZNF446Q9NWS9 450 aa13.83□□□□□ -0.2
UPF1-202ENST00000594243 GOLGA8QA0A0J9YX86 632 aa13.82□□□□□ -0.2
UPF1-202ENST00000594243 GOLGA8OA6NCC3 632 aa13.82□□□□□ -0.2
UPF1-202ENST00000594243 NPIPA5E9PKD4 350 aa13.82□□□□□ -0.2
UPF1-202ENST00000594243 GOLGA8NF8WBI6 632 aa13.82□□□□□ -0.2
UPF1-202ENST00000594243 TFECO14948 347 aaPredicted RBP13.82□□□□□ -0.2
UPF1-202ENST00000594243 EMC8O43402 210 aa13.82□□□□□ -0.2
UPF1-202ENST00000594243 ASNA1O43681 348 aa13.82□□□□□ -0.2
UPF1-202ENST00000594243 ABCB7O75027 752 aa13.82□□□□□ -0.2
UPF1-202ENST00000594243 UNC5CO95185 931 aa13.82□□□□□ -0.2
UPF1-202ENST00000594243 PSMG1O95456 288 aa13.82□□□□□ -0.2
UPF1-202ENST00000594243 ABCB1P08183 1280 aaPredicted RBP13.82□□□□□ -0.2
UPF1-202ENST00000594243 PIGAP37287 484 aa13.82□□□□□ -0.2
UPF1-202ENST00000594243 PRKAG1P54619 331 aa13.82□□□□□ -0.2
UPF1-202ENST00000594243 FBXW4P57775 412 aa13.82□□□□□ -0.2
UPF1-202ENST00000594243 KCNJ2P63252 427 aa13.82□□□□□ -0.2
UPF1-202ENST00000594243 PRR5P85299 388 aa13.82□□□□□ -0.2
UPF1-202ENST00000594243 SRSF11Q05519 484 aaKnown RBP13.82□□□□□ -0.2
UPF1-202ENST00000594243 ZNF155Q12901 538 aaPredicted RBP13.82□□□□□ -0.2
UPF1-202ENST00000594243 PGS1Q32NB8 556 aa13.82□□□□□ -0.2
UPF1-202ENST00000594243 HSP90B2PQ58FF3 399 aa13.82□□□□□ -0.2
UPF1-202ENST00000594243 NXNQ6DKJ4 435 aa13.82□□□□□ -0.2
UPF1-202ENST00000594243 SLC22A16Q86VW1 577 aa13.82□□□□□ -0.2
UPF1-202ENST00000594243 SLC44A2Q8IWA5 706 aaPredicted RBP13.82□□□□□ -0.2
UPF1-202ENST00000594243 SLC34A3Q8N130 599 aa13.82□□□□□ -0.2
UPF1-202ENST00000594243 VPS37AQ8NEZ2 397 aa13.82□□□□□ -0.2
UPF1-202ENST00000594243 NUP43Q8NFH3 380 aa13.82□□□□□ -0.2
UPF1-202ENST00000594243 SPPL2AQ8TCT8 520 aa13.82□□□□□ -0.2
UPF1-202ENST00000594243 ACTRT2Q8TDY3 377 aa13.82□□□□□ -0.2
UPF1-202ENST00000594243 CKAP2Q8WWK9 683 aa13.82□□□□□ -0.2
UPF1-202ENST00000594243 TMCO6Q96DC7 493 aa13.82□□□□□ -0.2
UPF1-202ENST00000594243 OMA1Q96E52 524 aa13.82□□□□□ -0.2
UPF1-202ENST00000594243 MAELQ96JY0 434 aaKnown RBP13.82□□□□□ -0.2
UPF1-202ENST00000594243 MAGEB18Q96M61 343 aa13.82□□□□□ -0.2
UPF1-202ENST00000594243 IL1RL2Q9HB29 575 aa13.82□□□□□ -0.2
UPF1-202ENST00000594243 NTMQ9P121 344 aa13.82□□□□□ -0.2
UPF1-202ENST00000594243 MRTO4Q9UKD2 239 aaKnown RBP13.82□□□□□ -0.2
UPF1-202ENST00000594243 NPIPA1Q9UND3 350 aa13.82□□□□□ -0.2
UPF1-202ENST00000594243 OR10H1Q9Y4A9 318 aa13.82□□□□□ -0.2
UPF1-202ENST00000594243 SEC23IPQ9Y6Y8 1000 aaKnown RBP13.82□□□□□ -0.2
UPF1-202ENST00000594243 OR6C70A6NIJ9 312 aa13.81□□□□□ -0.2
UPF1-202ENST00000594243 G3V3Y1 287 aa13.81□□□□□ -0.2
UPF1-202ENST00000594243 ATP8B1O43520 1251 aa13.81□□□□□ -0.2
UPF1-202ENST00000594243 REM1O75628 298 aa13.81□□□□□ -0.2
UPF1-202ENST00000594243 SNX4O95219 450 aa13.81□□□□□ -0.2
UPF1-202ENST00000594243 TGDSO95455 350 aa13.81□□□□□ -0.2
UPF1-202ENST00000594243 DNASE1L1P49184 302 aa13.81□□□□□ -0.2
UPF1-202ENST00000594243 CDK9P50750 372 aaKnown RBP13.81□□□□□ -0.2
UPF1-202ENST00000594243 CLNS1AP54105 237 aaKnown RBP13.81□□□□□ -0.2
UPF1-202ENST00000594243 PNLIPRP2P54317 469 aa13.81□□□□□ -0.2
UPF1-202ENST00000594243 CORO7P57737 925 aa13.81□□□□□ -0.2
UPF1-202ENST00000594243 PPIAP62937 165 aaKnown RBP13.81□□□□□ -0.2
UPF1-202ENST00000594243 PSG6Q00889 435 aa13.81□□□□□ -0.2
UPF1-202ENST00000594243 DPY19L1Q2PZI1 675 aa13.81□□□□□ -0.2
UPF1-202ENST00000594243 VPS26BQ4G0F5 336 aa13.81□□□□□ -0.2
UPF1-202ENST00000594243 CYP27C1Q4G0S4 372 aa13.81□□□□□ -0.2
UPF1-202ENST00000594243 RNFT1Q5M7Z0 435 aa13.81□□□□□ -0.2
UPF1-202ENST00000594243 PRAMEF20Q5VT98 475 aa13.81□□□□□ -0.2
UPF1-202ENST00000594243 TMEM198Q66K66 360 aa13.81□□□□□ -0.2
UPF1-202ENST00000594243 TMEM81Q6P7N7 255 aa13.81□□□□□ -0.2
UPF1-202ENST00000594243 ZCCHC12Q6PEW1 402 aa13.81□□□□□ -0.2
UPF1-202ENST00000594243 PAOXQ6QHF9 649 aa13.81□□□□□ -0.2
UPF1-202ENST00000594243 SIAH3Q8IW03 269 aa13.81□□□□□ -0.2
UPF1-202ENST00000594243 ARFGAP2Q8N6H7 521 aa13.81□□□□□ -0.2
UPF1-202ENST00000594243 OR8J2Q8NGG1 315 aa13.81□□□□□ -0.2
UPF1-202ENST00000594243 TMBIM1Q969X1 311 aa13.81□□□□□ -0.2
UPF1-202ENST00000594243 TESCQ96BS2 214 aa13.81□□□□□ -0.2
UPF1-202ENST00000594243 COL21A1Q96P44 957 aa13.81□□□□□ -0.2
UPF1-202ENST00000594243 LMF2Q9BU23 707 aaKnown RBP13.81□□□□□ -0.2
UPF1-202ENST00000594243 DOHHQ9BU89 302 aa13.81□□□□□ -0.2
UPF1-202ENST00000594243 TTTY12Q9BZ98 90 aa13.81□□□□□ -0.2
UPF1-202ENST00000594243 Q9N2J8 555 aa13.81□□□□□ -0.2
UPF1-202ENST00000594243 CNOT11Q9UKZ1 510 aaKnown RBP13.81□□□□□ -0.2
UPF1-202ENST00000594243 BOKQ9UMX3 212 aaPredicted RBP13.81□□□□□ -0.2
UPF1-202ENST00000594243 PCDHGB4Q9UN71 923 aa13.81□□□□□ -0.2
UPF1-202ENST00000594243 USH1CQ9Y6N9 552 aa13.81□□□□□ -0.2
UPF1-202ENST00000594243 FLNCQ14315 2725 aa13.8□□□□□ -0.2
UPF1-202ENST00000594243 PINLYPA6NC86 204 aa13.8□□□□□ -0.2
UPF1-202ENST00000594243 ZNF195O14628 629 aa13.8□□□□□ -0.2
UPF1-202ENST00000594243 ANKRD28O15084 1053 aa13.8□□□□□ -0.2
UPF1-202ENST00000594243 CFLARO15519 480 aa13.8□□□□□ -0.2
UPF1-202ENST00000594243 HS6ST1O60243 411 aa13.8□□□□□ -0.2
UPF1-202ENST00000594243 DIAPH2O60879 1101 aa13.8□□□□□ -0.2
UPF1-202ENST00000594243 NME6O75414 186 aaPredicted RBP13.8□□□□□ -0.2
UPF1-202ENST00000594243 ALDOCP09972 364 aaKnown RBP13.8□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms