RNA–Protein interactions for RNA: ENST00000581226.1

SMCHD1-204, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 3

Gene SMCHD1, Length 459 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-204ENST00000581226 NT5C2P49902 561 aa3.32□□□□□ -1.88
SMCHD1-204ENST00000581226 SGSHP51688 502 aa3.32□□□□□ -1.88
SMCHD1-204ENST00000581226 CASP9P55211 416 aa3.32□□□□□ -1.88
SMCHD1-204ENST00000581226 NOP14P78316 857 aaKnown RBP3.32□□□□□ -1.88
SMCHD1-204ENST00000581226 NME3Q13232 169 aa3.32□□□□□ -1.88
SMCHD1-204ENST00000581226 SMC1AQ14683 1233 aaKnown RBP3.32□□□□□ -1.88
SMCHD1-204ENST00000581226 ZIC1Q15915 447 aa3.32□□□□□ -1.88
SMCHD1-204ENST00000581226 HERC4Q5GLZ8 1057 aaPredicted RBP3.32□□□□□ -1.88
SMCHD1-204ENST00000581226 PRR5LQ6MZQ0 368 aa3.32□□□□□ -1.88
SMCHD1-204ENST00000581226 ADAMTSL2Q86TH1 951 aa3.32□□□□□ -1.88
SMCHD1-204ENST00000581226 ERICH1Q86X53 443 aa3.32□□□□□ -1.88
SMCHD1-204ENST00000581226 UNC5CLQ8IV45 518 aa3.32□□□□□ -1.88
SMCHD1-204ENST00000581226 LRRC17Q8N6Y2 441 aa3.32□□□□□ -1.88
SMCHD1-204ENST00000581226 NEK11Q8NG66 645 aa3.32□□□□□ -1.88
SMCHD1-204ENST00000581226 EXOC6Q8TAG9 804 aa3.32□□□□□ -1.88
SMCHD1-204ENST00000581226 PHYHIPQ92561 330 aa3.32□□□□□ -1.88
SMCHD1-204ENST00000581226 DLX4Q92988 240 aaPredicted RBP3.32□□□□□ -1.88
SMCHD1-204ENST00000581226 COQ7Q99807 217 aa3.32□□□□□ -1.88
SMCHD1-204ENST00000581226 PAXXQ9BUH6 204 aa3.32□□□□□ -1.88
SMCHD1-204ENST00000581226 YTHDF1Q9BYJ9 559 aaKnown RBP3.32□□□□□ -1.88
SMCHD1-204ENST00000581226 NACA2Q9H009 215 aa3.32□□□□□ -1.88
SMCHD1-204ENST00000581226 STARD5Q9NSY2 213 aa3.32□□□□□ -1.88
SMCHD1-204ENST00000581226 CLEC4EQ9ULY5 219 aa3.32□□□□□ -1.88
SMCHD1-204ENST00000581226 CELA1Q9UNI1 258 aa3.32□□□□□ -1.88
SMCHD1-204ENST00000581226 NTNG1Q9Y2I2 539 aa3.32□□□□□ -1.88
SMCHD1-204ENST00000581226 STRAPQ9Y3F4 350 aaKnown RBP3.32□□□□□ -1.88
SMCHD1-204ENST00000581226 IGHV3-35A0A0C4DH35 117 aa3.31□□□□□ -1.88
SMCHD1-204ENST00000581226 KLF18A0A0U1RQI7 1052 aa3.31□□□□□ -1.88
SMCHD1-204ENST00000581226 A0A0U1RRA0 63 aa3.31□□□□□ -1.88
SMCHD1-204ENST00000581226 TMEM89A2RUT3 159 aa3.31□□□□□ -1.88
SMCHD1-204ENST00000581226 BUB1O43683 1085 aa3.31□□□□□ -1.88
SMCHD1-204ENST00000581226 LCMT2O60294 686 aaKnown RBP3.31□□□□□ -1.88
SMCHD1-204ENST00000581226 IGSF6O95976 241 aa3.31□□□□□ -1.88
SMCHD1-204ENST00000581226 HOXB7P09629 217 aa3.31□□□□□ -1.88
SMCHD1-204ENST00000581226 ALPIP09923 528 aa3.31□□□□□ -1.88
SMCHD1-204ENST00000581226 DUX4L4P0CJ87 422 aa3.31□□□□□ -1.88
SMCHD1-204ENST00000581226 AZU1P20160 251 aa3.31□□□□□ -1.88
SMCHD1-204ENST00000581226 PTPN4P29074 926 aa3.31□□□□□ -1.88
SMCHD1-204ENST00000581226 METAP1P53582 386 aa3.31□□□□□ -1.88
SMCHD1-204ENST00000581226 LYZP61626 148 aa3.31□□□□□ -1.88
SMCHD1-204ENST00000581226 TGIF1Q15583 401 aa3.31□□□□□ -1.88
SMCHD1-204ENST00000581226 ZNF528Q3MIS6 628 aa3.31□□□□□ -1.88
SMCHD1-204ENST00000581226 LIPKQ5VXJ0 399 aa3.31□□□□□ -1.88
SMCHD1-204ENST00000581226 PLBD1Q6P4A8 553 aa3.31□□□□□ -1.88
SMCHD1-204ENST00000581226 CCNYQ8ND76 341 aa3.31□□□□□ -1.88
SMCHD1-204ENST00000581226 CASD1Q96PB1 797 aa3.31□□□□□ -1.88
SMCHD1-204ENST00000581226 TSPAN18Q96SJ8 248 aa3.31□□□□□ -1.88
SMCHD1-204ENST00000581226 PURGQ9UJV8 347 aaKnown RBP3.31□□□□□ -1.88
SMCHD1-204ENST00000581226 FKBP7Q9Y680 259 aa3.31□□□□□ -1.88
SMCHD1-204ENST00000581226 GON4LQ3T8J9 2241 aa3.31□□□□□ -1.88
SMCHD1-204ENST00000581226 RALGAPA1Q6GYQ0 2036 aa3.31□□□□□ -1.88
SMCHD1-204ENST00000581226 ZMYM6O95789 1325 aa3.3□□□□□ -1.88
SMCHD1-204ENST00000581226 LRIT2A6NDA9 550 aa3.3□□□□□ -1.88
SMCHD1-204ENST00000581226 NPIPA2E9PIF3 369 aa3.3□□□□□ -1.88
SMCHD1-204ENST00000581226 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP3.3□□□□□ -1.88
SMCHD1-204ENST00000581226 PDLIM1O00151 329 aa3.3□□□□□ -1.88
SMCHD1-204ENST00000581226 SDC3O75056 442 aa3.3□□□□□ -1.88
SMCHD1-204ENST00000581226 PROS1P07225 676 aa3.3□□□□□ -1.88
SMCHD1-204ENST00000581226 PRKAR2BP31323 418 aa3.3□□□□□ -1.88
SMCHD1-204ENST00000581226 PRKCEQ02156 737 aa3.3□□□□□ -1.88
SMCHD1-204ENST00000581226 AP1B1Q10567 949 aa3.3□□□□□ -1.88
SMCHD1-204ENST00000581226 ASAH1Q13510 395 aa3.3□□□□□ -1.88
SMCHD1-204ENST00000581226 EIF2B1Q14232 305 aaKnown RBP3.3□□□□□ -1.88
SMCHD1-204ENST00000581226 QRICH1Q2TAL8 776 aa3.3□□□□□ -1.88
SMCHD1-204ENST00000581226 ZNF699Q32M78 642 aa3.3□□□□□ -1.88
SMCHD1-204ENST00000581226 PAN3Q58A45 887 aaKnown RBP3.3□□□□□ -1.88
SMCHD1-204ENST00000581226 AMZ2Q86W34 360 aa3.3□□□□□ -1.88
SMCHD1-204ENST00000581226 GPBP1Q86WP2 473 aa3.3□□□□□ -1.88
SMCHD1-204ENST00000581226 BATF2Q8N1L9 274 aa3.3□□□□□ -1.88
SMCHD1-204ENST00000581226 CENPSQ8N2Z9 138 aa3.3□□□□□ -1.88
SMCHD1-204ENST00000581226 ZNF397Q8NF99 534 aaPredicted RBP3.3□□□□□ -1.88
SMCHD1-204ENST00000581226 FNDC8Q8TC99 324 aa3.3□□□□□ -1.88
SMCHD1-204ENST00000581226 URGCPQ8TCY9 931 aa3.3□□□□□ -1.88
SMCHD1-204ENST00000581226 DNAJA3Q96EY1 480 aa3.3□□□□□ -1.88
SMCHD1-204ENST00000581226 ATP6V0BQ99437 205 aa3.3□□□□□ -1.88
SMCHD1-204ENST00000581226 MAPKAP1Q9BPZ7 522 aa3.3□□□□□ -1.88
SMCHD1-204ENST00000581226 FTHL17Q9BXU8 183 aa3.3□□□□□ -1.88
SMCHD1-204ENST00000581226 VNN3Q9NY84 501 aa3.3□□□□□ -1.88
SMCHD1-204ENST00000581226 ZNF256Q9Y2P7 627 aaPredicted RBP3.3□□□□□ -1.88
SMCHD1-204ENST00000581226 KLF2Q9Y5W3 355 aaPredicted RBP3.3□□□□□ -1.88
SMCHD1-204ENST00000581226 E7ENQ6 273 aa3.29□□□□□ -1.88
SMCHD1-204ENST00000581226 TNFSF11O14788 317 aa3.29□□□□□ -1.88
SMCHD1-204ENST00000581226 STK17BO94768 372 aa3.29□□□□□ -1.88
SMCHD1-204ENST00000581226 SLC2A10O95528 541 aa3.29□□□□□ -1.88
SMCHD1-204ENST00000581226 PGK2P07205 417 aa3.29□□□□□ -1.88
SMCHD1-204ENST00000581226 CT45A10P0DMU9 189 aa3.29□□□□□ -1.88
SMCHD1-204ENST00000581226 ZBTB25P24278 435 aa3.29□□□□□ -1.88
SMCHD1-204ENST00000581226 IGFBP5P24593 272 aa3.29□□□□□ -1.88
SMCHD1-204ENST00000581226 MAGEA4P43358 317 aa3.29□□□□□ -1.88
SMCHD1-204ENST00000581226 XCR1P46094 333 aa3.29□□□□□ -1.88
SMCHD1-204ENST00000581226 OR1D4P47884 311 aa3.29□□□□□ -1.88
SMCHD1-204ENST00000581226 POU3F4P49335 361 aa3.29□□□□□ -1.88
SMCHD1-204ENST00000581226 CD47Q08722 323 aa3.29□□□□□ -1.88
SMCHD1-204ENST00000581226 PPP2R5CQ13362 524 aa3.29□□□□□ -1.88
SMCHD1-204ENST00000581226 SERTAD2Q14140 314 aa3.29□□□□□ -1.88
SMCHD1-204ENST00000581226 KIAA0040Q15053 153 aa3.29□□□□□ -1.88
SMCHD1-204ENST00000581226 AGKQ53H12 422 aa3.29□□□□□ -1.88
SMCHD1-204ENST00000581226 LCE3EQ5T5B0 92 aa3.29□□□□□ -1.88
SMCHD1-204ENST00000581226 GOLGA7Q7Z5G4 137 aa3.29□□□□□ -1.88
SMCHD1-204ENST00000581226 CCDC51Q96ER9 411 aa3.29□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms