RNA–Protein interactions for RNA: ENST00000579558.5

SHMT1-206, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,077 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-206ENST00000579558 GPR55Q9Y2T6 319 aaPredicted RBP21.92■■□□□ 1.1
SHMT1-206ENST00000579558 TMED5Q9Y3A6 229 aa21.92■■□□□ 1.1
SHMT1-206ENST00000579558 NCOA6Q14686 2063 aaPredicted RBP21.92■■□□□ 1.1
SHMT1-206ENST00000579558 A0A1B0GVC2 190 aa21.91■■□□□ 1.1
SHMT1-206ENST00000579558 OR14I1A6ND48 311 aa21.91■■□□□ 1.1
SHMT1-206ENST00000579558 PRSS44E7EML9 344 aa21.91■■□□□ 1.1
SHMT1-206ENST00000579558 TO15178 435 aa21.91■■□□□ 1.1
SHMT1-206ENST00000579558 NME6O75414 186 aaPredicted RBP21.91■■□□□ 1.1
SHMT1-206ENST00000579558 ERN1O75460 977 aaKnown RBP21.91■■□□□ 1.1
SHMT1-206ENST00000579558 SNX4O95219 450 aa21.91■■□□□ 1.1
SHMT1-206ENST00000579558 SDC1P18827 310 aa21.91■■□□□ 1.1
SHMT1-206ENST00000579558 DCTP40126 519 aa21.91■■□□□ 1.1
SHMT1-206ENST00000579558 CASP3P42574 277 aa21.91■■□□□ 1.1
SHMT1-206ENST00000579558 MASP1P48740 699 aa21.91■■□□□ 1.1
SHMT1-206ENST00000579558 MAN2A2P49641 1150 aa21.91■■□□□ 1.1
SHMT1-206ENST00000579558 ZNF787Q6DD87 383 aa21.91■■□□□ 1.1
SHMT1-206ENST00000579558 NUP54Q7Z3B4 507 aa21.91■■□□□ 1.1
SHMT1-206ENST00000579558 CROCCP2Q86T23 111 aa21.91■■□□□ 1.1
SHMT1-206ENST00000579558 OR6Y1Q8NGX8 325 aa21.91■■□□□ 1.1
SHMT1-206ENST00000579558 HGDQ93099 445 aa21.91■■□□□ 1.1
SHMT1-206ENST00000579558 TSSK3Q96PN8 268 aa21.91■■□□□ 1.1
SHMT1-206ENST00000579558 TP63Q9H3D4 680 aaPredicted RBP21.91■■□□□ 1.1
SHMT1-206ENST00000579558 GLIPR2Q9H4G4 154 aa21.91■■□□□ 1.1
SHMT1-206ENST00000579558 METTL7AQ9H8H3 244 aa21.91■■□□□ 1.1
SHMT1-206ENST00000579558 QPCTLQ9NXS2 382 aa21.91■■□□□ 1.1
SHMT1-206ENST00000579558 TAS2R9Q9NYW1 312 aa21.91■■□□□ 1.1
SHMT1-206ENST00000579558 HRH3Q9Y5N1 445 aa21.91■■□□□ 1.1
SHMT1-206ENST00000579558 NCKAP5O14513 1909 aa21.9■■□□□ 1.1
SHMT1-206ENST00000579558 PCNX1Q96RV3 2341 aa21.9■■□□□ 1.1
SHMT1-206ENST00000579558 TRGV5A0A0B4J1U4 118 aa21.9■■□□□ 1.1
SHMT1-206ENST00000579558 WDR91A4D1P6 747 aa21.9■■□□□ 1.1
SHMT1-206ENST00000579558 AQP7O14520 342 aa21.9■■□□□ 1.1
SHMT1-206ENST00000579558 AKAP10O43572 662 aa21.9■■□□□ 1.1
SHMT1-206ENST00000579558 SUSD5O60279 629 aa21.9■■□□□ 1.1
SHMT1-206ENST00000579558 HCN1O60741 890 aa21.9■■□□□ 1.1
SHMT1-206ENST00000579558 COQ9O75208 318 aa21.9■■□□□ 1.1
SHMT1-206ENST00000579558 SLITRK5O94991 958 aa21.9■■□□□ 1.1
SHMT1-206ENST00000579558 GDF1P27539 372 aa21.9■■□□□ 1.1
SHMT1-206ENST00000579558 MC3RP41968 323 aa21.9■■□□□ 1.1
SHMT1-206ENST00000579558 CORO7P57737 925 aa21.9■■□□□ 1.1
SHMT1-206ENST00000579558 DESI1Q6ICB0 168 aa21.9■■□□□ 1.1
SHMT1-206ENST00000579558 TMEM107Q6UX40 140 aa21.9■■□□□ 1.1
SHMT1-206ENST00000579558 PACS2Q86VP3 889 aa21.9■■□□□ 1.1
SHMT1-206ENST00000579558 TMBIM1Q969X1 311 aa21.9■■□□□ 1.1
SHMT1-206ENST00000579558 VSTM2LQ96N03 204 aa21.9■■□□□ 1.1
SHMT1-206ENST00000579558 AMDHD1Q96NU7 426 aa21.9■■□□□ 1.1
SHMT1-206ENST00000579558 ZDHHC2Q9UIJ5 367 aa21.9■■□□□ 1.1
SHMT1-206ENST00000579558 A0A087WV62 115 aa21.89■■□□□ 1.09
SHMT1-206ENST00000579558 BCKDKO14874 412 aa21.89■■□□□ 1.09
SHMT1-206ENST00000579558 TM9SF1O15321 606 aa21.89■■□□□ 1.09
SHMT1-206ENST00000579558 UGT2B11O75310 529 aa21.89■■□□□ 1.09
SHMT1-206ENST00000579558 SKAP2O75563 359 aaPredicted RBP21.89■■□□□ 1.09
SHMT1-206ENST00000579558 MYZAPP0CAP1 466 aa21.89■■□□□ 1.09
SHMT1-206ENST00000579558 CT45A8P0DMV1 189 aa21.89■■□□□ 1.09
SHMT1-206ENST00000579558 CT45A9P0DMV2 189 aa21.89■■□□□ 1.09
SHMT1-206ENST00000579558 AGAP20933 346 aa21.89■■□□□ 1.09
SHMT1-206ENST00000579558 ZNF155Q12901 538 aaPredicted RBP21.89■■□□□ 1.09
SHMT1-206ENST00000579558 CT45A2Q5DJT8 189 aa21.89■■□□□ 1.09
SHMT1-206ENST00000579558 TNFAIP8L3Q5GJ75 292 aa21.89■■□□□ 1.09
SHMT1-206ENST00000579558 EMC4Q5J8M3 183 aa21.89■■□□□ 1.09
SHMT1-206ENST00000579558 ANKRD26P1Q6NSI1 321 aa21.89■■□□□ 1.09
SHMT1-206ENST00000579558 OR5M9Q8NGP3 310 aa21.89■■□□□ 1.09
SHMT1-206ENST00000579558 CLHC1Q8NHS4 586 aa21.89■■□□□ 1.09
SHMT1-206ENST00000579558 PPCDCQ96CD2 204 aa21.89■■□□□ 1.09
SHMT1-206ENST00000579558 PPP3R2Q96LZ3 170 aa21.89■■□□□ 1.09
SHMT1-206ENST00000579558 NODALQ96S42 347 aa21.89■■□□□ 1.09
SHMT1-206ENST00000579558 REEP4Q9H6H4 257 aa21.89■■□□□ 1.09
SHMT1-206ENST00000579558 PNPLA3Q9NST1 481 aa21.89■■□□□ 1.09
SHMT1-206ENST00000579558 TNFRSF10DQ9UBN6 386 aa21.89■■□□□ 1.09
SHMT1-206ENST00000579558 GIMAP2Q9UG22 337 aa21.89■■□□□ 1.09
SHMT1-206ENST00000579558 BAIAP2L1Q9UHR4 511 aa21.89■■□□□ 1.09
SHMT1-206ENST00000579558 KLF2Q9Y5W3 355 aaPredicted RBP21.89■■□□□ 1.09
SHMT1-206ENST00000579558 PLOD2O00469 737 aa21.88■■□□□ 1.09
SHMT1-206ENST00000579558 PDPK1O15530 556 aa21.88■■□□□ 1.09
SHMT1-206ENST00000579558 REM1O75628 298 aa21.88■■□□□ 1.09
SHMT1-206ENST00000579558 HSPA4LO95757 839 aa21.88■■□□□ 1.09
SHMT1-206ENST00000579558 CHI3L2Q15782 390 aa21.88■■□□□ 1.09
SHMT1-206ENST00000579558 GXYLT1Q4G148 440 aa21.88■■□□□ 1.09
SHMT1-206ENST00000579558 XKR7Q5GH72 579 aa21.88■■□□□ 1.09
SHMT1-206ENST00000579558 TMEM81Q6P7N7 255 aa21.88■■□□□ 1.09
SHMT1-206ENST00000579558 LRIG3Q6UXM1 1119 aa21.88■■□□□ 1.09
SHMT1-206ENST00000579558 NPSR1Q6W5P4 371 aa21.88■■□□□ 1.09
SHMT1-206ENST00000579558 SLC44A2Q8IWA5 706 aaPredicted RBP21.88■■□□□ 1.09
SHMT1-206ENST00000579558 SARAFQ96BY9 339 aa21.88■■□□□ 1.09
SHMT1-206ENST00000579558 PGM2Q96G03 612 aa21.88■■□□□ 1.09
SHMT1-206ENST00000579558 ZNF764Q96H86 408 aaPredicted RBP21.88■■□□□ 1.09
SHMT1-206ENST00000579558 TMEM41AQ96HV5 264 aa21.88■■□□□ 1.09
SHMT1-206ENST00000579558 COL21A1Q96P44 957 aa21.88■■□□□ 1.09
SHMT1-206ENST00000579558 OSBPL11Q9BXB4 747 aa21.88■■□□□ 1.09
SHMT1-206ENST00000579558 SLC6A15Q9H2J7 730 aa21.88■■□□□ 1.09
SHMT1-206ENST00000579558 ACKR4Q9NPB9 350 aa21.88■■□□□ 1.09
SHMT1-206ENST00000579558 KCNK9Q9NPC2 374 aa21.88■■□□□ 1.09
SHMT1-206ENST00000579558 DDX18Q9NVP1 670 aaKnown RBP21.88■■□□□ 1.09
SHMT1-206ENST00000579558 ACAD8Q9UKU7 415 aa21.88■■□□□ 1.09
SHMT1-206ENST00000579558 C19orf53Q9UNZ5 99 aaPredicted RBP21.88■■□□□ 1.09
SHMT1-206ENST00000579558 ACTL7BQ9Y614 415 aa21.88■■□□□ 1.09
SHMT1-206ENST00000579558 TEX15Q9BXT5 2789 aa21.87■■□□□ 1.09
SHMT1-206ENST00000579558 OR6C70A6NIJ9 312 aa21.87■■□□□ 1.09
SHMT1-206ENST00000579558 BIRC5O15392 142 aa21.87■■□□□ 1.09
SHMT1-206ENST00000579558 PEX11AO75192 247 aa21.87■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 51.9 ms