RNA–Protein interactions for RNA: ENST00000565023.1

VPS9D1-204, Transcript of VPS9 domain containing 1, humanhuman

APPRIS ALT2 TSL 5

Gene VPS9D1, Length 775 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-204ENST00000565023 ACAD8Q9UKU7 415 aa12.52□□□□□ -0.41
VPS9D1-204ENST00000565023 ZFHX3Q15911 3703 aa12.51□□□□□ -0.41
VPS9D1-204ENST00000565023 TRGV5A0A0B4J1U4 118 aa12.51□□□□□ -0.41
VPS9D1-204ENST00000565023 C2orf72A6NCS6 295 aa12.51□□□□□ -0.41
VPS9D1-204ENST00000565023 LRRC3CA6NJW4 275 aa12.51□□□□□ -0.41
VPS9D1-204ENST00000565023 FAM90A27PA6NNH2 459 aa12.51□□□□□ -0.41
VPS9D1-204ENST00000565023 C19orf84I3L1E1 186 aa12.51□□□□□ -0.41
VPS9D1-204ENST00000565023 SLC28A1O00337 649 aa12.51□□□□□ -0.41
VPS9D1-204ENST00000565023 GNB5O14775 395 aa12.51□□□□□ -0.41
VPS9D1-204ENST00000565023 HNRNPRO43390 633 aaKnown RBP12.51□□□□□ -0.41
VPS9D1-204ENST00000565023 LYPLA1O75608 230 aaPredicted RBP12.51□□□□□ -0.41
VPS9D1-204ENST00000565023 TRAPPC6AO75865 159 aa12.51□□□□□ -0.41
VPS9D1-204ENST00000565023 SNUPNO95149 360 aaKnown RBP12.51□□□□□ -0.41
VPS9D1-204ENST00000565023 HSPA4LO95757 839 aa12.51□□□□□ -0.41
VPS9D1-204ENST00000565023 ATP1B1P05026 303 aa12.51□□□□□ -0.41
VPS9D1-204ENST00000565023 NEFHP12036 1026 aa12.51□□□□□ -0.41
VPS9D1-204ENST00000565023 DRD2P14416 443 aa12.51□□□□□ -0.41
VPS9D1-204ENST00000565023 GDF1P27539 372 aa12.51□□□□□ -0.41
VPS9D1-204ENST00000565023 TMED10P49755 219 aaKnown RBP12.51□□□□□ -0.41
VPS9D1-204ENST00000565023 ABCE1P61221 599 aaKnown RBP12.51□□□□□ -0.41
VPS9D1-204ENST00000565023 PLCXD2Q0VAA5 305 aa12.51□□□□□ -0.41
VPS9D1-204ENST00000565023 KIAA0040Q15053 153 aa12.51□□□□□ -0.41
VPS9D1-204ENST00000565023 TOMM20Q15388 145 aa12.51□□□□□ -0.41
VPS9D1-204ENST00000565023 EMC4Q5J8M3 183 aa12.51□□□□□ -0.41
VPS9D1-204ENST00000565023 Q6ZSR9 355 aa12.51□□□□□ -0.41
VPS9D1-204ENST00000565023 TICAM1Q8IUC6 712 aa12.51□□□□□ -0.41
VPS9D1-204ENST00000565023 DND1Q8IYX4 353 aaKnown RBP12.51□□□□□ -0.41
VPS9D1-204ENST00000565023 LIX1Q8N485 282 aa12.51□□□□□ -0.41
VPS9D1-204ENST00000565023 MARVELD2Q8N4S9 558 aa12.51□□□□□ -0.41
VPS9D1-204ENST00000565023 SPPL2AQ8TCT8 520 aa12.51□□□□□ -0.41
VPS9D1-204ENST00000565023 PHF10Q8WUB8 498 aaKnown RBP12.51□□□□□ -0.41
VPS9D1-204ENST00000565023 TWIST2Q8WVJ9 160 aa12.51□□□□□ -0.41
VPS9D1-204ENST00000565023 OMA1Q96E52 524 aa12.51□□□□□ -0.41
VPS9D1-204ENST00000565023 ZNF597Q96LX8 424 aa12.51□□□□□ -0.41
VPS9D1-204ENST00000565023 RILPQ96NA2 401 aa12.51□□□□□ -0.41
VPS9D1-204ENST00000565023 PAIP2Q9BPZ3 127 aaKnown RBP12.51□□□□□ -0.41
VPS9D1-204ENST00000565023 C20orf27Q9GZN8 174 aa12.51□□□□□ -0.41
VPS9D1-204ENST00000565023 ZNF703Q9H7S9 590 aaPredicted RBP12.51□□□□□ -0.41
VPS9D1-204ENST00000565023 ZNF395Q9H8N7 513 aaPredicted RBP12.51□□□□□ -0.41
VPS9D1-204ENST00000565023 ZFP64Q9NPA5 681 aa12.51□□□□□ -0.41
VPS9D1-204ENST00000565023 MIEF1Q9NQG6 463 aa12.51□□□□□ -0.41
VPS9D1-204ENST00000565023 COQ3Q9NZJ6 369 aa12.51□□□□□ -0.41
VPS9D1-204ENST00000565023 SPRR3Q9UBC9 169 aa12.51□□□□□ -0.41
VPS9D1-204ENST00000565023 HAO1Q9UJM8 370 aa12.51□□□□□ -0.41
VPS9D1-204ENST00000565023 CFL2Q9Y281 166 aa12.51□□□□□ -0.41
VPS9D1-204ENST00000565023 EPB41L3Q9Y2J2 1087 aaPredicted RBP12.51□□□□□ -0.41
VPS9D1-204ENST00000565023 KLF2Q9Y5W3 355 aaPredicted RBP12.51□□□□□ -0.41
VPS9D1-204ENST00000565023 UQCRHLA0A096LP55 91 aa12.5□□□□□ -0.41
VPS9D1-204ENST00000565023 HMGB1P1B2RPK0 211 aaPredicted RBP12.5□□□□□ -0.41
VPS9D1-204ENST00000565023 RGS14O43566 566 aa12.5□□□□□ -0.41
VPS9D1-204ENST00000565023 SEC22BO75396 215 aa12.5□□□□□ -0.41
VPS9D1-204ENST00000565023 JUNP05412 331 aaKnown RBP12.5□□□□□ -0.41
VPS9D1-204ENST00000565023 COX6B1P14854 86 aa12.5□□□□□ -0.41
VPS9D1-204ENST00000565023 ABCD3P28288 659 aa12.5□□□□□ -0.41
VPS9D1-204ENST00000565023 SOX18P35713 384 aa12.5□□□□□ -0.41
VPS9D1-204ENST00000565023 GSTM5P46439 218 aa12.5□□□□□ -0.41
VPS9D1-204ENST00000565023 SLC1A6P48664 564 aa12.5□□□□□ -0.41
VPS9D1-204ENST00000565023 NUP107P57740 925 aa12.5□□□□□ -0.41
VPS9D1-204ENST00000565023 ZNF763Q0D2J5 394 aa12.5□□□□□ -0.41
VPS9D1-204ENST00000565023 BST1Q10588 318 aa12.5□□□□□ -0.41
VPS9D1-204ENST00000565023 PMPCAQ10713 525 aa12.5□□□□□ -0.41
VPS9D1-204ENST00000565023 STX3Q13277 289 aa12.5□□□□□ -0.41
VPS9D1-204ENST00000565023 PRSS53Q2L4Q9 553 aa12.5□□□□□ -0.41
VPS9D1-204ENST00000565023 ZNF630Q2M218 657 aaPredicted RBP12.5□□□□□ -0.41
VPS9D1-204ENST00000565023 ZNF628Q5EBL2 1059 aa12.5□□□□□ -0.41
VPS9D1-204ENST00000565023 CCDC71Q8IV32 467 aaPredicted RBP12.5□□□□□ -0.41
VPS9D1-204ENST00000565023 FAM9CQ8IZT9 166 aa12.5□□□□□ -0.41
VPS9D1-204ENST00000565023 GOLGA6L1Q8N7Z2 621 aa12.5□□□□□ -0.41
VPS9D1-204ENST00000565023 OR10Q1Q8NGQ4 319 aa12.5□□□□□ -0.41
VPS9D1-204ENST00000565023 OR2T11Q8NH01 316 aa12.5□□□□□ -0.41
VPS9D1-204ENST00000565023 FAM76AQ8TAV0 307 aa12.5□□□□□ -0.41
VPS9D1-204ENST00000565023 AGR3Q8TD06 166 aa12.5□□□□□ -0.41
VPS9D1-204ENST00000565023 MGARPQ8TDB4 240 aa12.5□□□□□ -0.41
VPS9D1-204ENST00000565023 CA5BP1Q8WTZ4 195 aa12.5□□□□□ -0.41
VPS9D1-204ENST00000565023 GFM2Q969S9 779 aaKnown RBP12.5□□□□□ -0.41
VPS9D1-204ENST00000565023 LCORQ96JN0 433 aaPredicted RBP12.5□□□□□ -0.41
VPS9D1-204ENST00000565023 SORT1Q99523 831 aa12.5□□□□□ -0.41
VPS9D1-204ENST00000565023 METTL7AQ9H8H3 244 aa12.5□□□□□ -0.41
VPS9D1-204ENST00000565023 SLC35C2Q9NQQ7 365 aa12.5□□□□□ -0.41
VPS9D1-204ENST00000565023 ZNF446Q9NWS9 450 aa12.5□□□□□ -0.41
VPS9D1-204ENST00000565023 C1orf109Q9NX04 203 aa12.5□□□□□ -0.41
VPS9D1-204ENST00000565023 B4GALT7Q9UBV7 327 aa12.5□□□□□ -0.41
VPS9D1-204ENST00000565023 ZNF639Q9UID6 485 aa12.5□□□□□ -0.41
VPS9D1-204ENST00000565023 ARHGAP21Q5T5U3 1957 aa12.5□□□□□ -0.41
VPS9D1-204ENST00000565023 C15orf38-AP3S2A0A0A6YYH1 394 aa12.49□□□□□ -0.41
VPS9D1-204ENST00000565023 AQP7O14520 342 aa12.49□□□□□ -0.41
VPS9D1-204ENST00000565023 BCKDKO14874 412 aa12.49□□□□□ -0.41
VPS9D1-204ENST00000565023 PIP5K1BO14986 540 aa12.49□□□□□ -0.41
VPS9D1-204ENST00000565023 REM1O75628 298 aa12.49□□□□□ -0.41
VPS9D1-204ENST00000565023 PPM1BO75688 479 aa12.49□□□□□ -0.41
VPS9D1-204ENST00000565023 IGHG3P01860 377 aa12.49□□□□□ -0.41
VPS9D1-204ENST00000565023 ABCB1P08183 1280 aaPredicted RBP12.49□□□□□ -0.41
VPS9D1-204ENST00000565023 LINC00032P0C843 101 aa12.49□□□□□ -0.41
VPS9D1-204ENST00000565023 PRF1P14222 555 aa12.49□□□□□ -0.41
VPS9D1-204ENST00000565023 CASP3P42574 277 aa12.49□□□□□ -0.41
VPS9D1-204ENST00000565023 EMDP50402 254 aa12.49□□□□□ -0.41
VPS9D1-204ENST00000565023 NCBP2P52298 156 aaKnown RBP eCLIP12.49□□□□□ -0.41
VPS9D1-204ENST00000565023 RPP38P78345 283 aaKnown RBP12.49□□□□□ -0.41
VPS9D1-204ENST00000565023 XKR7Q5GH72 579 aa12.49□□□□□ -0.41
VPS9D1-204ENST00000565023 WLSQ5T9L3 541 aa12.49□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 53.1 ms