RNA–Protein interactions for RNA: ENST00000561797.1

VPS39-203, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 545 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-203ENST00000561797 HCN1O60741 890 aa14.35□□□□□ -0.11
VPS39-203ENST00000561797 REM1O75628 298 aa14.35□□□□□ -0.11
VPS39-203ENST00000561797 TRAPPC6AO75865 159 aa14.35□□□□□ -0.11
VPS39-203ENST00000561797 NAGAP17050 411 aa14.35□□□□□ -0.11
VPS39-203ENST00000561797 PRPH2P23942 346 aa14.35□□□□□ -0.11
VPS39-203ENST00000561797 NTSP30990 170 aa14.35□□□□□ -0.11
VPS39-203ENST00000561797 CORO7P57737 925 aa14.35□□□□□ -0.11
VPS39-203ENST00000561797 ZNF630Q2M218 657 aaPredicted RBP14.35□□□□□ -0.11
VPS39-203ENST00000561797 GALNTL6Q49A17 601 aa14.35□□□□□ -0.11
VPS39-203ENST00000561797 HGDQ93099 445 aa14.35□□□□□ -0.11
VPS39-203ENST00000561797 TMBIM1Q969X1 311 aa14.35□□□□□ -0.11
VPS39-203ENST00000561797 MARVELD3Q96A59 401 aa14.35□□□□□ -0.11
VPS39-203ENST00000561797 SARAFQ96BY9 339 aa14.35□□□□□ -0.11
VPS39-203ENST00000561797 METTL2AQ96IZ6 378 aaKnown RBP14.35□□□□□ -0.11
VPS39-203ENST00000561797 GNRHR2Q96P88 292 aa14.35□□□□□ -0.11
VPS39-203ENST00000561797 NODALQ96S42 347 aa14.35□□□□□ -0.11
VPS39-203ENST00000561797 SECISBP2Q96T21 854 aaKnown RBP14.35□□□□□ -0.11
VPS39-203ENST00000561797 FOLH1BQ9HBA9 442 aa14.35□□□□□ -0.11
VPS39-203ENST00000561797 EML4Q9HC35 981 aaKnown RBP14.35□□□□□ -0.11
VPS39-203ENST00000561797 ALKBH4Q9NXW9 302 aa14.35□□□□□ -0.11
VPS39-203ENST00000561797 COQ3Q9NZJ6 369 aa14.35□□□□□ -0.11
VPS39-203ENST00000561797 GPR55Q9Y2T6 319 aaPredicted RBP14.35□□□□□ -0.11
VPS39-203ENST00000561797 WBP11Q9Y2W2 641 aaKnown RBP14.35□□□□□ -0.11
VPS39-203ENST00000561797 TRAF6Q9Y4K3 522 aa14.35□□□□□ -0.11
VPS39-203ENST00000561797 FRG2CA6NGY1 282 aa14.34□□□□□ -0.11
VPS39-203ENST00000561797 RGS16O15492 202 aaPredicted RBP14.34□□□□□ -0.11
VPS39-203ENST00000561797 HNRNPRO43390 633 aaKnown RBP14.34□□□□□ -0.11
VPS39-203ENST00000561797 AKAP10O43572 662 aa14.34□□□□□ -0.11
VPS39-203ENST00000561797 PLOD3O60568 738 aa14.34□□□□□ -0.11
VPS39-203ENST00000561797 UGT2B11O75310 529 aa14.34□□□□□ -0.11
VPS39-203ENST00000561797 ERN1O75460 977 aaKnown RBP14.34□□□□□ -0.11
VPS39-203ENST00000561797 SNX4O95219 450 aa14.34□□□□□ -0.11
VPS39-203ENST00000561797 FGF4P08620 206 aa14.34□□□□□ -0.11
VPS39-203ENST00000561797 CT45A8P0DMV1 189 aa14.34□□□□□ -0.11
VPS39-203ENST00000561797 CT45A9P0DMV2 189 aa14.34□□□□□ -0.11
VPS39-203ENST00000561797 NEFHP12036 1026 aa14.34□□□□□ -0.11
VPS39-203ENST00000561797 ENDOUP21128 410 aaKnown RBP14.34□□□□□ -0.11
VPS39-203ENST00000561797 NUP107P57740 925 aa14.34□□□□□ -0.11
VPS39-203ENST00000561797 RPL38P63173 70 aaKnown RBP14.34□□□□□ -0.11
VPS39-203ENST00000561797 ZNF844Q08AG5 666 aa14.34□□□□□ -0.11
VPS39-203ENST00000561797 PMPCAQ10713 525 aa14.34□□□□□ -0.11
VPS39-203ENST00000561797 TOMM20Q15388 145 aa14.34□□□□□ -0.11
VPS39-203ENST00000561797 RFTN2Q52LD8 501 aaPredicted RBP14.34□□□□□ -0.11
VPS39-203ENST00000561797 CT45A2Q5DJT8 189 aa14.34□□□□□ -0.11
VPS39-203ENST00000561797 SH2D4BQ5SQS7 431 aa14.34□□□□□ -0.11
VPS39-203ENST00000561797 WLSQ5T9L3 541 aa14.34□□□□□ -0.11
VPS39-203ENST00000561797 ANKRD26P1Q6NSI1 321 aa14.34□□□□□ -0.11
VPS39-203ENST00000561797 TMEM107Q6UX40 140 aa14.34□□□□□ -0.11
VPS39-203ENST00000561797 ANGPTL8Q6UXH0 198 aa14.34□□□□□ -0.11
VPS39-203ENST00000561797 IKBIPQ70UQ0 350 aa14.34□□□□□ -0.11
VPS39-203ENST00000561797 CLYBLQ8N0X4 340 aa14.34□□□□□ -0.11
VPS39-203ENST00000561797 LIX1Q8N485 282 aa14.34□□□□□ -0.11
VPS39-203ENST00000561797 CA5BP1Q8WTZ4 195 aa14.34□□□□□ -0.11
VPS39-203ENST00000561797 TWIST2Q8WVJ9 160 aa14.34□□□□□ -0.11
VPS39-203ENST00000561797 ERP27Q96DN0 273 aa14.34□□□□□ -0.11
VPS39-203ENST00000561797 TSSK3Q96PN8 268 aa14.34□□□□□ -0.11
VPS39-203ENST00000561797 CENPHQ9H3R5 247 aa14.34□□□□□ -0.11
VPS39-203ENST00000561797 GLIPR2Q9H4G4 154 aa14.34□□□□□ -0.11
VPS39-203ENST00000561797 CHST11Q9NPF2 352 aa14.34□□□□□ -0.11
VPS39-203ENST00000561797 QPCTLQ9NXS2 382 aa14.34□□□□□ -0.11
VPS39-203ENST00000561797 TAS2R9Q9NYW1 312 aa14.34□□□□□ -0.11
VPS39-203ENST00000561797 TAS2R7Q9NYW3 318 aa14.34□□□□□ -0.11
VPS39-203ENST00000561797 KLRF1Q9NZS2 232 aa14.34□□□□□ -0.11
VPS39-203ENST00000561797 SPRR3Q9UBC9 169 aa14.34□□□□□ -0.11
VPS39-203ENST00000561797 BAIAP2L1Q9UHR4 511 aa14.34□□□□□ -0.11
VPS39-203ENST00000561797 RAB21Q9UL25 225 aa14.34□□□□□ -0.11
VPS39-203ENST00000561797 NUP214P35658 2090 aaPredicted RBP14.34□□□□□ -0.11
VPS39-203ENST00000561797 WDR91A4D1P6 747 aa14.33□□□□□ -0.12
VPS39-203ENST00000561797 FIGNL2A6NMB9 653 aa14.33□□□□□ -0.12
VPS39-203ENST00000561797 NPIPB8E9PQR5 432 aa14.33□□□□□ -0.12
VPS39-203ENST00000561797 C19orf84I3L1E1 186 aa14.33□□□□□ -0.12
VPS39-203ENST00000561797 PIP5K1BO14986 540 aa14.33□□□□□ -0.12
VPS39-203ENST00000561797 TO15178 435 aa14.33□□□□□ -0.12
VPS39-203ENST00000561797 CTIFO43310 598 aaKnown RBP14.33□□□□□ -0.12
VPS39-203ENST00000561797 TYROBPO43914 113 aa14.33□□□□□ -0.12
VPS39-203ENST00000561797 ICOSLGO75144 302 aa14.33□□□□□ -0.12
VPS39-203ENST00000561797 BPGMP07738 259 aa14.33□□□□□ -0.12
VPS39-203ENST00000561797 SDC1P18827 310 aa14.33□□□□□ -0.12
VPS39-203ENST00000561797 ACVR2AP27037 513 aa14.33□□□□□ -0.12
VPS39-203ENST00000561797 MC3RP41968 323 aa14.33□□□□□ -0.12
VPS39-203ENST00000561797 ZNF155Q12901 538 aaPredicted RBP14.33□□□□□ -0.12
VPS39-203ENST00000561797 UGT3A2Q3SY77 523 aa14.33□□□□□ -0.12
VPS39-203ENST00000561797 FNDC7Q5VTL7 733 aa14.33□□□□□ -0.12
VPS39-203ENST00000561797 NPSR1Q6W5P4 371 aa14.33□□□□□ -0.12
VPS39-203ENST00000561797 SLC44A2Q8IWA5 706 aaPredicted RBP14.33□□□□□ -0.12
VPS39-203ENST00000561797 CLHC1Q8NHS4 586 aa14.33□□□□□ -0.12
VPS39-203ENST00000561797 NEIL3Q8TAT5 605 aa14.33□□□□□ -0.12
VPS39-203ENST00000561797 RND1Q92730 232 aa14.33□□□□□ -0.12
VPS39-203ENST00000561797 TMEM41AQ96HV5 264 aa14.33□□□□□ -0.12
VPS39-203ENST00000561797 VSTM2LQ96N03 204 aa14.33□□□□□ -0.12
VPS39-203ENST00000561797 AMDHD1Q96NU7 426 aa14.33□□□□□ -0.12
VPS39-203ENST00000561797 COL21A1Q96P44 957 aa14.33□□□□□ -0.12
VPS39-203ENST00000561797 BTBD9Q96Q07 612 aa14.33□□□□□ -0.12
VPS39-203ENST00000561797 OSBPL11Q9BXB4 747 aa14.33□□□□□ -0.12
VPS39-203ENST00000561797 STMN4Q9H169 189 aaPredicted RBP14.33□□□□□ -0.12
VPS39-203ENST00000561797 GALNT9Q9HCQ5 603 aa14.33□□□□□ -0.12
VPS39-203ENST00000561797 ACKR4Q9NPB9 350 aa14.33□□□□□ -0.12
VPS39-203ENST00000561797 GIMAP2Q9UG22 337 aa14.33□□□□□ -0.12
VPS39-203ENST00000561797 RNF6Q9Y252 685 aa14.33□□□□□ -0.12
VPS39-203ENST00000561797 KIAA1549Q9HCM3 1950 aa14.33□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms