RNA–Protein interactions for RNA: ENST00000561381.5

USP3-220, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2

Gene USP3, Length 979 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-220ENST00000561381 CTHRC1Q96CG8 243 aa10.6□□□□□ -0.71
USP3-220ENST00000561381 KLHL29Q96CT2 875 aa10.6□□□□□ -0.71
USP3-220ENST00000561381 HSPBAP1Q96EW2 488 aa10.6□□□□□ -0.71
USP3-220ENST00000561381 RMND5BQ96G75 393 aaPredicted RBP10.6□□□□□ -0.71
USP3-220ENST00000561381 LCORQ96JN0 433 aaPredicted RBP10.6□□□□□ -0.71
USP3-220ENST00000561381 ZNF681Q96N22 645 aa10.6□□□□□ -0.71
USP3-220ENST00000561381 MRPL57Q9BQC6 102 aaKnown RBP10.6□□□□□ -0.71
USP3-220ENST00000561381 OSBPL11Q9BXB4 747 aa10.6□□□□□ -0.71
USP3-220ENST00000561381 MRPL46Q9H2W6 279 aaKnown RBP10.6□□□□□ -0.71
USP3-220ENST00000561381 SERHLQ9NQF3 203 aa10.6□□□□□ -0.71
USP3-220ENST00000561381 HEY2Q9UBP5 337 aa10.6□□□□□ -0.71
USP3-220ENST00000561381 MTRF1LQ9UGC7 380 aaKnown RBP10.6□□□□□ -0.71
USP3-220ENST00000561381 TMCO1Q9UM00 188 aa10.6□□□□□ -0.71
USP3-220ENST00000561381 GOLGA6L10A6NI86 522 aa10.59□□□□□ -0.71
USP3-220ENST00000561381 EEF1E1-BLOC1S5C9J1V9 151 aa10.59□□□□□ -0.71
USP3-220ENST00000561381 EEF1E1O43324 174 aaKnown RBP10.59□□□□□ -0.71
USP3-220ENST00000561381 GUCY1B2O75343 617 aa10.59□□□□□ -0.71
USP3-220ENST00000561381 URI1O94763 535 aaPredicted RBP10.59□□□□□ -0.71
USP3-220ENST00000561381 COL6A2P12110 1019 aa10.59□□□□□ -0.71
USP3-220ENST00000561381 NAGAP17050 411 aa10.59□□□□□ -0.71
USP3-220ENST00000561381 CTSSP25774 331 aa10.59□□□□□ -0.71
USP3-220ENST00000561381 ECHS1P30084 290 aa10.59□□□□□ -0.71
USP3-220ENST00000561381 HSD17B3P37058 310 aa10.59□□□□□ -0.71
USP3-220ENST00000561381 SERPINB9P50453 376 aa10.59□□□□□ -0.71
USP3-220ENST00000561381 SRYQ05066 204 aa10.59□□□□□ -0.71
USP3-220ENST00000561381 FOXF2Q12947 444 aa10.59□□□□□ -0.71
USP3-220ENST00000561381 TEX35Q5T0J7 233 aa10.59□□□□□ -0.71
USP3-220ENST00000561381 SLC30A6Q6NXT4 461 aa10.59□□□□□ -0.71
USP3-220ENST00000561381 NUP54Q7Z3B4 507 aa10.59□□□□□ -0.71
USP3-220ENST00000561381 TGIF2LYQ8IUE0 185 aa10.59□□□□□ -0.71
USP3-220ENST00000561381 CDYL2Q8N8U2 506 aa10.59□□□□□ -0.71
USP3-220ENST00000561381 NOA1Q8NC60 698 aaKnown RBP10.59□□□□□ -0.71
USP3-220ENST00000561381 IFT81Q8WYA0 676 aa10.59□□□□□ -0.71
USP3-220ENST00000561381 TMBIM1Q969X1 311 aa10.59□□□□□ -0.71
USP3-220ENST00000561381 USB1Q9BQ65 265 aaKnown RBP10.59□□□□□ -0.71
USP3-220ENST00000561381 TUBA1CQ9BQE3 449 aa10.59□□□□□ -0.71
USP3-220ENST00000561381 CALHM2Q9HA72 323 aa10.59□□□□□ -0.71
USP3-220ENST00000561381 BRF2Q9HAW0 419 aa10.59□□□□□ -0.71
USP3-220ENST00000561381 KLRF1Q9NZS2 232 aa10.59□□□□□ -0.71
USP3-220ENST00000561381 UTS2RQ9UKP6 389 aa10.59□□□□□ -0.71
USP3-220ENST00000561381 SNX6Q9UNH7 406 aa10.59□□□□□ -0.71
USP3-220ENST00000561381 EXO1Q9UQ84 846 aaKnown RBP10.59□□□□□ -0.71
USP3-220ENST00000561381 CFL2Q9Y281 166 aa10.59□□□□□ -0.71
USP3-220ENST00000561381 ACANP16112 2415 aa10.58□□□□□ -0.72
USP3-220ENST00000561381 ZNF469Q96JG9 3925 aaPredicted RBP10.58□□□□□ -0.72
USP3-220ENST00000561381 PRAMEF25A6NGN4 478 aa10.58□□□□□ -0.72
USP3-220ENST00000561381 TUBAL3A6NHL2 446 aa10.58□□□□□ -0.72
USP3-220ENST00000561381 C17orf51A8MQB3 221 aa10.58□□□□□ -0.72
USP3-220ENST00000561381 B4DXG7 233 aa10.58□□□□□ -0.72
USP3-220ENST00000561381 MANBAO00462 879 aa10.58□□□□□ -0.72
USP3-220ENST00000561381 ACOX3O15254 700 aa10.58□□□□□ -0.72
USP3-220ENST00000561381 CTAGE8P0CG41 777 aa10.58□□□□□ -0.72
USP3-220ENST00000561381 KLK2P20151 261 aa10.58□□□□□ -0.72
USP3-220ENST00000561381 DRD5P21918 477 aa10.58□□□□□ -0.72
USP3-220ENST00000561381 PEX19P40855 299 aa10.58□□□□□ -0.72
USP3-220ENST00000561381 PPICP45877 212 aa10.58□□□□□ -0.72
USP3-220ENST00000561381 STARP49675 285 aa10.58□□□□□ -0.72
USP3-220ENST00000561381 MMP16P51512 607 aa10.58□□□□□ -0.72
USP3-220ENST00000561381 CORO7P57737 925 aa10.58□□□□□ -0.72
USP3-220ENST00000561381 RAE1P78406 368 aaKnown RBP10.58□□□□□ -0.72
USP3-220ENST00000561381 CLCQ05315 142 aa10.58□□□□□ -0.72
USP3-220ENST00000561381 DAZAP2Q15038 168 aaPredicted RBP10.58□□□□□ -0.72
USP3-220ENST00000561381 UNC50Q53HI1 259 aa10.58□□□□□ -0.72
USP3-220ENST00000561381 ZNF628Q5EBL2 1059 aa10.58□□□□□ -0.72
USP3-220ENST00000561381 TMEM81Q6P7N7 255 aa10.58□□□□□ -0.72
USP3-220ENST00000561381 TAOK1Q7L7X3 1001 aa10.58□□□□□ -0.72
USP3-220ENST00000561381 TRIM42Q8IWZ5 723 aa10.58□□□□□ -0.72
USP3-220ENST00000561381 CTAGE4Q8IX94 777 aa10.58□□□□□ -0.72
USP3-220ENST00000561381 CCDC116Q8IYX3 515 aa10.58□□□□□ -0.72
USP3-220ENST00000561381 OR14L1PQ8NHC6 308 aa10.58□□□□□ -0.72
USP3-220ENST00000561381 GOT1L1Q8NHS2 421 aaPredicted RBP10.58□□□□□ -0.72
USP3-220ENST00000561381 ZPLD1Q8TCW7 415 aa10.58□□□□□ -0.72
USP3-220ENST00000561381 KAT2AQ92830 837 aa10.58□□□□□ -0.72
USP3-220ENST00000561381 LRRC46Q96FV0 321 aa10.58□□□□□ -0.72
USP3-220ENST00000561381 C16orf45Q96MC5 204 aaPredicted RBP10.58□□□□□ -0.72
USP3-220ENST00000561381 FMO2Q99518 471 aa10.58□□□□□ -0.72
USP3-220ENST00000561381 G6PC3Q9BUM1 346 aa10.58□□□□□ -0.72
USP3-220ENST00000561381 FAIM2Q9BWQ8 316 aa10.58□□□□□ -0.72
USP3-220ENST00000561381 C1QTNF3Q9BXJ4 246 aa10.58□□□□□ -0.72
USP3-220ENST00000561381 PFDN4Q9NQP4 134 aa10.58□□□□□ -0.72
USP3-220ENST00000561381 JKAMPQ9P055 326 aa10.58□□□□□ -0.72
USP3-220ENST00000561381 TMEM216Q9P0N5 145 aa10.58□□□□□ -0.72
USP3-220ENST00000561381 VPS29Q9UBQ0 182 aa10.58□□□□□ -0.72
USP3-220ENST00000561381 FETUBQ9UGM5 382 aa10.58□□□□□ -0.72
USP3-220ENST00000561381 TRPS1Q9UHF7 1281 aa10.58□□□□□ -0.72
USP3-220ENST00000561381 FOXD3Q9UJU5 478 aaPredicted RBP10.58□□□□□ -0.72
USP3-220ENST00000561381 ZNF180Q9UJW8 692 aa10.58□□□□□ -0.72
USP3-220ENST00000561381 FBXL2Q9UKC9 423 aa10.58□□□□□ -0.72
USP3-220ENST00000561381 PSME2Q9UL46 239 aa10.58□□□□□ -0.72
USP3-220ENST00000561381 ZNF780BQ9Y6R6 833 aa10.58□□□□□ -0.72
USP3-220ENST00000561381 MED12LQ86YW9 2145 aa10.57□□□□□ -0.72
USP3-220ENST00000561381 FRG2CA6NGY1 282 aa10.57□□□□□ -0.72
USP3-220ENST00000561381 TO15178 435 aa10.57□□□□□ -0.72
USP3-220ENST00000561381 DLX3O60479 287 aa10.57□□□□□ -0.72
USP3-220ENST00000561381 CDH16O75309 829 aa10.57□□□□□ -0.72
USP3-220ENST00000561381 REM1O75628 298 aa10.57□□□□□ -0.72
USP3-220ENST00000561381 SUPT7LO94864 414 aa10.57□□□□□ -0.72
USP3-220ENST00000561381 ESRRBO95718 433 aa10.57□□□□□ -0.72
USP3-220ENST00000561381 ACTL6AO96019 429 aa10.57□□□□□ -0.72
USP3-220ENST00000561381 IL3P08700 152 aa10.57□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 55.8 ms