RNA–Protein interactions for RNA: ENST00000560858.1

SPG11-223, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 5

Gene SPG11, Length 447 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-223ENST00000560858 UGT2A1Q9Y4X1 527 aa2.34□□□□□ -2.03
SPG11-223ENST00000560858 TRIM17Q9Y577 477 aa2.34□□□□□ -2.03
SPG11-223ENST00000560858 PCDHGA3Q9Y5H0 932 aa2.34□□□□□ -2.03
SPG11-223ENST00000560858 ORC6Q9Y5N6 252 aa2.34□□□□□ -2.03
SPG11-223ENST00000560858 OR51B4Q9Y5P0 310 aa2.34□□□□□ -2.03
SPG11-223ENST00000560858 RAI2Q9Y5P3 530 aa2.34□□□□□ -2.03
SPG11-223ENST00000560858 ZFP37Q9Y6Q3 630 aaPredicted RBP2.34□□□□□ -2.03
SPG11-223ENST00000560858 ATG2AQ2TAZ0 1938 aa2.34□□□□□ -2.04
SPG11-223ENST00000560858 MYOFQ9NZM1 2061 aa2.33□□□□□ -2.04
SPG11-223ENST00000560858 A0A075B6Q4 140 aa2.33□□□□□ -2.04
SPG11-223ENST00000560858 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP2.33□□□□□ -2.04
SPG11-223ENST00000560858 C1orf226A1L170 272 aa2.33□□□□□ -2.04
SPG11-223ENST00000560858 TRIM43BA6NCK2 446 aa2.33□□□□□ -2.04
SPG11-223ENST00000560858 PABPN1LA6NDY0 278 aaKnown RBP2.33□□□□□ -2.04
SPG11-223ENST00000560858 GLTPD2A6NH11 291 aa2.33□□□□□ -2.04
SPG11-223ENST00000560858 AGAP5A6NIR3 686 aa2.33□□□□□ -2.04
SPG11-223ENST00000560858 IQCF5A8MTL0 148 aa2.33□□□□□ -2.04
SPG11-223ENST00000560858 EFCAB9A8MZ26 197 aa2.33□□□□□ -2.04
SPG11-223ENST00000560858 H7C4K7 107 aa2.33□□□□□ -2.04
SPG11-223ENST00000560858 M0R3G1 203 aa2.33□□□□□ -2.04
SPG11-223ENST00000560858 CLIC1O00299 241 aa2.33□□□□□ -2.04
SPG11-223ENST00000560858 GNGT2O14610 69 aa2.33□□□□□ -2.04
SPG11-223ENST00000560858 SCAMP2O15127 329 aaKnown RBP2.33□□□□□ -2.04
SPG11-223ENST00000560858 ADAMDEC1O15204 470 aa2.33□□□□□ -2.04
SPG11-223ENST00000560858 SLC16A5O15375 505 aa2.33□□□□□ -2.04
SPG11-223ENST00000560858 SEPT4O43236 478 aa2.33□□□□□ -2.04
SPG11-223ENST00000560858 COCHO43405 550 aa2.33□□□□□ -2.04
SPG11-223ENST00000560858 PCDHGA12O60330 932 aa2.33□□□□□ -2.04
SPG11-223ENST00000560858 UGDHO60701 494 aa2.33□□□□□ -2.04
SPG11-223ENST00000560858 RFPL2O75678 378 aa2.33□□□□□ -2.04
SPG11-223ENST00000560858 STK16O75716 305 aa2.33□□□□□ -2.04
SPG11-223ENST00000560858 KCNK2O95069 426 aa2.33□□□□□ -2.04
SPG11-223ENST00000560858 EPN2O95208 641 aa2.33□□□□□ -2.04
SPG11-223ENST00000560858 SNX4O95219 450 aa2.33□□□□□ -2.04
SPG11-223ENST00000560858 KCNK5O95279 499 aa2.33□□□□□ -2.04
SPG11-223ENST00000560858 GJB5O95377 273 aa2.33□□□□□ -2.04
SPG11-223ENST00000560858 CLDN9O95484 217 aa2.33□□□□□ -2.04
SPG11-223ENST00000560858 PRAMEF12O95522 483 aa2.33□□□□□ -2.04
SPG11-223ENST00000560858 OLFM2O95897 454 aa2.33□□□□□ -2.04
SPG11-223ENST00000560858 PDYNP01213 254 aa2.33□□□□□ -2.04
SPG11-223ENST00000560858 TRBC1P01850 177 aa2.33□□□□□ -2.04
SPG11-223ENST00000560858 FTH1P02794 183 aa2.33□□□□□ -2.04
SPG11-223ENST00000560858 KLKB1P03952 638 aa2.33□□□□□ -2.04
SPG11-223ENST00000560858 RPLP0P05388 317 aaKnown RBP2.33□□□□□ -2.04
SPG11-223ENST00000560858 LCKP06239 509 aa2.33□□□□□ -2.04
SPG11-223ENST00000560858 CDK1P06493 297 aa2.33□□□□□ -2.04
SPG11-223ENST00000560858 C8GP07360 202 aa2.33□□□□□ -2.04
SPG11-223ENST00000560858 SRPRAP08240 638 aaKnown RBP2.33□□□□□ -2.04
SPG11-223ENST00000560858 HMBSP08397 361 aa2.33□□□□□ -2.04
SPG11-223ENST00000560858 ANXA5P08758 320 aa2.33□□□□□ -2.04
SPG11-223ENST00000560858 TRAPPC2P0DI81 140 aa2.33□□□□□ -2.04
SPG11-223ENST00000560858 TRAPPC2BP0DI82 140 aa2.33□□□□□ -2.04
SPG11-223ENST00000560858 MPC1LP0DKB6 136 aa2.33□□□□□ -2.04
SPG11-223ENST00000560858 ADORA3P0DMS8 318 aa2.33□□□□□ -2.04
SPG11-223ENST00000560858 PIPP12273 146 aaPredicted RBP2.33□□□□□ -2.04
SPG11-223ENST00000560858 CYP4B1P13584 511 aa2.33□□□□□ -2.04
SPG11-223ENST00000560858 HSD3B1P14060 373 aa2.33□□□□□ -2.04
SPG11-223ENST00000560858 CD36P16671 472 aa2.33□□□□□ -2.04
SPG11-223ENST00000560858 AMD1P17707 334 aa2.33□□□□□ -2.04
SPG11-223ENST00000560858 CTPS1P17812 591 aa2.33□□□□□ -2.04
SPG11-223ENST00000560858 GABRB1P18505 474 aa2.33□□□□□ -2.04
SPG11-223ENST00000560858 MALP21145 153 aa2.33□□□□□ -2.04
SPG11-223ENST00000560858 PRKACGP22612 351 aa2.33□□□□□ -2.04
SPG11-223ENST00000560858 PPIBP23284 216 aaKnown RBP2.33□□□□□ -2.04
SPG11-223ENST00000560858 HSD3B2P26439 372 aa2.33□□□□□ -2.04
SPG11-223ENST00000560858 PSMB9P28065 219 aa2.33□□□□□ -2.04
SPG11-223ENST00000560858 ALDH4A1P30038 563 aa2.33□□□□□ -2.04
SPG11-223ENST00000560858 SERPINB1P30740 379 aa2.33□□□□□ -2.04
SPG11-223ENST00000560858 CORO1AP31146 461 aaKnown RBP2.33□□□□□ -2.04
SPG11-223ENST00000560858 S100A3P33764 101 aa2.33□□□□□ -2.04
SPG11-223ENST00000560858 KDELR2P33947 212 aa2.33□□□□□ -2.04
SPG11-223ENST00000560858 CA5AP35218 305 aa2.33□□□□□ -2.04
SPG11-223ENST00000560858 ATP5C1P36542 298 aaKnown RBP2.33□□□□□ -2.04
SPG11-223ENST00000560858 SPAM1P38567 509 aa2.33□□□□□ -2.04
SPG11-223ENST00000560858 THPOP40225 353 aa2.33□□□□□ -2.04
SPG11-223ENST00000560858 PIK3CBP42338 1070 aa2.33□□□□□ -2.04
SPG11-223ENST00000560858 CASP3P42574 277 aa2.33□□□□□ -2.04
SPG11-223ENST00000560858 MAP2K4P45985 399 aa2.33□□□□□ -2.04
SPG11-223ENST00000560858 CSNK1DP48730 415 aa2.33□□□□□ -2.04
SPG11-223ENST00000560858 SLC11A2P49281 568 aa2.33□□□□□ -2.04
SPG11-223ENST00000560858 TMED10P49755 219 aaKnown RBP2.33□□□□□ -2.04
SPG11-223ENST00000560858 HNMTP50135 292 aa2.33□□□□□ -2.04
SPG11-223ENST00000560858 PNLIPRP1P54315 467 aa2.33□□□□□ -2.04
SPG11-223ENST00000560858 GAS1P54826 345 aa2.33□□□□□ -2.04
SPG11-223ENST00000560858 UGT2B15P54855 530 aa2.33□□□□□ -2.04
SPG11-223ENST00000560858 AP1S2P56377 157 aa2.33□□□□□ -2.04
SPG11-223ENST00000560858 VBP1P61758 197 aa2.33□□□□□ -2.04
SPG11-223ENST00000560858 RPS24P62847 133 aaKnown RBP2.33□□□□□ -2.04
SPG11-223ENST00000560858 KCNJ10P78508 379 aa2.33□□□□□ -2.04
SPG11-223ENST00000560858 B4GALNT1Q00973 533 aa2.33□□□□□ -2.04
SPG11-223ENST00000560858 HMGCS1Q01581 520 aa2.33□□□□□ -2.04
SPG11-223ENST00000560858 IFITM2Q01629 132 aa2.33□□□□□ -2.04
SPG11-223ENST00000560858 ZNF45Q02386 682 aa2.33□□□□□ -2.04
SPG11-223ENST00000560858 FCHO2Q0JRZ9 810 aa2.33□□□□□ -2.04
SPG11-223ENST00000560858 ELP6Q0PNE2 266 aa2.33□□□□□ -2.04
SPG11-223ENST00000560858 LRRC74AQ0VAA2 488 aa2.33□□□□□ -2.04
SPG11-223ENST00000560858 ELAVL2Q12926 359 aaKnown RBP2.33□□□□□ -2.04
SPG11-223ENST00000560858 NPRL3Q12980 569 aa2.33□□□□□ -2.04
SPG11-223ENST00000560858 SELENBP1Q13228 472 aa2.33□□□□□ -2.04
SPG11-223ENST00000560858 GPR17Q13304 367 aa2.33□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms