RNA–Protein interactions for RNA: ENST00000560467.1

LDLR-212, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 928 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-212ENST00000560467 EEFSECP57772 596 aaKnown RBP10.97□□□□□ -0.65
LDLR-212ENST00000560467 MAT1AQ00266 395 aaKnown RBP10.97□□□□□ -0.65
LDLR-212ENST00000560467 Q0VFX4 171 aa10.97□□□□□ -0.65
LDLR-212ENST00000560467 CAPRIN1Q14444 709 aaKnown RBP10.97□□□□□ -0.65
LDLR-212ENST00000560467 ZNF169Q14929 603 aaPredicted RBP10.97□□□□□ -0.65
LDLR-212ENST00000560467 CYP51A1Q16850 503 aa10.97□□□□□ -0.65
LDLR-212ENST00000560467 AGAP7PQ5VUJ5 663 aa10.97□□□□□ -0.65
LDLR-212ENST00000560467 NANOGP8Q6NSW7 305 aa10.97□□□□□ -0.65
LDLR-212ENST00000560467 KIRREL2Q6UWL6 708 aa10.97□□□□□ -0.65
LDLR-212ENST00000560467 IGFL2Q6UWQ7 119 aa10.97□□□□□ -0.65
LDLR-212ENST00000560467 DLEU7Q6UYE1 221 aa10.97□□□□□ -0.65
LDLR-212ENST00000560467 OVCH1Q7RTY7 1134 aa10.97□□□□□ -0.65
LDLR-212ENST00000560467 FJX1Q86VR8 437 aa10.97□□□□□ -0.65
LDLR-212ENST00000560467 MCEMP1Q8IX19 187 aa10.97□□□□□ -0.65
LDLR-212ENST00000560467 CLECL1Q8IZS7 167 aa10.97□□□□□ -0.65
LDLR-212ENST00000560467 MMP21Q8N119 569 aa10.97□□□□□ -0.65
LDLR-212ENST00000560467 DTWD1Q8N5C7 304 aa10.97□□□□□ -0.65
LDLR-212ENST00000560467 RIT1Q92963 219 aa10.97□□□□□ -0.65
LDLR-212ENST00000560467 POP5Q969H6 163 aaKnown RBP10.97□□□□□ -0.65
LDLR-212ENST00000560467 FKBP10Q96AY3 582 aa10.97□□□□□ -0.65
LDLR-212ENST00000560467 FAM120BQ96EK7 910 aaKnown RBP10.97□□□□□ -0.65
LDLR-212ENST00000560467 LRGUKQ96M69 825 aa10.97□□□□□ -0.65
LDLR-212ENST00000560467 AGAP4Q96P64 663 aa10.97□□□□□ -0.65
LDLR-212ENST00000560467 CSF3RQ99062 836 aa10.97□□□□□ -0.65
LDLR-212ENST00000560467 SPSB2Q99619 263 aa10.97□□□□□ -0.65
LDLR-212ENST00000560467 KCTD14Q9BQ13 255 aaPredicted RBP10.97□□□□□ -0.65
LDLR-212ENST00000560467 SLX1AQ9BQ83 275 aa10.97□□□□□ -0.65
LDLR-212ENST00000560467 SLC35A5Q9BS91 424 aa10.97□□□□□ -0.65
LDLR-212ENST00000560467 INPP5KQ9BT40 448 aa10.97□□□□□ -0.65
LDLR-212ENST00000560467 SPATA9Q9BWV2 254 aa10.97□□□□□ -0.65
LDLR-212ENST00000560467 ALOXE3Q9BYJ1 711 aa10.97□□□□□ -0.65
LDLR-212ENST00000560467 TGIF2Q9GZN2 237 aa10.97□□□□□ -0.65
LDLR-212ENST00000560467 PAIP1Q9H074 479 aaKnown RBP10.97□□□□□ -0.65
LDLR-212ENST00000560467 SOX17Q9H6I2 414 aaPredicted RBP10.97□□□□□ -0.65
LDLR-212ENST00000560467 NANOGQ9H9S0 305 aa10.97□□□□□ -0.65
LDLR-212ENST00000560467 DDX18Q9NVP1 670 aaKnown RBP10.97□□□□□ -0.65
LDLR-212ENST00000560467 CTSFQ9UBX1 484 aa10.97□□□□□ -0.65
LDLR-212ENST00000560467 CES1P1Q9UKY3 287 aa10.97□□□□□ -0.65
LDLR-212ENST00000560467 MKL2Q9ULH7 1088 aa10.97□□□□□ -0.65
LDLR-212ENST00000560467 PCDHB14Q9Y5E9 798 aa10.97□□□□□ -0.65
LDLR-212ENST00000560467 PCDHGB3Q9Y5G1 929 aa10.97□□□□□ -0.65
LDLR-212ENST00000560467 SVILO95425 2214 aa10.96□□□□□ -0.65
LDLR-212ENST00000560467 RNF103-CHMP3A0A140T963 221 aa10.96□□□□□ -0.65
LDLR-212ENST00000560467 PCDH17O14917 1159 aa10.96□□□□□ -0.65
LDLR-212ENST00000560467 EMC8O43402 210 aa10.96□□□□□ -0.65
LDLR-212ENST00000560467 LDB3O75112 727 aa10.96□□□□□ -0.65
LDLR-212ENST00000560467 PRKRAO75569 313 aaKnown RBP10.96□□□□□ -0.65
LDLR-212ENST00000560467 AGR2O95994 175 aa10.96□□□□□ -0.65
LDLR-212ENST00000560467 CYC1P08574 325 aa10.96□□□□□ -0.65
LDLR-212ENST00000560467 EFNA1P20827 205 aaPredicted RBP10.96□□□□□ -0.65
LDLR-212ENST00000560467 SLC6A2P23975 617 aa10.96□□□□□ -0.65
LDLR-212ENST00000560467 GRNP28799 593 aaKnown RBP10.96□□□□□ -0.65
LDLR-212ENST00000560467 CRATP43155 626 aa10.96□□□□□ -0.65
LDLR-212ENST00000560467 PRKAG1P54619 331 aa10.96□□□□□ -0.65
LDLR-212ENST00000560467 HBA1P69905 142 aa10.96□□□□□ -0.65
LDLR-212ENST00000560467 PHC1P78364 1004 aa10.96□□□□□ -0.65
LDLR-212ENST00000560467 BNIP2Q12982 314 aa10.96□□□□□ -0.65
LDLR-212ENST00000560467 GNA13Q14344 377 aa10.96□□□□□ -0.65
LDLR-212ENST00000560467 NSDHLQ15738 373 aa10.96□□□□□ -0.65
LDLR-212ENST00000560467 NKG7Q16617 165 aa10.96□□□□□ -0.65
LDLR-212ENST00000560467 ZNF385BQ569K4 471 aa10.96□□□□□ -0.65
LDLR-212ENST00000560467 RUNDC3AQ59EK9 446 aa10.96□□□□□ -0.65
LDLR-212ENST00000560467 C1orf146Q5VVC0 180 aa10.96□□□□□ -0.65
LDLR-212ENST00000560467 IRAK1BP1Q5VVH5 260 aa10.96□□□□□ -0.65
LDLR-212ENST00000560467 B3GNTL1Q67FW5 361 aaPredicted RBP10.96□□□□□ -0.65
LDLR-212ENST00000560467 SP5Q6BEB4 398 aaPredicted RBP10.96□□□□□ -0.65
LDLR-212ENST00000560467 ERICH5Q6P6B1 374 aa10.96□□□□□ -0.65
LDLR-212ENST00000560467 TMEM64Q6YI46 380 aa10.96□□□□□ -0.65
LDLR-212ENST00000560467 QSOX2Q6ZRP7 698 aa10.96□□□□□ -0.65
LDLR-212ENST00000560467 LINC00696Q6ZRV3 163 aa10.96□□□□□ -0.65
LDLR-212ENST00000560467 ZNF551Q7Z340 670 aaPredicted RBP10.96□□□□□ -0.65
LDLR-212ENST00000560467 IFNEQ86WN2 208 aa10.96□□□□□ -0.65
LDLR-212ENST00000560467 OR4N5Q8IXE1 308 aa10.96□□□□□ -0.65
LDLR-212ENST00000560467 ULK2Q8IYT8 1036 aa10.96□□□□□ -0.65
LDLR-212ENST00000560467 ST13P4Q8IZP2 240 aaPredicted RBP10.96□□□□□ -0.65
LDLR-212ENST00000560467 CATSPER1Q8NEC5 780 aa10.96□□□□□ -0.65
LDLR-212ENST00000560467 SFXN5Q8TD22 340 aa10.96□□□□□ -0.65
LDLR-212ENST00000560467 NUDT8Q8WV74 236 aa10.96□□□□□ -0.65
LDLR-212ENST00000560467 CNRIP1Q96F85 164 aaPredicted RBP10.96□□□□□ -0.65
LDLR-212ENST00000560467 ART5Q96L15 291 aa10.96□□□□□ -0.65
LDLR-212ENST00000560467 GPATCH1Q9BRR8 931 aaKnown RBP10.96□□□□□ -0.65
LDLR-212ENST00000560467 CADM1Q9BY67 442 aaKnown RBP10.96□□□□□ -0.65
LDLR-212ENST00000560467 RBCK1Q9BYM8 510 aa10.96□□□□□ -0.65
LDLR-212ENST00000560467 MUC13Q9H3R2 512 aa10.96□□□□□ -0.65
LDLR-212ENST00000560467 GLIPR2Q9H4G4 154 aa10.96□□□□□ -0.65
LDLR-212ENST00000560467 WDR54Q9H977 334 aa10.96□□□□□ -0.65
LDLR-212ENST00000560467 TPT1P8Q9HAU6 139 aa10.96□□□□□ -0.65
LDLR-212ENST00000560467 ZCCHC3Q9NUD5 404 aaKnown RBP10.96□□□□□ -0.65
LDLR-212ENST00000560467 PTGFRNQ9P2B2 879 aa10.96□□□□□ -0.65
LDLR-212ENST00000560467 TMEM181Q9P2C4 612 aa10.96□□□□□ -0.65
LDLR-212ENST00000560467 C19orf25Q9UFG5 118 aaPredicted RBP10.96□□□□□ -0.65
LDLR-212ENST00000560467 CLCA3PQ9Y6N3 262 aa10.96□□□□□ -0.65
LDLR-212ENST00000560467 HEATR5BQ9P2D3 2071 aa10.96□□□□□ -0.66
LDLR-212ENST00000560467 ASPDHA6ND91 283 aa10.95□□□□□ -0.66
LDLR-212ENST00000560467 DUXAA6NLW8 204 aa10.95□□□□□ -0.66
LDLR-212ENST00000560467 C5orf58C9J3I9 102 aa10.95□□□□□ -0.66
LDLR-212ENST00000560467 FGF17O60258 216 aa10.95□□□□□ -0.66
LDLR-212ENST00000560467 SCN2BO60939 215 aa10.95□□□□□ -0.66
LDLR-212ENST00000560467 COQ9O75208 318 aa10.95□□□□□ -0.66
LDLR-212ENST00000560467 ATP1B1P05026 303 aa10.95□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms