RNA–Protein interactions for RNA: ENST00000560173.1

LDLR-211, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 389 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-211ENST00000560173 ZBED6CLQ96FA7 236 aaPredicted RBP8.63□□□□□ -1.03
LDLR-211ENST00000560173 VSTM2LQ96N03 204 aa8.63□□□□□ -1.03
LDLR-211ENST00000560173 BTBD9Q96Q07 612 aa8.63□□□□□ -1.03
LDLR-211ENST00000560173 RABEP2Q9H5N1 569 aa8.63□□□□□ -1.03
LDLR-211ENST00000560173 DEPPQ9NTK1 212 aa8.63□□□□□ -1.03
LDLR-211ENST00000560173 ACSS1Q9NUB1 689 aaPredicted RBP8.63□□□□□ -1.03
LDLR-211ENST00000560173 NOP53Q9NZM5 478 aaKnown RBP8.63□□□□□ -1.03
LDLR-211ENST00000560173 PRODH2Q9UF12 536 aa8.63□□□□□ -1.03
LDLR-211ENST00000560173 C19orf53Q9UNZ5 99 aaPredicted RBP8.63□□□□□ -1.03
LDLR-211ENST00000560173 PINLYPA6NC86 204 aa8.62□□□□□ -1.03
LDLR-211ENST00000560173 ANKUB1A6NFN9 424 aa8.62□□□□□ -1.03
LDLR-211ENST00000560173 FRG2CA6NGY1 282 aa8.62□□□□□ -1.03
LDLR-211ENST00000560173 TRPC5OSA6NMA1 111 aa8.62□□□□□ -1.03
LDLR-211ENST00000560173 SLCO1B7G3V0H7 640 aa8.62□□□□□ -1.03
LDLR-211ENST00000560173 UPK1AO00322 258 aa8.62□□□□□ -1.03
LDLR-211ENST00000560173 TO15178 435 aa8.62□□□□□ -1.03
LDLR-211ENST00000560173 ACOX3O15254 700 aa8.62□□□□□ -1.03
LDLR-211ENST00000560173 COQ9O75208 318 aa8.62□□□□□ -1.03
LDLR-211ENST00000560173 NME6O75414 186 aaPredicted RBP8.62□□□□□ -1.03
LDLR-211ENST00000560173 ATP5HO75947 161 aa8.62□□□□□ -1.03
LDLR-211ENST00000560173 CCL3P10147 92 aa8.62□□□□□ -1.03
LDLR-211ENST00000560173 LAMP1P11279 417 aa8.62□□□□□ -1.03
LDLR-211ENST00000560173 ZNF24P17028 368 aa8.62□□□□□ -1.03
LDLR-211ENST00000560173 DDX5P17844 614 aaKnown RBP8.62□□□□□ -1.03
LDLR-211ENST00000560173 LBPP18428 481 aa8.62□□□□□ -1.03
LDLR-211ENST00000560173 PRPS1L1P21108 318 aa8.62□□□□□ -1.03
LDLR-211ENST00000560173 ABCD3P28288 659 aa8.62□□□□□ -1.03
LDLR-211ENST00000560173 PPICP45877 212 aa8.62□□□□□ -1.03
LDLR-211ENST00000560173 DIO3P55073 304 aa8.62□□□□□ -1.03
LDLR-211ENST00000560173 CLDN8P56748 225 aa8.62□□□□□ -1.03
LDLR-211ENST00000560173 NRG3P56975 720 aa8.62□□□□□ -1.03
LDLR-211ENST00000560173 GPR85P60893 370 aa8.62□□□□□ -1.03
LDLR-211ENST00000560173 DCAF7P61962 342 aa8.62□□□□□ -1.03
LDLR-211ENST00000560173 SRSF11Q05519 484 aaKnown RBP8.62□□□□□ -1.03
LDLR-211ENST00000560173 ZNF155Q12901 538 aaPredicted RBP8.62□□□□□ -1.03
LDLR-211ENST00000560173 HSPB3Q12988 150 aa8.62□□□□□ -1.03
LDLR-211ENST00000560173 RPS6KA2Q15349 733 aa8.62□□□□□ -1.03
LDLR-211ENST00000560173 NTRK2Q16620 822 aa8.62□□□□□ -1.03
LDLR-211ENST00000560173 RNFT1Q5M7Z0 435 aa8.62□□□□□ -1.03
LDLR-211ENST00000560173 CPTPQ5TA50 214 aa8.62□□□□□ -1.03
LDLR-211ENST00000560173 OGFOD2Q6N063 350 aa8.62□□□□□ -1.03
LDLR-211ENST00000560173 NPSR1Q6W5P4 371 aa8.62□□□□□ -1.03
LDLR-211ENST00000560173 FAM47EQ6ZV65 393 aa8.62□□□□□ -1.03
LDLR-211ENST00000560173 LARP4Q71RC2 724 aaKnown RBP eCLIP8.62□□□□□ -1.03
LDLR-211ENST00000560173 TRPM8Q7Z2W7 1104 aa8.62□□□□□ -1.03
LDLR-211ENST00000560173 MAVSQ7Z434 540 aa8.62□□□□□ -1.03
LDLR-211ENST00000560173 SIAH3Q8IW03 269 aa8.62□□□□□ -1.03
LDLR-211ENST00000560173 WDR75Q8IWA0 830 aaKnown RBP8.62□□□□□ -1.03
LDLR-211ENST00000560173 FBXW8Q8N3Y1 598 aa8.62□□□□□ -1.03
LDLR-211ENST00000560173 ZFP62Q8NB50 900 aaPredicted RBP8.62□□□□□ -1.03
LDLR-211ENST00000560173 OR7A2PQ8NGA2 310 aa8.62□□□□□ -1.03
LDLR-211ENST00000560173 OR10G3Q8NGC4 313 aa8.62□□□□□ -1.03
LDLR-211ENST00000560173 ZFP28Q8NHY6 868 aa8.62□□□□□ -1.03
LDLR-211ENST00000560173 PAQR8Q8TEZ7 354 aa8.62□□□□□ -1.03
LDLR-211ENST00000560173 NUDT8Q8WV74 236 aa8.62□□□□□ -1.03
LDLR-211ENST00000560173 ELP4Q96EB1 424 aa8.62□□□□□ -1.03
LDLR-211ENST00000560173 HSPBAP1Q96EW2 488 aa8.62□□□□□ -1.03
LDLR-211ENST00000560173 LCORQ96JN0 433 aaPredicted RBP8.62□□□□□ -1.03
LDLR-211ENST00000560173 FOLH1BQ9HBA9 442 aa8.62□□□□□ -1.03
LDLR-211ENST00000560173 SACM1LQ9NTJ5 587 aa8.62□□□□□ -1.03
LDLR-211ENST00000560173 DDX18Q9NVP1 670 aaKnown RBP8.62□□□□□ -1.03
LDLR-211ENST00000560173 SH3BP4Q9P0V3 963 aa8.62□□□□□ -1.03
LDLR-211ENST00000560173 GPR55Q9Y2T6 319 aaPredicted RBP8.62□□□□□ -1.03
LDLR-211ENST00000560173 NPFFR2Q9Y5X5 522 aa8.62□□□□□ -1.03
LDLR-211ENST00000560173 CHCHD2Q9Y6H1 151 aaPredicted RBP8.62□□□□□ -1.03
LDLR-211ENST00000560173 ZGRF1Q86YA3 2104 aa8.62□□□□□ -1.03
LDLR-211ENST00000560173 GOLGA8QA0A0J9YX86 632 aa8.61□□□□□ -1.03
LDLR-211ENST00000560173 CLEC18AA5D8T8 446 aa8.61□□□□□ -1.03
LDLR-211ENST00000560173 GOLGA8OA6NCC3 632 aa8.61□□□□□ -1.03
LDLR-211ENST00000560173 GOLGA8NF8WBI6 632 aa8.61□□□□□ -1.03
LDLR-211ENST00000560173 G3V3Y1 287 aa8.61□□□□□ -1.03
LDLR-211ENST00000560173 KLRC4-KLRK1H3BQV0 150 aa8.61□□□□□ -1.03
LDLR-211ENST00000560173 ZNF195O14628 629 aa8.61□□□□□ -1.03
LDLR-211ENST00000560173 ANKRD28O15084 1053 aa8.61□□□□□ -1.03
LDLR-211ENST00000560173 HNRNPCL1O60812 293 aaKnown RBP8.61□□□□□ -1.03
LDLR-211ENST00000560173 ERN1O75460 977 aaKnown RBP8.61□□□□□ -1.03
LDLR-211ENST00000560173 PPM1BO75688 479 aa8.61□□□□□ -1.03
LDLR-211ENST00000560173 WISP2O76076 250 aa8.61□□□□□ -1.03
LDLR-211ENST00000560173 ALDOCP09972 364 aaKnown RBP8.61□□□□□ -1.03
LDLR-211ENST00000560173 CT45A8P0DMV1 189 aa8.61□□□□□ -1.03
LDLR-211ENST00000560173 CT45A9P0DMV2 189 aa8.61□□□□□ -1.03
LDLR-211ENST00000560173 KITP10721 976 aa8.61□□□□□ -1.03
LDLR-211ENST00000560173 NAGAP17050 411 aa8.61□□□□□ -1.03
LDLR-211ENST00000560173 EFNA1P20827 205 aaPredicted RBP8.61□□□□□ -1.03
LDLR-211ENST00000560173 DRD5P21918 477 aa8.61□□□□□ -1.03
LDLR-211ENST00000560173 EPHA3P29320 983 aa8.61□□□□□ -1.03
LDLR-211ENST00000560173 RFC3P40938 356 aa8.61□□□□□ -1.03
LDLR-211ENST00000560173 TMED10P49755 219 aaKnown RBP8.61□□□□□ -1.03
LDLR-211ENST00000560173 CDK9P50750 372 aaKnown RBP8.61□□□□□ -1.03
LDLR-211ENST00000560173 MANFP55145 182 aaKnown RBP8.61□□□□□ -1.03
LDLR-211ENST00000560173 CORO7P57737 925 aa8.61□□□□□ -1.03
LDLR-211ENST00000560173 FBXW4P57775 412 aa8.61□□□□□ -1.03
LDLR-211ENST00000560173 ALDH6A1Q02252 535 aaKnown RBP8.61□□□□□ -1.03
LDLR-211ENST00000560173 PLCXD2Q0VAA5 305 aa8.61□□□□□ -1.03
LDLR-211ENST00000560173 MLC1Q15049 377 aa8.61□□□□□ -1.03
LDLR-211ENST00000560173 CT45A2Q5DJT8 189 aa8.61□□□□□ -1.03
LDLR-211ENST00000560173 CLEC18BQ6UXF7 455 aa8.61□□□□□ -1.03
LDLR-211ENST00000560173 CAMKMTQ7Z624 323 aa8.61□□□□□ -1.03
LDLR-211ENST00000560173 PRR22Q8IZ63 422 aa8.61□□□□□ -1.03
LDLR-211ENST00000560173 SLC34A3Q8N130 599 aa8.61□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 50.2 ms