RNA–Protein interactions for RNA: ENST00000559340.1

LDLR-210, Transcript of low density lipoprotein receptor, humanhuman

TSL 5

Gene LDLR, Length 605 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-210ENST00000559340 TRMT5Q32P41 509 aaKnown RBP8.56□□□□□ -1.04
LDLR-210ENST00000559340 CYP27C1Q4G0S4 372 aa8.56□□□□□ -1.04
LDLR-210ENST00000559340 PIGGQ5H8A4 983 aa8.56□□□□□ -1.04
LDLR-210ENST00000559340 ACER2Q5QJU3 275 aa8.56□□□□□ -1.04
LDLR-210ENST00000559340 LRIF1Q5T3J3 769 aa8.56□□□□□ -1.04
LDLR-210ENST00000559340 ATAD3BQ5T9A4 648 aa8.56□□□□□ -1.04
LDLR-210ENST00000559340 CDC73Q6P1J9 531 aa8.56□□□□□ -1.04
LDLR-210ENST00000559340 SLC2A7Q6PXP3 512 aa8.56□□□□□ -1.04
LDLR-210ENST00000559340 ANGPTL8Q6UXH0 198 aa8.56□□□□□ -1.04
LDLR-210ENST00000559340 HACD2Q6Y1H2 254 aa8.56□□□□□ -1.04
LDLR-210ENST00000559340 TRPM8Q7Z2W7 1104 aa8.56□□□□□ -1.04
LDLR-210ENST00000559340 ARPINQ7Z6K5 226 aa8.56□□□□□ -1.04
LDLR-210ENST00000559340 DHDDSQ86SQ9 333 aa8.56□□□□□ -1.04
LDLR-210ENST00000559340 GPALPP1Q8IXQ4 340 aa8.56□□□□□ -1.04
LDLR-210ENST00000559340 ARMC10Q8N2F6 343 aa8.56□□□□□ -1.04
LDLR-210ENST00000559340 TMEM156Q8N614 296 aa8.56□□□□□ -1.04
LDLR-210ENST00000559340 BRIX1Q8TDN6 353 aaKnown RBP8.56□□□□□ -1.04
LDLR-210ENST00000559340 DOK4Q8TEW6 326 aa8.56□□□□□ -1.04
LDLR-210ENST00000559340 UBL7Q96S82 380 aaPredicted RBP8.56□□□□□ -1.04
LDLR-210ENST00000559340 STACQ99469 402 aa8.56□□□□□ -1.04
LDLR-210ENST00000559340 HOPXQ9BPY8 73 aaPredicted RBP8.56□□□□□ -1.04
LDLR-210ENST00000559340 INPP5KQ9BT40 448 aa8.56□□□□□ -1.04
LDLR-210ENST00000559340 LMF2Q9BU23 707 aaKnown RBP8.56□□□□□ -1.04
LDLR-210ENST00000559340 WWTR1Q9GZV5 400 aa8.56□□□□□ -1.04
LDLR-210ENST00000559340 PAIP1Q9H074 479 aaKnown RBP8.56□□□□□ -1.04
LDLR-210ENST00000559340 PRORYQ9H606 182 aa8.56□□□□□ -1.04
LDLR-210ENST00000559340 TPT1P8Q9HAU6 139 aa8.56□□□□□ -1.04
LDLR-210ENST00000559340 HHATLQ9HCP6 504 aa8.56□□□□□ -1.04
LDLR-210ENST00000559340 SLC52A3Q9NQ40 469 aa8.56□□□□□ -1.04
LDLR-210ENST00000559340 SERHLQ9NQF3 203 aa8.56□□□□□ -1.04
LDLR-210ENST00000559340 NIPSNAP3AQ9UFN0 247 aaPredicted RBP8.56□□□□□ -1.04
LDLR-210ENST00000559340 TUBD1Q9UJT1 453 aa8.56□□□□□ -1.04
LDLR-210ENST00000559340 GPR55Q9Y2T6 319 aaPredicted RBP8.56□□□□□ -1.04
LDLR-210ENST00000559340 OR10H1Q9Y4A9 318 aa8.56□□□□□ -1.04
LDLR-210ENST00000559340 PCDHB14Q9Y5E9 798 aa8.56□□□□□ -1.04
LDLR-210ENST00000559340 FRG2CA6NGY1 282 aa8.55□□□□□ -1.04
LDLR-210ENST00000559340 CCT8L1PA6NM43 557 aa8.55□□□□□ -1.04
LDLR-210ENST00000559340 HRKO00198 91 aa8.55□□□□□ -1.04
LDLR-210ENST00000559340 CLIC1O00299 241 aa8.55□□□□□ -1.04
LDLR-210ENST00000559340 TP53I11O14683 189 aa8.55□□□□□ -1.04
LDLR-210ENST00000559340 AIM2O14862 343 aa8.55□□□□□ -1.04
LDLR-210ENST00000559340 TO15178 435 aa8.55□□□□□ -1.04
LDLR-210ENST00000559340 ASNA1O43681 348 aa8.55□□□□□ -1.04
LDLR-210ENST00000559340 HS6ST1O60243 411 aa8.55□□□□□ -1.04
LDLR-210ENST00000559340 ATP5HO75947 161 aa8.55□□□□□ -1.04
LDLR-210ENST00000559340 PSMG1O95456 288 aa8.55□□□□□ -1.04
LDLR-210ENST00000559340 HMGN2P05204 90 aaKnown RBP8.55□□□□□ -1.04
LDLR-210ENST00000559340 GSNP06396 782 aa8.55□□□□□ -1.04
LDLR-210ENST00000559340 FREM3P0C091 2139 aa8.55□□□□□ -1.04
LDLR-210ENST00000559340 CALB2P22676 271 aa8.55□□□□□ -1.04
LDLR-210ENST00000559340 LCN1P31025 176 aa8.55□□□□□ -1.04
LDLR-210ENST00000559340 GABRA3P34903 492 aa8.55□□□□□ -1.04
LDLR-210ENST00000559340 PTGER1P34995 402 aa8.55□□□□□ -1.04
LDLR-210ENST00000559340 KHKP50053 298 aa8.55□□□□□ -1.04
LDLR-210ENST00000559340 MXRA7P84157 204 aa8.55□□□□□ -1.04
LDLR-210ENST00000559340 FADDQ13158 208 aa8.55□□□□□ -1.04
LDLR-210ENST00000559340 MFAP5Q13361 173 aa8.55□□□□□ -1.04
LDLR-210ENST00000559340 LASP1Q14847 261 aaKnown RBP8.55□□□□□ -1.04
LDLR-210ENST00000559340 DECR1Q16698 335 aa8.55□□□□□ -1.04
LDLR-210ENST00000559340 PAGE3Q5JUK9 113 aa8.55□□□□□ -1.04
LDLR-210ENST00000559340 SAXO2Q658L1 398 aa8.55□□□□□ -1.04
LDLR-210ENST00000559340 REP15Q6BDI9 236 aa8.55□□□□□ -1.04
LDLR-210ENST00000559340 TCTN3Q6NUS6 607 aa8.55□□□□□ -1.04
LDLR-210ENST00000559340 MFSD12Q6NUT3 480 aa8.55□□□□□ -1.04
LDLR-210ENST00000559340 TREML1Q86YW5 311 aa8.55□□□□□ -1.04
LDLR-210ENST00000559340 SLC44A2Q8IWA5 706 aaPredicted RBP8.55□□□□□ -1.04
LDLR-210ENST00000559340 C9orf40Q8IXQ3 194 aa8.55□□□□□ -1.04
LDLR-210ENST00000559340 SLC34A3Q8N130 599 aa8.55□□□□□ -1.04
LDLR-210ENST00000559340 KIF2BQ8N4N8 673 aa8.55□□□□□ -1.04
LDLR-210ENST00000559340 ZADH2Q8N4Q0 377 aa8.55□□□□□ -1.04
LDLR-210ENST00000559340 FITM2Q8N6M3 262 aa8.55□□□□□ -1.04
LDLR-210ENST00000559340 SIRT6Q8N6T7 355 aa8.55□□□□□ -1.04
LDLR-210ENST00000559340 POU5F2Q8N7G0 328 aa8.55□□□□□ -1.04
LDLR-210ENST00000559340 ZNF321PQ8N8H1 164 aa8.55□□□□□ -1.04
LDLR-210ENST00000559340 COX18Q8N8Q8 333 aa8.55□□□□□ -1.04
LDLR-210ENST00000559340 OR52N2Q8NGI0 321 aa8.55□□□□□ -1.04
LDLR-210ENST00000559340 MIPOL1Q8TD10 442 aa8.55□□□□□ -1.04
LDLR-210ENST00000559340 GPR151Q8TDV0 419 aa8.55□□□□□ -1.04
LDLR-210ENST00000559340 ZFP90Q8TF47 636 aa8.55□□□□□ -1.04
LDLR-210ENST00000559340 THAP3Q8WTV1 239 aaPredicted RBP8.55□□□□□ -1.04
LDLR-210ENST00000559340 ASB15Q8WXK1 588 aa8.55□□□□□ -1.04
LDLR-210ENST00000559340 PSMF1Q92530 271 aa8.55□□□□□ -1.04
LDLR-210ENST00000559340 SLC9A6Q92581 669 aa8.55□□□□□ -1.04
LDLR-210ENST00000559340 JADE3Q92613 823 aa8.55□□□□□ -1.04
LDLR-210ENST00000559340 ADIPOR1Q96A54 375 aa8.55□□□□□ -1.04
LDLR-210ENST00000559340 LRRC58Q96CX6 371 aa8.55□□□□□ -1.04
LDLR-210ENST00000559340 VSTM2LQ96N03 204 aa8.55□□□□□ -1.04
LDLR-210ENST00000559340 BBC3Q96PG8 261 aaPredicted RBP8.55□□□□□ -1.04
LDLR-210ENST00000559340 BTBD9Q96Q07 612 aa8.55□□□□□ -1.04
LDLR-210ENST00000559340 CGREF1Q99674 301 aa8.55□□□□□ -1.04
LDLR-210ENST00000559340 MESP1Q9BRJ9 268 aa8.55□□□□□ -1.04
LDLR-210ENST00000559340 UTP23Q9BRU9 249 aaKnown RBP8.55□□□□□ -1.04
LDLR-210ENST00000559340 RNF32Q9H0A6 362 aa8.55□□□□□ -1.04
LDLR-210ENST00000559340 PIGUQ9H490 435 aa8.55□□□□□ -1.04
LDLR-210ENST00000559340 EQTNQ9NQ60 294 aa8.55□□□□□ -1.04
LDLR-210ENST00000559340 DUSP22Q9NRW4 184 aa8.55□□□□□ -1.04
LDLR-210ENST00000559340 ZNF223Q9UK11 482 aaPredicted RBP8.55□□□□□ -1.04
LDLR-210ENST00000559340 LIPT1Q9Y234 373 aa8.55□□□□□ -1.04
LDLR-210ENST00000559340 GMEB1Q9Y692 573 aa8.55□□□□□ -1.04
LDLR-210ENST00000559340 PCSK5Q92824 1860 aa8.55□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms