RNA–Protein interactions for RNA: ENST00000558925.1

USP3-209, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 501 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-209ENST00000558925 C1orf189Q5VU69 101 aa1.34□□□□□ -2.19
USP3-209ENST00000558925 FAM219BQ5XKK7 198 aa1.34□□□□□ -2.19
USP3-209ENST00000558925 NCR3LG1Q68D85 454 aa1.34□□□□□ -2.19
USP3-209ENST00000558925 DMKNQ6E0U4 476 aaPredicted RBP1.34□□□□□ -2.19
USP3-209ENST00000558925 RHBDD2Q6NTF9 364 aa1.34□□□□□ -2.19
USP3-209ENST00000558925 CBLN3Q6UW01 205 aa1.34□□□□□ -2.19
USP3-209ENST00000558925 HACD2Q6Y1H2 254 aa1.34□□□□□ -2.19
USP3-209ENST00000558925 ZNF497Q6ZNH5 498 aa1.34□□□□□ -2.19
USP3-209ENST00000558925 PAQR9Q6ZVX9 377 aa1.34□□□□□ -2.19
USP3-209ENST00000558925 KRTAP5-5Q701N2 237 aaPredicted RBP1.34□□□□□ -2.19
USP3-209ENST00000558925 Q7L0L9 218 aa1.34□□□□□ -2.19
USP3-209ENST00000558925 LPCAT2Q7L5N7 544 aa1.34□□□□□ -2.19
USP3-209ENST00000558925 FAM131BQ86XD5 332 aa1.34□□□□□ -2.19
USP3-209ENST00000558925 CENPLQ8N0S6 344 aaPredicted RBP1.34□□□□□ -2.19
USP3-209ENST00000558925 METTL4Q8N3J2 472 aa1.34□□□□□ -2.19
USP3-209ENST00000558925 SPEM1Q8N4L4 309 aa1.34□□□□□ -2.19
USP3-209ENST00000558925 ZNF781Q8N8C0 355 aa1.34□□□□□ -2.19
USP3-209ENST00000558925 STKLD1Q8NE28 680 aa1.34□□□□□ -2.19
USP3-209ENST00000558925 NFAM1Q8NET5 270 aaPredicted RBP1.34□□□□□ -2.19
USP3-209ENST00000558925 PRSS33Q8NF86 280 aa1.34□□□□□ -2.19
USP3-209ENST00000558925 OR2T3Q8NH03 318 aa1.34□□□□□ -2.19
USP3-209ENST00000558925 OR4Q3Q8NH05 313 aa1.34□□□□□ -2.19
USP3-209ENST00000558925 OR52J3Q8NH60 311 aa1.34□□□□□ -2.19
USP3-209ENST00000558925 ZNF671Q8TAW3 534 aa1.34□□□□□ -2.19
USP3-209ENST00000558925 FBXO25Q8TCJ0 367 aa1.34□□□□□ -2.19
USP3-209ENST00000558925 PCNPQ8WW12 178 aaKnown RBP1.34□□□□□ -2.19
USP3-209ENST00000558925 HPDLQ96IR7 371 aa1.34□□□□□ -2.19
USP3-209ENST00000558925 ZNF597Q96LX8 424 aa1.34□□□□□ -2.19
USP3-209ENST00000558925 VSTM2LQ96N03 204 aa1.34□□□□□ -2.19
USP3-209ENST00000558925 TTC25Q96NG3 672 aa1.34□□□□□ -2.19
USP3-209ENST00000558925 ANKRD27Q96NW4 1050 aa1.34□□□□□ -2.19
USP3-209ENST00000558925 CASD1Q96PB1 797 aa1.34□□□□□ -2.19
USP3-209ENST00000558925 VPS35Q96QK1 796 aa1.34□□□□□ -2.19
USP3-209ENST00000558925 CPXM1Q96SM3 734 aa1.34□□□□□ -2.19
USP3-209ENST00000558925 LGMNQ99538 433 aa1.34□□□□□ -2.19
USP3-209ENST00000558925 TTYH2Q9BSA4 534 aa1.34□□□□□ -2.19
USP3-209ENST00000558925 EDEM2Q9BV94 578 aa1.34□□□□□ -2.19
USP3-209ENST00000558925 TPPP3Q9BW30 176 aa1.34□□□□□ -2.19
USP3-209ENST00000558925 RAB11FIP5Q9BXF6 653 aa1.34□□□□□ -2.19
USP3-209ENST00000558925 GSDMCQ9BYG8 508 aa1.34□□□□□ -2.19
USP3-209ENST00000558925 OCR1Q9BZK8 76 aa1.34□□□□□ -2.19
USP3-209ENST00000558925 TSPY26PQ9H489 355 aa1.34□□□□□ -2.19
USP3-209ENST00000558925 RHOJQ9H4E5 214 aa1.34□□□□□ -2.19
USP3-209ENST00000558925 MOB1AQ9H8S9 216 aa1.34□□□□□ -2.19
USP3-209ENST00000558925 RAB18Q9NP72 206 aa1.34□□□□□ -2.19
USP3-209ENST00000558925 ESM1Q9NQ30 184 aa1.34□□□□□ -2.19
USP3-209ENST00000558925 DCAF13Q9NV06 445 aaKnown RBP1.34□□□□□ -2.19
USP3-209ENST00000558925 RBM28Q9NW13 759 aaKnown RBP1.34□□□□□ -2.19
USP3-209ENST00000558925 NDE1Q9NXR1 346 aa1.34□□□□□ -2.19
USP3-209ENST00000558925 UTP6Q9NYH9 597 aaKnown RBP1.34□□□□□ -2.19
USP3-209ENST00000558925 THYN1Q9P016 225 aa1.34□□□□□ -2.19
USP3-209ENST00000558925 ATP6V1HQ9UI12 483 aa1.34□□□□□ -2.19
USP3-209ENST00000558925 PURGQ9UJV8 347 aaKnown RBP1.34□□□□□ -2.19
USP3-209ENST00000558925 SF3B1O75533 1304 aaKnown RBP eCLIP1.34□□□□□ -2.2
USP3-209ENST00000558925 PCNX3Q9H6A9 2034 aa1.33□□□□□ -2.2
USP3-209ENST00000558925 IGLV4-3A0A075B6K6 122 aa1.33□□□□□ -2.2
USP3-209ENST00000558925 ESYT2A0FGR8 921 aa1.33□□□□□ -2.2
USP3-209ENST00000558925 RPL37AP8A6NKH3 93 aa1.33□□□□□ -2.2
USP3-209ENST00000558925 FAM74A7A6NL05 159 aa1.33□□□□□ -2.2
USP3-209ENST00000558925 EPM2AB3EWF7 344 aa1.33□□□□□ -2.2
USP3-209ENST00000558925 SHISA9B4DS77 424 aa1.33□□□□□ -2.2
USP3-209ENST00000558925 NPIPA2E9PIF3 369 aa1.33□□□□□ -2.2
USP3-209ENST00000558925 H0YCG3 227 aa1.33□□□□□ -2.2
USP3-209ENST00000558925 E2F3O00716 465 aa1.33□□□□□ -2.2
USP3-209ENST00000558925 CASKO14936 926 aa1.33□□□□□ -2.2
USP3-209ENST00000558925 TFECO14948 347 aaPredicted RBP1.33□□□□□ -2.2
USP3-209ENST00000558925 MAPK13O15264 365 aa1.33□□□□□ -2.2
USP3-209ENST00000558925 ALOX15BO15296 676 aa1.33□□□□□ -2.2
USP3-209ENST00000558925 PDE5AO76074 875 aa1.33□□□□□ -2.2
USP3-209ENST00000558925 UFL1O94874 794 aa1.33□□□□□ -2.2
USP3-209ENST00000558925 VENTXO95231 258 aa1.33□□□□□ -2.2
USP3-209ENST00000558925 POP4O95707 220 aaKnown RBP1.33□□□□□ -2.2
USP3-209ENST00000558925 ECDO95905 644 aaPredicted RBP1.33□□□□□ -2.2
USP3-209ENST00000558925 IGSF6O95976 241 aa1.33□□□□□ -2.2
USP3-209ENST00000558925 CGAP01215 116 aa1.33□□□□□ -2.2
USP3-209ENST00000558925 IGHG1P01857 330 aa1.33□□□□□ -2.2
USP3-209ENST00000558925 CHRNA1P02708 482 aa1.33□□□□□ -2.2
USP3-209ENST00000558925 UGT2B4P06133 528 aa1.33□□□□□ -2.2
USP3-209ENST00000558925 FCGR3AP08637 254 aa1.33□□□□□ -2.2
USP3-209ENST00000558925 THRBP10828 461 aa1.33□□□□□ -2.2
USP3-209ENST00000558925 ANXA3P12429 323 aa1.33□□□□□ -2.2
USP3-209ENST00000558925 PRG2P13727 222 aa1.33□□□□□ -2.2
USP3-209ENST00000558925 CPN1P15169 458 aa1.33□□□□□ -2.2
USP3-209ENST00000558925 ATP6V1C1P21283 382 aa1.33□□□□□ -2.2
USP3-209ENST00000558925 PCMT1P22061 227 aa1.33□□□□□ -2.2
USP3-209ENST00000558925 IDSP22304 550 aa1.33□□□□□ -2.2
USP3-209ENST00000558925 UGT1A4P22310 534 aa1.33□□□□□ -2.2
USP3-209ENST00000558925 UQCRC2P22695 453 aa1.33□□□□□ -2.2
USP3-209ENST00000558925 PSMA5P28066 241 aa1.33□□□□□ -2.2
USP3-209ENST00000558925 RPL9P32969 192 aaKnown RBP1.33□□□□□ -2.2
USP3-209ENST00000558925 VCPP55072 806 aaKnown RBP1.33□□□□□ -2.2
USP3-209ENST00000558925 ACTR1AP61163 376 aa1.33□□□□□ -2.2
USP3-209ENST00000558925 ERVK-16P61578 105 aa1.33□□□□□ -2.2
USP3-209ENST00000558925 NOP14P78316 857 aaKnown RBP1.33□□□□□ -2.2
USP3-209ENST00000558925 SRPXP78539 464 aa1.33□□□□□ -2.2
USP3-209ENST00000558925 MRPS6P82932 125 aaKnown RBP1.33□□□□□ -2.2
USP3-209ENST00000558925 CDKL1Q00532 357 aa1.33□□□□□ -2.2
USP3-209ENST00000558925 ZNF33BQ06732 778 aa1.33□□□□□ -2.2
USP3-209ENST00000558925 PJVKQ0ZLH3 352 aa1.33□□□□□ -2.2
USP3-209ENST00000558925 LY6DQ14210 128 aa1.33□□□□□ -2.2
Retrieved 100 of 20,778 RNA–protein pairs in 63.2 ms