RNA–Protein interactions for RNA: ENST00000557427.5

SHMT2-230, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 569 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-230ENST00000557427 HBEGFQ99075 208 aa11.62□□□□□ -0.55
SHMT2-230ENST00000557427 ECSITQ9BQ95 431 aa11.62□□□□□ -0.55
SHMT2-230ENST00000557427 SLC39A3Q9BRY0 314 aa11.62□□□□□ -0.55
SHMT2-230ENST00000557427 POLDIP3Q9BY77 421 aaKnown RBP11.62□□□□□ -0.55
SHMT2-230ENST00000557427 RBCK1Q9BYM8 510 aa11.62□□□□□ -0.55
SHMT2-230ENST00000557427 ACPTQ9BZG2 426 aa11.62□□□□□ -0.55
SHMT2-230ENST00000557427 TRIM15Q9C019 465 aa11.62□□□□□ -0.55
SHMT2-230ENST00000557427 VN1R1Q9GZP7 353 aa11.62□□□□□ -0.55
SHMT2-230ENST00000557427 ELOVL6Q9H5J4 265 aa11.62□□□□□ -0.55
SHMT2-230ENST00000557427 PRM3Q9NNZ6 103 aa11.62□□□□□ -0.55
SHMT2-230ENST00000557427 FARSBQ9NSD9 589 aaKnown RBP11.62□□□□□ -0.55
SHMT2-230ENST00000557427 CMTM6Q9NX76 183 aa11.62□□□□□ -0.55
SHMT2-230ENST00000557427 GPRC5BQ9NZH0 403 aa11.62□□□□□ -0.55
SHMT2-230ENST00000557427 LRFN1Q9P244 771 aa11.62□□□□□ -0.55
SHMT2-230ENST00000557427 RNF6Q9Y252 685 aa11.62□□□□□ -0.55
SHMT2-230ENST00000557427 TMED5Q9Y3A6 229 aa11.62□□□□□ -0.55
SHMT2-230ENST00000557427 AQP12BA6NM10 295 aa11.61□□□□□ -0.55
SHMT2-230ENST00000557427 C9JVG2 144 aa11.61□□□□□ -0.55
SHMT2-230ENST00000557427 CLGNO14967 610 aa11.61□□□□□ -0.55
SHMT2-230ENST00000557427 CHST10O43529 356 aa11.61□□□□□ -0.55
SHMT2-230ENST00000557427 PRAMEF4O60810 478 aa11.61□□□□□ -0.55
SHMT2-230ENST00000557427 DNAJA2O60884 412 aa11.61□□□□□ -0.55
SHMT2-230ENST00000557427 B4GALT2O60909 372 aa11.61□□□□□ -0.55
SHMT2-230ENST00000557427 C8orf89P0DMQ9 161 aa11.61□□□□□ -0.55
SHMT2-230ENST00000557427 HSD3B1P14060 373 aa11.61□□□□□ -0.55
SHMT2-230ENST00000557427 TCN1P20061 433 aaPredicted RBP11.61□□□□□ -0.55
SHMT2-230ENST00000557427 DNASE1P24855 282 aa11.61□□□□□ -0.55
SHMT2-230ENST00000557427 HSD3B2P26439 372 aa11.61□□□□□ -0.55
SHMT2-230ENST00000557427 MSX2P35548 267 aaPredicted RBP11.61□□□□□ -0.55
SHMT2-230ENST00000557427 AHRP35869 848 aa11.61□□□□□ -0.55
SHMT2-230ENST00000557427 CASP2P42575 452 aa11.61□□□□□ -0.55
SHMT2-230ENST00000557427 GTF2A1P52655 376 aaPredicted RBP11.61□□□□□ -0.55
SHMT2-230ENST00000557427 REEP5Q00765 189 aa11.61□□□□□ -0.55
SHMT2-230ENST00000557427 HMGCS1Q01581 520 aa11.61□□□□□ -0.55
SHMT2-230ENST00000557427 IRF8Q02556 426 aa11.61□□□□□ -0.55
SHMT2-230ENST00000557427 CSTF3Q12996 717 aaKnown RBP11.61□□□□□ -0.55
SHMT2-230ENST00000557427 CHIT1Q13231 466 aa11.61□□□□□ -0.55
SHMT2-230ENST00000557427 TIGD2Q4W5G0 525 aa11.61□□□□□ -0.55
SHMT2-230ENST00000557427 SGO1Q5FBB7 561 aa11.61□□□□□ -0.55
SHMT2-230ENST00000557427 PAGE3Q5JUK9 113 aa11.61□□□□□ -0.55
SHMT2-230ENST00000557427 RNFT1Q5M7Z0 435 aa11.61□□□□□ -0.55
SHMT2-230ENST00000557427 OGFRL1Q5TC84 451 aaPredicted RBP11.61□□□□□ -0.55
SHMT2-230ENST00000557427 PRAMEF9Q5VWM5 478 aa11.61□□□□□ -0.55
SHMT2-230ENST00000557427 FRG2Q64ET8 278 aa11.61□□□□□ -0.55
SHMT2-230ENST00000557427 GRHL2Q6ISB3 625 aa11.61□□□□□ -0.55
SHMT2-230ENST00000557427 LCN8Q6JVE9 175 aa11.61□□□□□ -0.55
SHMT2-230ENST00000557427 TMEM205Q6UW68 189 aa11.61□□□□□ -0.55
SHMT2-230ENST00000557427 LANCL3Q6ZV70 420 aa11.61□□□□□ -0.55
SHMT2-230ENST00000557427 SPATA24Q86W54 205 aa11.61□□□□□ -0.55
SHMT2-230ENST00000557427 DHFR2Q86XF0 187 aa11.61□□□□□ -0.55
SHMT2-230ENST00000557427 AQP12AQ8IXF9 295 aa11.61□□□□□ -0.55
SHMT2-230ENST00000557427 LIX1Q8N485 282 aa11.61□□□□□ -0.55
SHMT2-230ENST00000557427 MDS2Q8NDY4 140 aa11.61□□□□□ -0.55
SHMT2-230ENST00000557427 TRPV3Q8NET8 790 aa11.61□□□□□ -0.55
SHMT2-230ENST00000557427 NT5CQ8TCD5 201 aa11.61□□□□□ -0.55
SHMT2-230ENST00000557427 UTP15Q8TED0 518 aaKnown RBP11.61□□□□□ -0.55
SHMT2-230ENST00000557427 VPS33AQ96AX1 596 aa11.61□□□□□ -0.55
SHMT2-230ENST00000557427 MBD6Q96DN6 1003 aa11.61□□□□□ -0.55
SHMT2-230ENST00000557427 METTL2AQ96IZ6 378 aaKnown RBP11.61□□□□□ -0.55
SHMT2-230ENST00000557427 FCRL1Q96LA6 429 aa11.61□□□□□ -0.55
SHMT2-230ENST00000557427 FRG2BQ96QU4 278 aa11.61□□□□□ -0.55
SHMT2-230ENST00000557427 SARGQ9BW04 601 aa11.61□□□□□ -0.55
SHMT2-230ENST00000557427 DPY30Q9C005 99 aa11.61□□□□□ -0.55
SHMT2-230ENST00000557427 KLHL4Q9C0H6 718 aa11.61□□□□□ -0.55
SHMT2-230ENST00000557427 PCDHAC1Q9H158 963 aa11.61□□□□□ -0.55
SHMT2-230ENST00000557427 RHBGQ9H310 441 aa11.61□□□□□ -0.55
SHMT2-230ENST00000557427 KLHL1Q9NR64 748 aa11.61□□□□□ -0.55
SHMT2-230ENST00000557427 RIMS3Q9UJD0 308 aa11.61□□□□□ -0.55
SHMT2-230ENST00000557427 A0A0G2JN53 185 aa11.6□□□□□ -0.55
SHMT2-230ENST00000557427 H0YIV9 168 aa11.6□□□□□ -0.55
SHMT2-230ENST00000557427 GALR3O60755 368 aaPredicted RBP11.6□□□□□ -0.55
SHMT2-230ENST00000557427 SEC24DO94855 1032 aaPredicted RBP11.6□□□□□ -0.55
SHMT2-230ENST00000557427 IL6P05231 212 aa11.6□□□□□ -0.55
SHMT2-230ENST00000557427 PCSK6P29122 969 aa11.6□□□□□ -0.55
SHMT2-230ENST00000557427 SLC7A1P30825 629 aa11.6□□□□□ -0.55
SHMT2-230ENST00000557427 HOXC12P31275 282 aa11.6□□□□□ -0.55
SHMT2-230ENST00000557427 CLNS1AP54105 237 aaKnown RBP11.6□□□□□ -0.55
SHMT2-230ENST00000557427 DLX5P56178 289 aa11.6□□□□□ -0.55
SHMT2-230ENST00000557427 CLDN8P56748 225 aa11.6□□□□□ -0.55
SHMT2-230ENST00000557427 BTN3A2P78410 334 aa11.6□□□□□ -0.55
SHMT2-230ENST00000557427 CAPRIN1Q14444 709 aaKnown RBP11.6□□□□□ -0.55
SHMT2-230ENST00000557427 SLBPQ14493 270 aaKnown RBP eCLIP11.6□□□□□ -0.55
SHMT2-230ENST00000557427 TRIP10Q15642 601 aa11.6□□□□□ -0.55
SHMT2-230ENST00000557427 NSDHLQ15738 373 aa11.6□□□□□ -0.55
SHMT2-230ENST00000557427 FXNQ16595 210 aa11.6□□□□□ -0.55
SHMT2-230ENST00000557427 XKR6Q5GH73 641 aa11.6□□□□□ -0.55
SHMT2-230ENST00000557427 TOR1AIP1Q5JTV8 583 aa11.6□□□□□ -0.55
SHMT2-230ENST00000557427 ABHD17BQ5VST6 288 aa11.6□□□□□ -0.55
SHMT2-230ENST00000557427 IZUMO2Q6UXV1 221 aa11.6□□□□□ -0.55
SHMT2-230ENST00000557427 TMIGD1Q6UXZ0 262 aa11.6□□□□□ -0.55
SHMT2-230ENST00000557427 ABHD13Q7L211 337 aa11.6□□□□□ -0.55
SHMT2-230ENST00000557427 CPEB2Q7Z5Q1 589 aaKnown RBP11.6□□□□□ -0.55
SHMT2-230ENST00000557427 GHDCQ8N2G8 530 aa11.6□□□□□ -0.55
SHMT2-230ENST00000557427 RPRMLQ8N4K4 120 aa11.6□□□□□ -0.55
SHMT2-230ENST00000557427 ADCY4Q8NFM4 1077 aa11.6□□□□□ -0.55
SHMT2-230ENST00000557427 CREB3L4Q8TEY5 395 aa11.6□□□□□ -0.55
SHMT2-230ENST00000557427 SCMH1Q96GD3 660 aa11.6□□□□□ -0.55
SHMT2-230ENST00000557427 LRGUKQ96M69 825 aa11.6□□□□□ -0.55
SHMT2-230ENST00000557427 ZNF700Q9H0M5 742 aa11.6□□□□□ -0.55
SHMT2-230ENST00000557427 IL1RL2Q9HB29 575 aa11.6□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms