RNA–Protein interactions for RNA: ENST00000556534.1

SCFD1-221, Transcript of sec1 family domain containing 1, humanhuman

TSL 5

Gene SCFD1, Length 864 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-221ENST00000556534 TTC31Q49AM3 519 aaPredicted RBP3.28□□□□□ -1.88
SCFD1-221ENST00000556534 ZCCHC12Q6PEW1 402 aa3.28□□□□□ -1.88
SCFD1-221ENST00000556534 DLEU7Q6UYE1 221 aa3.28□□□□□ -1.88
SCFD1-221ENST00000556534 TOM1L2Q6ZVM7 507 aa3.28□□□□□ -1.88
SCFD1-221ENST00000556534 BNIPLQ7Z465 357 aa3.28□□□□□ -1.88
SCFD1-221ENST00000556534 MRPL43Q8N983 215 aaKnown RBP3.28□□□□□ -1.88
SCFD1-221ENST00000556534 OR52E1Q8NGJ3 308 aa3.28□□□□□ -1.88
SCFD1-221ENST00000556534 URGCPQ8TCY9 931 aa3.28□□□□□ -1.88
SCFD1-221ENST00000556534 SLC13A3Q8WWT9 602 aa3.28□□□□□ -1.88
SCFD1-221ENST00000556534 ABCG4Q9H172 646 aa3.28□□□□□ -1.88
SCFD1-221ENST00000556534 C1orf21Q9H246 121 aa3.28□□□□□ -1.88
SCFD1-221ENST00000556534 ESM1Q9NQ30 184 aa3.28□□□□□ -1.88
SCFD1-221ENST00000556534 ABCB10Q9NRK6 738 aa3.28□□□□□ -1.88
SCFD1-221ENST00000556534 VNN3Q9NY84 501 aa3.28□□□□□ -1.88
SCFD1-221ENST00000556534 HMG20BQ9P0W2 317 aa3.28□□□□□ -1.88
SCFD1-221ENST00000556534 ENTPD4Q9Y227 616 aa3.28□□□□□ -1.88
SCFD1-221ENST00000556534 PIN4Q9Y237 131 aaKnown RBP3.28□□□□□ -1.88
SCFD1-221ENST00000556534 TDRKHQ9Y2W6 561 aaKnown RBP3.28□□□□□ -1.88
SCFD1-221ENST00000556534 PTPRUQ92729 1446 aa3.27□□□□□ -1.89
SCFD1-221ENST00000556534 EFCAB7A8K855 629 aa3.27□□□□□ -1.89
SCFD1-221ENST00000556534 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP3.27□□□□□ -1.89
SCFD1-221ENST00000556534 RANBP6O60518 1105 aaKnown RBP3.27□□□□□ -1.89
SCFD1-221ENST00000556534 SYNGR4O95473 234 aa3.27□□□□□ -1.89
SCFD1-221ENST00000556534 ALPPP05187 535 aa3.27□□□□□ -1.89
SCFD1-221ENST00000556534 APRTP07741 180 aa3.27□□□□□ -1.89
SCFD1-221ENST00000556534 HIST1H2AGP0C0S8 130 aaPredicted RBP3.27□□□□□ -1.89
SCFD1-221ENST00000556534 SLC35E2P0CK97 266 aa3.27□□□□□ -1.89
SCFD1-221ENST00000556534 ALPPL2P10696 532 aa3.27□□□□□ -1.89
SCFD1-221ENST00000556534 ZNF19P17023 458 aa3.27□□□□□ -1.89
SCFD1-221ENST00000556534 CCNA2P20248 432 aa3.27□□□□□ -1.89
SCFD1-221ENST00000556534 AHCYP23526 432 aa3.27□□□□□ -1.89
SCFD1-221ENST00000556534 MARCKSP29966 332 aaPredicted RBP3.27□□□□□ -1.89
SCFD1-221ENST00000556534 HPDP32754 393 aaPredicted RBP3.27□□□□□ -1.89
SCFD1-221ENST00000556534 ARHGDIBP52566 201 aa3.27□□□□□ -1.89
SCFD1-221ENST00000556534 GFPT1Q06210 699 aaPredicted RBP3.27□□□□□ -1.89
SCFD1-221ENST00000556534 ETFRF1Q6IPR1 90 aa3.27□□□□□ -1.89
SCFD1-221ENST00000556534 HIST2H2ABQ8IUE6 130 aaPredicted RBP3.27□□□□□ -1.89
SCFD1-221ENST00000556534 PYROXD2Q8N2H3 581 aa3.27□□□□□ -1.89
SCFD1-221ENST00000556534 GPR137CQ8N3F9 429 aa3.27□□□□□ -1.89
SCFD1-221ENST00000556534 HDDC3Q8N4P3 179 aa3.27□□□□□ -1.89
SCFD1-221ENST00000556534 COLGALT1Q8NBJ5 622 aa3.27□□□□□ -1.89
SCFD1-221ENST00000556534 FNDC8Q8TC99 324 aa3.27□□□□□ -1.89
SCFD1-221ENST00000556534 HIST1H2ACQ93077 130 aa3.27□□□□□ -1.89
SCFD1-221ENST00000556534 LHX4Q969G2 390 aa3.27□□□□□ -1.89
SCFD1-221ENST00000556534 MRPL38Q96DV4 380 aaKnown RBP3.27□□□□□ -1.89
SCFD1-221ENST00000556534 RUFY1Q96T51 708 aa3.27□□□□□ -1.89
SCFD1-221ENST00000556534 NLNQ9BYT8 704 aa3.27□□□□□ -1.89
SCFD1-221ENST00000556534 ABCG8Q9H221 673 aa3.27□□□□□ -1.89
SCFD1-221ENST00000556534 TSPY26PQ9H489 355 aa3.27□□□□□ -1.89
SCFD1-221ENST00000556534 SYTL2Q9HCH5 934 aa3.27□□□□□ -1.89
SCFD1-221ENST00000556534 EPS15L1Q9UBC2 864 aa3.27□□□□□ -1.89
SCFD1-221ENST00000556534 MIOXQ9UGB7 285 aa3.27□□□□□ -1.89
SCFD1-221ENST00000556534 CELA1Q9UNI1 258 aa3.27□□□□□ -1.89
SCFD1-221ENST00000556534 ZNF175Q9Y473 711 aa3.27□□□□□ -1.89
SCFD1-221ENST00000556534 SYNJ2O15056 1496 aa3.27□□□□□ -1.89
SCFD1-221ENST00000556534 PRRC2AP48634 2157 aaKnown RBP3.27□□□□□ -1.89
SCFD1-221ENST00000556534 NPIPA5A0A0B4J1W7 369 aa3.26□□□□□ -1.89
SCFD1-221ENST00000556534 MACROD2A1Z1Q3 448 aa3.26□□□□□ -1.89
SCFD1-221ENST00000556534 NPIPA5E9PKD4 350 aa3.26□□□□□ -1.89
SCFD1-221ENST00000556534 HAT1O14929 419 aa3.26□□□□□ -1.89
SCFD1-221ENST00000556534 NME2P1O60361 137 aa3.26□□□□□ -1.89
SCFD1-221ENST00000556534 DUSP14O95147 198 aaKnown RBP3.26□□□□□ -1.89
SCFD1-221ENST00000556534 CT45A10P0DMU9 189 aa3.26□□□□□ -1.89
SCFD1-221ENST00000556534 ZNF18P17022 549 aa3.26□□□□□ -1.89
SCFD1-221ENST00000556534 IL10P22301 178 aa3.26□□□□□ -1.89
SCFD1-221ENST00000556534 ACP1P24666 158 aa3.26□□□□□ -1.89
SCFD1-221ENST00000556534 OR1D4P47884 311 aa3.26□□□□□ -1.89
SCFD1-221ENST00000556534 ATXN3P54252 364 aaPredicted RBP3.26□□□□□ -1.89
SCFD1-221ENST00000556534 ZKSCAN8Q15776 578 aaPredicted RBP3.26□□□□□ -1.89
SCFD1-221ENST00000556534 PAN3Q58A45 887 aaKnown RBP3.26□□□□□ -1.89
SCFD1-221ENST00000556534 TOR1AIP1Q5JTV8 583 aa3.26□□□□□ -1.89
SCFD1-221ENST00000556534 CWC27Q6UX04 472 aaKnown RBP3.26□□□□□ -1.89
SCFD1-221ENST00000556534 ISLR2Q6UXK2 745 aa3.26□□□□□ -1.89
SCFD1-221ENST00000556534 C2orf66Q6UXQ4 117 aa3.26□□□□□ -1.89
SCFD1-221ENST00000556534 CNNM3Q8NE01 707 aa3.26□□□□□ -1.89
SCFD1-221ENST00000556534 OR4F17Q8NGA8 305 aa3.26□□□□□ -1.89
SCFD1-221ENST00000556534 TAF4BQ92750 862 aa3.26□□□□□ -1.89
SCFD1-221ENST00000556534 TMEM45BQ96B21 275 aa3.26□□□□□ -1.89
SCFD1-221ENST00000556534 EEF2KMTQ96G04 330 aa3.26□□□□□ -1.89
SCFD1-221ENST00000556534 C9orf85Q96MD7 179 aa3.26□□□□□ -1.89
SCFD1-221ENST00000556534 ZNF560Q96MR9 790 aa3.26□□□□□ -1.89
SCFD1-221ENST00000556534 TSGA13Q96PP4 275 aa3.26□□□□□ -1.89
SCFD1-221ENST00000556534 OR4F4Q96R69 305 aa3.26□□□□□ -1.89
SCFD1-221ENST00000556534 LIN28AQ9H9Z2 209 aaKnown RBP3.26□□□□□ -1.89
SCFD1-221ENST00000556534 HPF1Q9NWY4 346 aa3.26□□□□□ -1.89
SCFD1-221ENST00000556534 SPASTQ9UBP0 616 aa3.26□□□□□ -1.89
SCFD1-221ENST00000556534 COPS7AQ9UBW8 275 aa3.26□□□□□ -1.89
SCFD1-221ENST00000556534 PURGQ9UJV8 347 aaKnown RBP3.26□□□□□ -1.89
SCFD1-221ENST00000556534 NTNG1Q9Y2I2 539 aa3.26□□□□□ -1.89
SCFD1-221ENST00000556534 STRAPQ9Y3F4 350 aaKnown RBP3.26□□□□□ -1.89
SCFD1-221ENST00000556534 ATP6V0A2Q9Y487 856 aa3.26□□□□□ -1.89
SCFD1-221ENST00000556534 RNF103-CHMP3A0A140T963 221 aa3.25□□□□□ -1.89
SCFD1-221ENST00000556534 TMEM89A2RUT3 159 aa3.25□□□□□ -1.89
SCFD1-221ENST00000556534 MFSD2BA6NFX1 497 aa3.25□□□□□ -1.89
SCFD1-221ENST00000556534 FRG2CA6NGY1 282 aa3.25□□□□□ -1.89
SCFD1-221ENST00000556534 A8MX80 341 aa3.25□□□□□ -1.89
SCFD1-221ENST00000556534 PDLIM1O00151 329 aa3.25□□□□□ -1.89
SCFD1-221ENST00000556534 EI24O14681 340 aa3.25□□□□□ -1.89
SCFD1-221ENST00000556534 GPAA1O43292 621 aa3.25□□□□□ -1.89
SCFD1-221ENST00000556534 TYROBPO43914 113 aa3.25□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms