RNA–Protein interactions for RNA: ENST00000554872.5

CCDC88C-209, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 4

Gene CCDC88C, Length 1,165 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-209ENST00000554872 PACS2Q86VP3 889 aa14.7□□□□□ -0.06
CCDC88C-209ENST00000554872 SIMC1Q8NDZ2 872 aa14.7□□□□□ -0.06
CCDC88C-209ENST00000554872 NEIL3Q8TAT5 605 aa14.7□□□□□ -0.06
CCDC88C-209ENST00000554872 TCP10LQ8TDR4 215 aa14.7□□□□□ -0.06
CCDC88C-209ENST00000554872 ASB5Q8WWX0 329 aa14.7□□□□□ -0.06
CCDC88C-209ENST00000554872 OMA1Q96E52 524 aa14.7□□□□□ -0.06
CCDC88C-209ENST00000554872 SLC35A4Q96G79 324 aa14.7□□□□□ -0.06
CCDC88C-209ENST00000554872 TUBB1Q9H4B7 451 aa14.7□□□□□ -0.06
CCDC88C-209ENST00000554872 LRTM1Q9HBL6 345 aa14.7□□□□□ -0.06
CCDC88C-209ENST00000554872 EML4Q9HC35 981 aaKnown RBP14.7□□□□□ -0.06
CCDC88C-209ENST00000554872 SSU72Q9NP77 194 aaKnown RBP14.7□□□□□ -0.06
CCDC88C-209ENST00000554872 MIEF1Q9NQG6 463 aa14.7□□□□□ -0.06
CCDC88C-209ENST00000554872 PFDN4Q9NQP4 134 aa14.7□□□□□ -0.06
CCDC88C-209ENST00000554872 TAS2R9Q9NYW1 312 aa14.7□□□□□ -0.06
CCDC88C-209ENST00000554872 COQ3Q9NZJ6 369 aa14.7□□□□□ -0.06
CCDC88C-209ENST00000554872 SLC17A7Q9P2U7 560 aa14.7□□□□□ -0.06
CCDC88C-209ENST00000554872 LRBAP50851 2863 aa14.7□□□□□ -0.06
CCDC88C-209ENST00000554872 PHF3Q92576 2039 aaKnown RBP14.7□□□□□ -0.06
CCDC88C-209ENST00000554872 APCP25054 2843 aa14.69□□□□□ -0.06
CCDC88C-209ENST00000554872 NPIPA2E9PIF3 369 aa14.69□□□□□ -0.06
CCDC88C-209ENST00000554872 NPIPA3F8WFD2 350 aa14.69□□□□□ -0.06
CCDC88C-209ENST00000554872 LSM1O15116 133 aaKnown RBP14.69□□□□□ -0.06
CCDC88C-209ENST00000554872 COQ9O75208 318 aa14.69□□□□□ -0.06
CCDC88C-209ENST00000554872 GABRA1P14867 456 aa14.69□□□□□ -0.06
CCDC88C-209ENST00000554872 GRNP28799 593 aaKnown RBP14.69□□□□□ -0.06
CCDC88C-209ENST00000554872 CHRNB4P30926 498 aa14.69□□□□□ -0.06
CCDC88C-209ENST00000554872 NTSP30990 170 aa14.69□□□□□ -0.06
CCDC88C-209ENST00000554872 ETV4P43268 484 aa14.69□□□□□ -0.06
CCDC88C-209ENST00000554872 CDK9P50750 372 aaKnown RBP14.69□□□□□ -0.06
CCDC88C-209ENST00000554872 UGT3A2Q3SY77 523 aa14.69□□□□□ -0.06
CCDC88C-209ENST00000554872 NHSL2Q5HYW2 709 aa14.69□□□□□ -0.06
CCDC88C-209ENST00000554872 CLYBLQ8N0X4 340 aa14.69□□□□□ -0.06
CCDC88C-209ENST00000554872 OR2L13Q8N349 312 aa14.69□□□□□ -0.06
CCDC88C-209ENST00000554872 OR7G2Q8NG99 324 aa14.69□□□□□ -0.06
CCDC88C-209ENST00000554872 OR5M3Q8NGP4 307 aa14.69□□□□□ -0.06
CCDC88C-209ENST00000554872 MARVELD3Q96A59 401 aa14.69□□□□□ -0.06
CCDC88C-209ENST00000554872 BBS4Q96RK4 519 aa14.69□□□□□ -0.06
CCDC88C-209ENST00000554872 TREX2Q9BQ50 279 aaPredicted RBP14.69□□□□□ -0.06
CCDC88C-209ENST00000554872 PARD6BQ9BYG5 372 aa14.69□□□□□ -0.06
CCDC88C-209ENST00000554872 PNPLA3Q9NST1 481 aa14.69□□□□□ -0.06
CCDC88C-209ENST00000554872 SPRR3Q9UBC9 169 aa14.69□□□□□ -0.06
CCDC88C-209ENST00000554872 C19orf53Q9UNZ5 99 aaPredicted RBP14.69□□□□□ -0.06
CCDC88C-209ENST00000554872 POLR3HQ9Y535 204 aaPredicted RBP14.69□□□□□ -0.06
CCDC88C-209ENST00000554872 CACNA1CQ13936 2221 aa14.69□□□□□ -0.06
CCDC88C-209ENST00000554872 ESPNB1AK53 854 aa14.68□□□□□ -0.06
CCDC88C-209ENST00000554872 FAM47E-STBD1D6RA91 191 aa14.68□□□□□ -0.06
CCDC88C-209ENST00000554872 TSPAN2O60636 221 aa14.68□□□□□ -0.06
CCDC88C-209ENST00000554872 UGT2B11O75310 529 aa14.68□□□□□ -0.06
CCDC88C-209ENST00000554872 SEC22BO75396 215 aa14.68□□□□□ -0.06
CCDC88C-209ENST00000554872 ERN1O75460 977 aaKnown RBP14.68□□□□□ -0.06
CCDC88C-209ENST00000554872 PTGDSP41222 190 aa14.68□□□□□ -0.06
CCDC88C-209ENST00000554872 FRKP42685 505 aaPredicted RBP14.68□□□□□ -0.06
CCDC88C-209ENST00000554872 PDE7AQ13946 482 aa14.68□□□□□ -0.06
CCDC88C-209ENST00000554872 CDSNQ15517 529 aa14.68□□□□□ -0.06
CCDC88C-209ENST00000554872 XKR7Q5GH72 579 aa14.68□□□□□ -0.06
CCDC88C-209ENST00000554872 ARL13AQ5H913 290 aaPredicted RBP14.68□□□□□ -0.06
CCDC88C-209ENST00000554872 WLSQ5T9L3 541 aa14.68□□□□□ -0.06
CCDC88C-209ENST00000554872 TIGD3Q6B0B8 471 aa14.68□□□□□ -0.06
CCDC88C-209ENST00000554872 C3P1Q6ZMU1 363 aa14.68□□□□□ -0.06
CCDC88C-209ENST00000554872 NCCRP1Q6ZVX7 275 aaPredicted RBP14.68□□□□□ -0.06
CCDC88C-209ENST00000554872 OR2T11Q8NH01 316 aa14.68□□□□□ -0.06
CCDC88C-209ENST00000554872 RND1Q92730 232 aa14.68□□□□□ -0.06
CCDC88C-209ENST00000554872 KAT2AQ92830 837 aa14.68□□□□□ -0.06
CCDC88C-209ENST00000554872 AMDHD1Q96NU7 426 aa14.68□□□□□ -0.06
CCDC88C-209ENST00000554872 COL21A1Q96P44 957 aa14.68□□□□□ -0.06
CCDC88C-209ENST00000554872 OSBPL11Q9BXB4 747 aa14.68□□□□□ -0.06
CCDC88C-209ENST00000554872 LDAHQ9H6V9 325 aa14.68□□□□□ -0.06
CCDC88C-209ENST00000554872 FOLH1BQ9HBA9 442 aa14.68□□□□□ -0.06
CCDC88C-209ENST00000554872 TRAF6Q9Y4K3 522 aa14.68□□□□□ -0.06
CCDC88C-209ENST00000554872 FAM215AQ9Y5M1 114 aa14.68□□□□□ -0.06
CCDC88C-209ENST00000554872 FBN2P35556 2912 aa14.67□□□□□ -0.06
CCDC88C-209ENST00000554872 PRAMEF25A6NGN4 478 aa14.67□□□□□ -0.06
CCDC88C-209ENST00000554872 TTC36A6NLP5 189 aa14.67□□□□□ -0.06
CCDC88C-209ENST00000554872 SNPHO15079 494 aa14.67□□□□□ -0.06
CCDC88C-209ENST00000554872 CHRNGP07510 517 aa14.67□□□□□ -0.06
CCDC88C-209ENST00000554872 BPGMP07738 259 aa14.67□□□□□ -0.06
CCDC88C-209ENST00000554872 SDC1P18827 310 aa14.67□□□□□ -0.06
CCDC88C-209ENST00000554872 TACR1P25103 407 aa14.67□□□□□ -0.06
CCDC88C-209ENST00000554872 GDF1P27539 372 aa14.67□□□□□ -0.06
CCDC88C-209ENST00000554872 PTPN6P29350 595 aa14.67□□□□□ -0.06
CCDC88C-209ENST00000554872 ASMTP46597 345 aa14.67□□□□□ -0.06
CCDC88C-209ENST00000554872 NCBP2P52298 156 aaKnown RBP eCLIP14.67□□□□□ -0.06
CCDC88C-209ENST00000554872 PNLIPRP2P54317 469 aa14.67□□□□□ -0.06
CCDC88C-209ENST00000554872 MRPS22P82650 360 aaKnown RBP14.67□□□□□ -0.06
CCDC88C-209ENST00000554872 ZNF844Q08AG5 666 aa14.67□□□□□ -0.06
CCDC88C-209ENST00000554872 EFR3AQ14156 821 aa14.67□□□□□ -0.06
CCDC88C-209ENST00000554872 NNATQ16517 81 aa14.67□□□□□ -0.06
CCDC88C-209ENST00000554872 PRSS53Q2L4Q9 553 aa14.67□□□□□ -0.06
CCDC88C-209ENST00000554872 TNFAIP8L3Q5GJ75 292 aa14.67□□□□□ -0.06
CCDC88C-209ENST00000554872 BICRALQ6AI39 1079 aa14.67□□□□□ -0.06
CCDC88C-209ENST00000554872 NPSR1Q6W5P4 371 aa14.67□□□□□ -0.06
CCDC88C-209ENST00000554872 B3GNT6Q6ZMB0 384 aa14.67□□□□□ -0.06
CCDC88C-209ENST00000554872 CROCCP2Q86T23 111 aa14.67□□□□□ -0.06
CCDC88C-209ENST00000554872 PRR22Q8IZ63 422 aa14.67□□□□□ -0.06
CCDC88C-209ENST00000554872 LILRB4Q8NHJ6 448 aa14.67□□□□□ -0.06
CCDC88C-209ENST00000554872 CA5BP1Q8WTZ4 195 aa14.67□□□□□ -0.06
CCDC88C-209ENST00000554872 TWIST2Q8WVJ9 160 aa14.67□□□□□ -0.06
CCDC88C-209ENST00000554872 HOXB13Q92826 284 aaPredicted RBP14.67□□□□□ -0.06
CCDC88C-209ENST00000554872 SDCCAG3Q96C92 435 aa14.67□□□□□ -0.06
CCDC88C-209ENST00000554872 TMCO6Q96DC7 493 aa14.67□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms