RNA–Protein interactions for RNA: ENST00000554811.5

XRCC3-208, Transcript of X-ray repair cross complementing 3, human

TSL 2

Gene XRCC3, Length 3,668 nt, Biotype retained intron, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
XRCC3-208	ENST00000554811	CNIH2	Q6PI25	160 aa		11.19	□□□□□ -0.62
XRCC3-208	ENST00000554811	TBC1D3	Q8IZP1	549 aa	Predicted RBP	11.19	□□□□□ -0.62
XRCC3-208	ENST00000554811	ASCC1	Q8N9N2	400 aa	Known RBP	11.19	□□□□□ -0.62
XRCC3-208	ENST00000554811	BBS1	Q8NFJ9	593 aa		11.19	□□□□□ -0.62
XRCC3-208	ENST00000554811	OR52I1	Q8NGK6	324 aa		11.19	□□□□□ -0.62
XRCC3-208	ENST00000554811	FBLIM1	Q8WUP2	373 aa		11.19	□□□□□ -0.62
XRCC3-208	ENST00000554811	PPP1R16A	Q96I34	528 aa		11.19	□□□□□ -0.62
XRCC3-208	ENST00000554811	HOXD1	Q9GZZ0	328 aa		11.19	□□□□□ -0.62
XRCC3-208	ENST00000554811	SAP130	Q9H0E3	1048 aa		11.19	□□□□□ -0.62
XRCC3-208	ENST00000554811	HCN2	Q9UL51	889 aa		11.19	□□□□□ -0.62
XRCC3-208	ENST00000554811	CA5B	Q9Y2D0	317 aa		11.19	□□□□□ -0.62
XRCC3-208	ENST00000554811	HSPB11	Q9Y547	144 aa		11.19	□□□□□ -0.62
XRCC3-208	ENST00000554811	HEPACAM2	A8MVW5	462 aa		11.19	□□□□□ -0.62
XRCC3-208	ENST00000554811	OLFM2	O95897	454 aa		11.19	□□□□□ -0.62
XRCC3-208	ENST00000554811	PEPD	P12955	493 aa		11.19	□□□□□ -0.62
XRCC3-208	ENST00000554811	ZNF234	Q14588	700 aa		11.19	□□□□□ -0.62
XRCC3-208	ENST00000554811	EIF4H	Q15056	248 aa	Known RBP	11.19	□□□□□ -0.62
XRCC3-208	ENST00000554811	SLC27A4	Q6P1M0	643 aa		11.19	□□□□□ -0.62
XRCC3-208	ENST00000554811	ZSCAN2	Q7Z7L9	614 aa	Predicted RBP	11.19	□□□□□ -0.62
XRCC3-208	ENST00000554811	HDDC3	Q8N4P3	179 aa		11.19	□□□□□ -0.62
XRCC3-208	ENST00000554811	ZNF557	Q8N988	423 aa	Predicted RBP	11.19	□□□□□ -0.62
XRCC3-208	ENST00000554811	ZNF354B	Q96LW1	612 aa		11.19	□□□□□ -0.62
XRCC3-208	ENST00000554811	FRMD6	Q96NE9	622 aa		11.19	□□□□□ -0.62
XRCC3-208	ENST00000554811	GPA33	Q99795	319 aa		11.19	□□□□□ -0.62
XRCC3-208	ENST00000554811	NEUROD4	Q9HD90	331 aa		11.19	□□□□□ -0.62
XRCC3-208	ENST00000554811	COQ3	Q9NZJ6	369 aa		11.19	□□□□□ -0.62
XRCC3-208	ENST00000554811	MRPL15	Q9P015	296 aa	Known RBP	11.19	□□□□□ -0.62
XRCC3-208	ENST00000554811	KLHL42	Q9P2K6	505 aa		11.19	□□□□□ -0.62
XRCC3-208	ENST00000554811	PLXNA4	Q9HCM2	1894 aa		11.18	□□□□□ -0.62
XRCC3-208	ENST00000554811	PRUNE2	Q8WUY3	3088 aa		11.18	□□□□□ -0.62
XRCC3-208	ENST00000554811	PIP5K1C	O60331	668 aa		11.18	□□□□□ -0.62
XRCC3-208	ENST00000554811	SEMG1	P04279	462 aa		11.18	□□□□□ -0.62
XRCC3-208	ENST00000554811	UGT2B10	P36537	528 aa		11.18	□□□□□ -0.62
XRCC3-208	ENST00000554811	CTBP2	P56545	445 aa		11.18	□□□□□ -0.62
XRCC3-208	ENST00000554811	SMIM11A	P58511	58 aa		11.18	□□□□□ -0.62
XRCC3-208	ENST00000554811	P2RY14	Q15391	338 aa		11.18	□□□□□ -0.62
XRCC3-208	ENST00000554811	SYT14P1	Q58G82	188 aa		11.18	□□□□□ -0.62
XRCC3-208	ENST00000554811	LCN1P1	Q5VSP4	162 aa		11.18	□□□□□ -0.62
XRCC3-208	ENST00000554811	PLBD1	Q6P4A8	553 aa		11.18	□□□□□ -0.62
XRCC3-208	ENST00000554811	VIT	Q6UXI7	678 aa		11.18	□□□□□ -0.62
XRCC3-208	ENST00000554811	UNC5D	Q6UXZ4	953 aa		11.18	□□□□□ -0.62
XRCC3-208	ENST00000554811	COMTD1	Q86VU5	262 aa		11.18	□□□□□ -0.62
XRCC3-208	ENST00000554811	ANKK1	Q8NFD2	765 aa		11.18	□□□□□ -0.62
XRCC3-208	ENST00000554811	ASB15	Q8WXK1	588 aa		11.18	□□□□□ -0.62
XRCC3-208	ENST00000554811	TXNDC15	Q96J42	360 aa		11.18	□□□□□ -0.62
XRCC3-208	ENST00000554811	LRRC3B	Q96PB8	259 aa		11.18	□□□□□ -0.62
XRCC3-208	ENST00000554811	SLC35C2	Q9NQQ7	365 aa		11.18	□□□□□ -0.62
XRCC3-208	ENST00000554811	FTSJ1	Q9UET6	329 aa		11.18	□□□□□ -0.62
XRCC3-208	ENST00000554811	ATG4B	Q9Y4P1	393 aa		11.18	□□□□□ -0.62
XRCC3-208	ENST00000554811	ZNF780B	Q9Y6R6	833 aa		11.18	□□□□□ -0.62
XRCC3-208	ENST00000554811	HEATR5B	Q9P2D3	2071 aa		11.18	□□□□□ -0.62
XRCC3-208	ENST00000554811	PLXND1	Q9Y4D7	1925 aa		11.18	□□□□□ -0.62
XRCC3-208	ENST00000554811	SNTN	A6NMZ2	147 aa		11.18	□□□□□ -0.62
XRCC3-208	ENST00000554811		H3BQ06	376 aa	Predicted RBP	11.18	□□□□□ -0.62
XRCC3-208	ENST00000554811	MAGEB4	O15481	346 aa	Predicted RBP	11.18	□□□□□ -0.62
XRCC3-208	ENST00000554811	ALPP	P05187	535 aa		11.18	□□□□□ -0.62
XRCC3-208	ENST00000554811	SCG5	P05408	212 aa		11.18	□□□□□ -0.62
XRCC3-208	ENST00000554811	CLTB	P09497	229 aa		11.18	□□□□□ -0.62
XRCC3-208	ENST00000554811	DEFB134	Q4QY38	66 aa		11.18	□□□□□ -0.62
XRCC3-208	ENST00000554811	FAM27D1	Q5T7N8	215 aa		11.18	□□□□□ -0.62
XRCC3-208	ENST00000554811	YAF2	Q8IY57	180 aa		11.18	□□□□□ -0.62
XRCC3-208	ENST00000554811	KLHDC8A	Q8IYD2	350 aa		11.18	□□□□□ -0.62
XRCC3-208	ENST00000554811	C11orf24	Q96F05	449 aa	Predicted RBP	11.18	□□□□□ -0.62
XRCC3-208	ENST00000554811	MCHR1	Q99705	422 aa		11.18	□□□□□ -0.62
XRCC3-208	ENST00000554811	PSD2	Q9BQI7	771 aa		11.18	□□□□□ -0.62
XRCC3-208	ENST00000554811	SPATA9	Q9BWV2	254 aa		11.18	□□□□□ -0.62
XRCC3-208	ENST00000554811	WDR26	Q9H7D7	661 aa		11.18	□□□□□ -0.62
XRCC3-208	ENST00000554811	WSB2	Q9NYS7	404 aa	Predicted RBP	11.18	□□□□□ -0.62
XRCC3-208	ENST00000554811	CCDC59	Q9P031	241 aa	Known RBP	11.18	□□□□□ -0.62
XRCC3-208	ENST00000554811	TBC1D24	Q9ULP9	559 aa		11.18	□□□□□ -0.62
XRCC3-208	ENST00000554811	NOX1	Q9Y5S8	564 aa		11.18	□□□□□ -0.62
XRCC3-208	ENST00000554811	PLXNA3	P51805	1871 aa		11.18	□□□□□ -0.62
XRCC3-208	ENST00000554811	PSMD9	O00233	223 aa		11.17	□□□□□ -0.62
XRCC3-208	ENST00000554811	SOCS6	O14544	535 aa		11.17	□□□□□ -0.62
XRCC3-208	ENST00000554811	KIAA0355	O15063	1070 aa		11.17	□□□□□ -0.62
XRCC3-208	ENST00000554811	FCMR	O60667	390 aa		11.17	□□□□□ -0.62
XRCC3-208	ENST00000554811	SEMA7A	O75326	666 aa		11.17	□□□□□ -0.62
XRCC3-208	ENST00000554811	MYOG	P15173	224 aa		11.17	□□□□□ -0.62
XRCC3-208	ENST00000554811	THOC7	Q6I9Y2	204 aa	Known RBP	11.17	□□□□□ -0.62
XRCC3-208	ENST00000554811	FIGNL1	Q6PIW4	674 aa		11.17	□□□□□ -0.62
XRCC3-208	ENST00000554811	ERN2	Q76MJ5	926 aa	Known RBP	11.17	□□□□□ -0.62
XRCC3-208	ENST00000554811	PRICKLE2	Q7Z3G6	844 aa		11.17	□□□□□ -0.62
XRCC3-208	ENST00000554811	CPO	Q8IVL8	374 aa		11.17	□□□□□ -0.62
XRCC3-208	ENST00000554811	IL17RD	Q8NFM7	739 aa		11.17	□□□□□ -0.62
XRCC3-208	ENST00000554811	CHST8	Q9H2A9	424 aa		11.17	□□□□□ -0.62
XRCC3-208	ENST00000554811	KLK4	Q9Y5K2	254 aa		11.17	□□□□□ -0.62
XRCC3-208	ENST00000554811	OTOL1	A6NHN0	477 aa	Predicted RBP	11.17	□□□□□ -0.62
XRCC3-208	ENST00000554811	DVL2	O14641	736 aa		11.17	□□□□□ -0.62
XRCC3-208	ENST00000554811	RPN2	P04844	631 aa		11.17	□□□□□ -0.62
XRCC3-208	ENST00000554811	BMPR1A	P36894	532 aa		11.17	□□□□□ -0.62
XRCC3-208	ENST00000554811	TALDO1	P37837	337 aa		11.17	□□□□□ -0.62
XRCC3-208	ENST00000554811	CCDC80	Q76M96	950 aa		11.17	□□□□□ -0.62
XRCC3-208	ENST00000554811	SYT9	Q86SS6	491 aa		11.17	□□□□□ -0.62
XRCC3-208	ENST00000554811	ZNF761	Q86XN6	746 aa	Predicted RBP	11.17	□□□□□ -0.62
XRCC3-208	ENST00000554811	NKAIN4	Q8IVV8	208 aa		11.17	□□□□□ -0.62
XRCC3-208	ENST00000554811	UXS1	Q8NBZ7	420 aa		11.17	□□□□□ -0.62
XRCC3-208	ENST00000554811	FLCN	Q8NFG4	579 aa		11.17	□□□□□ -0.62
XRCC3-208	ENST00000554811	PIGX	Q8TBF5	258 aa		11.17	□□□□□ -0.62
XRCC3-208	ENST00000554811	SAMD8	Q96LT4	415 aa		11.17	□□□□□ -0.62
XRCC3-208	ENST00000554811	ZNF582	Q96NG8	517 aa	Predicted RBP	11.17	□□□□□ -0.62

Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms