RNA–Protein interactions for RNA: ENST00000553403.1

CCDC88C-205, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-205ENST00000553403 WFDC6Q9BQY6 131 aa24.63■■□□□ 1.53
CCDC88C-205ENST00000553403 PIGUQ9H490 435 aa24.63■■□□□ 1.53
CCDC88C-205ENST00000553403 PTTG2Q9NZH5 202 aa24.63■■□□□ 1.53
CCDC88C-205ENST00000553403 MAT2BQ9NZL9 334 aa24.63■■□□□ 1.53
CCDC88C-205ENST00000553403 MGAT4BQ9UQ53 548 aa24.63■■□□□ 1.53
CCDC88C-205ENST00000553403 TPRKBQ9Y3C4 175 aa24.63■■□□□ 1.53
CCDC88C-205ENST00000553403 RNF215Q9Y6U7 377 aa24.63■■□□□ 1.53
CCDC88C-205ENST00000553403 EML5Q05BV3 1969 aa24.63■■□□□ 1.53
CCDC88C-205ENST00000553403 CCDC163A0A0D9SF12 145 aa24.62■■□□□ 1.53
CCDC88C-205ENST00000553403 M0R3H8 397 aa24.62■■□□□ 1.53
CCDC88C-205ENST00000553403 ADAP00813 363 aa24.62■■□□□ 1.53
CCDC88C-205ENST00000553403 SLC35E2P0CK97 266 aa24.62■■□□□ 1.53
CCDC88C-205ENST00000553403 ACP2P11117 423 aa24.62■■□□□ 1.53
CCDC88C-205ENST00000553403 RNH1P13489 461 aaKnown RBP24.62■■□□□ 1.53
CCDC88C-205ENST00000553403 MGAT2Q10469 447 aa24.62■■□□□ 1.53
CCDC88C-205ENST00000553403 PMS2P3Q13401 168 aa24.62■■□□□ 1.53
CCDC88C-205ENST00000553403 PROX2Q3B8N5 592 aa24.62■■□□□ 1.53
CCDC88C-205ENST00000553403 INAVAQ3KP66 663 aa24.62■■□□□ 1.53
CCDC88C-205ENST00000553403 FGD3Q5JSP0 725 aa24.62■■□□□ 1.53
CCDC88C-205ENST00000553403 CDS1Q92903 461 aa24.62■■□□□ 1.53
CCDC88C-205ENST00000553403 CNDP2Q96KP4 475 aaKnown RBP24.62■■□□□ 1.53
CCDC88C-205ENST00000553403 ARHGDIGQ99819 225 aa24.62■■□□□ 1.53
CCDC88C-205ENST00000553403 FUZQ9BT04 418 aa24.62■■□□□ 1.53
CCDC88C-205ENST00000553403 PDE7BQ9NP56 450 aa24.62■■□□□ 1.53
CCDC88C-205ENST00000553403 CCDC88CQ9P219 2028 aa24.62■■□□□ 1.53
CCDC88C-205ENST00000553403 A0A1W2PRQ8 180 aa24.62■■□□□ 1.53
CCDC88C-205ENST00000553403 FOXS1O43638 330 aa24.62■■□□□ 1.53
CCDC88C-205ENST00000553403 NSA2O95478 260 aaKnown RBP24.62■■□□□ 1.53
CCDC88C-205ENST00000553403 PRKAR1BP31321 381 aa24.62■■□□□ 1.53
CCDC88C-205ENST00000553403 PDX1P52945 283 aa24.62■■□□□ 1.53
CCDC88C-205ENST00000553403 GFERP55789 205 aa24.62■■□□□ 1.53
CCDC88C-205ENST00000553403 SH3BGRP55822 239 aaPredicted RBP24.62■■□□□ 1.53
CCDC88C-205ENST00000553403 CSNK2BP67870 215 aa24.62■■□□□ 1.53
CCDC88C-205ENST00000553403 DGCR6Q14129 220 aa24.62■■□□□ 1.53
CCDC88C-205ENST00000553403 TCTE1Q5JU00 501 aa24.62■■□□□ 1.53
CCDC88C-205ENST00000553403 B3GNT6Q6ZMB0 384 aa24.62■■□□□ 1.53
CCDC88C-205ENST00000553403 SPARTQ8N0X7 666 aa24.62■■□□□ 1.53
CCDC88C-205ENST00000553403 CARFQ8N187 725 aa24.62■■□□□ 1.53
CCDC88C-205ENST00000553403 OR6C4Q8NGE1 309 aa24.62■■□□□ 1.53
CCDC88C-205ENST00000553403 SLC9A6Q92581 669 aa24.62■■□□□ 1.53
CCDC88C-205ENST00000553403 NMD3Q96D46 503 aaKnown RBP24.62■■□□□ 1.53
CCDC88C-205ENST00000553403 FAM122AQ96E09 287 aa24.62■■□□□ 1.53
CCDC88C-205ENST00000553403 PRRC1Q96M27 445 aa24.62■■□□□ 1.53
CCDC88C-205ENST00000553403 MTHFD2LQ9H903 347 aaPredicted RBP24.62■■□□□ 1.53
CCDC88C-205ENST00000553403 SCN3BQ9NY72 215 aa24.62■■□□□ 1.53
CCDC88C-205ENST00000553403 LRIT1Q9P2V4 623 aa24.62■■□□□ 1.53
CCDC88C-205ENST00000553403 IFT52Q9Y366 437 aa24.62■■□□□ 1.53
CCDC88C-205ENST00000553403 A0A0A6YYC8 382 aaPredicted RBP24.61■■□□□ 1.53
CCDC88C-205ENST00000553403 I3L1I5 382 aaPredicted RBP24.61■■□□□ 1.53
CCDC88C-205ENST00000553403 ZNF701M0R085 212 aaPredicted RBP24.61■■□□□ 1.53
CCDC88C-205ENST00000553403 UGT2B17O75795 530 aa24.61■■□□□ 1.53
CCDC88C-205ENST00000553403 GASTP01350 101 aa24.61■■□□□ 1.53
CCDC88C-205ENST00000553403 PPM1FP49593 454 aaPredicted RBP24.61■■□□□ 1.53
CCDC88C-205ENST00000553403 DUSP5Q16690 384 aa24.61■■□□□ 1.53
CCDC88C-205ENST00000553403 BMP8AQ7Z5Y6 402 aa24.61■■□□□ 1.53
CCDC88C-205ENST00000553403 SHISA5Q8N114 240 aa24.61■■□□□ 1.53
CCDC88C-205ENST00000553403 LINC00471Q8N535 108 aa24.61■■□□□ 1.53
CCDC88C-205ENST00000553403 CDRT4Q8N9R6 151 aa24.61■■□□□ 1.53
CCDC88C-205ENST00000553403 OR6T1Q8NGN1 323 aa24.61■■□□□ 1.53
CCDC88C-205ENST00000553403 CTHRC1Q96CG8 243 aa24.61■■□□□ 1.53
CCDC88C-205ENST00000553403 STACQ99469 402 aa24.61■■□□□ 1.53
CCDC88C-205ENST00000553403 SLC13A4Q9UKG4 626 aa24.61■■□□□ 1.53
CCDC88C-205ENST00000553403 SNX5Q9Y5X3 404 aa24.61■■□□□ 1.53
CCDC88C-205ENST00000553403 IGHV5-51A0A0C4DH38 117 aa24.6■■□□□ 1.53
CCDC88C-205ENST00000553403 A0A1B0GVT2 93 aa24.6■■□□□ 1.53
CCDC88C-205ENST00000553403 HYKKA2RU49 373 aa24.6■■□□□ 1.53
CCDC88C-205ENST00000553403 MRPS14O60783 128 aaKnown RBP24.6■■□□□ 1.53
CCDC88C-205ENST00000553403 MED26O95402 600 aa24.6■■□□□ 1.53
CCDC88C-205ENST00000553403 ALOX5P09917 674 aa24.6■■□□□ 1.53
CCDC88C-205ENST00000553403 FMO3P31513 532 aa24.6■■□□□ 1.53
CCDC88C-205ENST00000553403 TEKQ02763 1124 aa24.6■■□□□ 1.53
CCDC88C-205ENST00000553403 RAB39AQ14964 217 aa24.6■■□□□ 1.53
CCDC88C-205ENST00000553403 FRRS1Q6ZNA5 592 aa24.6■■□□□ 1.53
CCDC88C-205ENST00000553403 WDR53Q7Z5U6 358 aaPredicted RBP24.6■■□□□ 1.53
CCDC88C-205ENST00000553403 ENTHD1Q8IYW4 607 aa24.6■■□□□ 1.53
CCDC88C-205ENST00000553403 DEPDC4Q8N2C3 294 aa24.6■■□□□ 1.53
CCDC88C-205ENST00000553403 NODALQ96S42 347 aa24.6■■□□□ 1.53
CCDC88C-205ENST00000553403 FNDC11Q9BVV2 318 aa24.6■■□□□ 1.53
CCDC88C-205ENST00000553403 DUSP21Q9H596 190 aa24.6■■□□□ 1.53
CCDC88C-205ENST00000553403 DUSP22Q9NRW4 184 aa24.6■■□□□ 1.53
CCDC88C-205ENST00000553403 SOHLH2Q9NX45 425 aa24.6■■□□□ 1.53
CCDC88C-205ENST00000553403 SATB2Q9UPW6 733 aa24.6■■□□□ 1.53
CCDC88C-205ENST00000553403 MRPS33Q9Y291 106 aaKnown RBP24.6■■□□□ 1.53
CCDC88C-205ENST00000553403 ABCA7Q8IZY2 2146 aa24.6■■□□□ 1.53
CCDC88C-205ENST00000553403 TRIOO75962 3097 aa24.6■■□□□ 1.53
CCDC88C-205ENST00000553403 FITM1A5D6W6 292 aa24.59■■□□□ 1.53
CCDC88C-205ENST00000553403 NUDT21O43809 227 aaKnown RBP24.59■■□□□ 1.53
CCDC88C-205ENST00000553403 NME6O75414 186 aaPredicted RBP24.59■■□□□ 1.53
CCDC88C-205ENST00000553403 ZIC2O95409 532 aaPredicted RBP24.59■■□□□ 1.53
CCDC88C-205ENST00000553403 ZBTB11O95625 1053 aaPredicted RBP24.59■■□□□ 1.53
CCDC88C-205ENST00000553403 HTR1AP08908 422 aa24.59■■□□□ 1.53
CCDC88C-205ENST00000553403 CTSKP43235 329 aa24.59■■□□□ 1.53
CCDC88C-205ENST00000553403 EMP3P54852 163 aa24.59■■□□□ 1.53
CCDC88C-205ENST00000553403 NEDD8Q15843 81 aa24.59■■□□□ 1.53
CCDC88C-205ENST00000553403 MLIPQ5VWP3 458 aa24.59■■□□□ 1.53
CCDC88C-205ENST00000553403 VRK2Q86Y07 508 aa24.59■■□□□ 1.53
CCDC88C-205ENST00000553403 SIMC1Q8NDZ2 872 aa24.59■■□□□ 1.53
CCDC88C-205ENST00000553403 OR52P1PQ8NH57 321 aa24.59■■□□□ 1.53
CCDC88C-205ENST00000553403 GTPBP3Q969Y2 492 aaKnown RBP24.59■■□□□ 1.53
CCDC88C-205ENST00000553403 QRSL1Q9H0R6 528 aaKnown RBP24.59■■□□□ 1.53
Retrieved 100 of 20,778 RNA–protein pairs in 48.1 ms