RNA–Protein interactions for RNA: ENST00000545540.5

USP28-214, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2 BASIC

Gene USP28, Length 3,431 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-214ENST00000545540 TIE1P35590 1138 aa14.16□□□□□ -0.14
USP28-214ENST00000545540 MLF2Q15773 248 aaPredicted RBP14.16□□□□□ -0.14
USP28-214ENST00000545540 RNASE12Q5GAN4 147 aaKnown RBP14.16□□□□□ -0.14
USP28-214ENST00000545540 C12orf73Q69YU5 71 aa14.16□□□□□ -0.14
USP28-214ENST00000545540 LRRTM4Q86VH4 590 aa14.16□□□□□ -0.14
USP28-214ENST00000545540 RAB43Q86YS6 212 aa14.16□□□□□ -0.14
USP28-214ENST00000545540 FBXL6Q8N531 539 aa14.16□□□□□ -0.14
USP28-214ENST00000545540 SRRQ9GZT4 340 aa14.16□□□□□ -0.14
USP28-214ENST00000545540 SPHK1Q9NYA1 384 aa14.16□□□□□ -0.14
USP28-214ENST00000545540 DEC1Q9P2X7 70 aa14.16□□□□□ -0.14
USP28-214ENST00000545540 P2RX2Q9UBL9 471 aa14.16□□□□□ -0.14
USP28-214ENST00000545540 MAPRE3Q9UPY8 281 aa14.16□□□□□ -0.14
USP28-214ENST00000545540 MPZL2O60487 215 aa14.15□□□□□ -0.14
USP28-214ENST00000545540 CSNK1G2P78368 415 aa14.15□□□□□ -0.14
USP28-214ENST00000545540 RHAGQ02094 409 aa14.15□□□□□ -0.14
USP28-214ENST00000545540 CSTF1Q05048 431 aaKnown RBP14.15□□□□□ -0.14
USP28-214ENST00000545540 E2F2Q14209 437 aa14.15□□□□□ -0.14
USP28-214ENST00000545540 OR4C11Q6IEV9 310 aa14.15□□□□□ -0.14
USP28-214ENST00000545540 RRM2BQ7LG56 351 aa14.15□□□□□ -0.14
USP28-214ENST00000545540 RGMAQ96B86 450 aa14.15□□□□□ -0.14
USP28-214ENST00000545540 ST6GAL2Q96JF0 529 aa14.15□□□□□ -0.14
USP28-214ENST00000545540 A4GALTQ9NPC4 353 aa14.15□□□□□ -0.14
USP28-214ENST00000545540 SLC35C2Q9NQQ7 365 aa14.15□□□□□ -0.14
USP28-214ENST00000545540 SEMA4GQ9NTN9 838 aa14.15□□□□□ -0.14
USP28-214ENST00000545540 DKK3Q9UBP4 350 aa14.15□□□□□ -0.14
USP28-214ENST00000545540 NDRG2Q9UN36 371 aaKnown RBP14.15□□□□□ -0.14
USP28-214ENST00000545540 NPIPA5A0A0B4J1W7 369 aa14.15□□□□□ -0.14
USP28-214ENST00000545540 A0A0B4J293 547 aa14.15□□□□□ -0.14
USP28-214ENST00000545540 FAM170BA6NMN3 283 aa14.15□□□□□ -0.14
USP28-214ENST00000545540 NPIPA7E9PJI5 369 aa14.15□□□□□ -0.14
USP28-214ENST00000545540 MID1O15344 667 aa14.15□□□□□ -0.14
USP28-214ENST00000545540 NPIPA8P0DM63 369 aa14.15□□□□□ -0.14
USP28-214ENST00000545540 BCL6P41182 706 aa14.15□□□□□ -0.14
USP28-214ENST00000545540 SNRPD2P62316 118 aaKnown RBP14.15□□□□□ -0.14
USP28-214ENST00000545540 GPR50Q13585 617 aa14.15□□□□□ -0.14
USP28-214ENST00000545540 NCF4Q15080 339 aa14.15□□□□□ -0.14
USP28-214ENST00000545540 HNRNPA1L2Q32P51 320 aaKnown RBP14.15□□□□□ -0.14
USP28-214ENST00000545540 SNAP47Q5SQN1 464 aa14.15□□□□□ -0.14
USP28-214ENST00000545540 C1QTNF12Q5T7M4 302 aa14.15□□□□□ -0.14
USP28-214ENST00000545540 HSDL2Q6YN16 418 aa14.15□□□□□ -0.14
USP28-214ENST00000545540 ZNF730Q6ZMV8 503 aa14.15□□□□□ -0.14
USP28-214ENST00000545540 BBS10Q8TAM1 723 aa14.15□□□□□ -0.14
USP28-214ENST00000545540 GANCQ8TET4 914 aa14.15□□□□□ -0.14
USP28-214ENST00000545540 UBE2E3Q969T4 207 aa14.15□□□□□ -0.14
USP28-214ENST00000545540 RNF31Q96EP0 1072 aa14.15□□□□□ -0.14
USP28-214ENST00000545540 TMEM246Q9BRR3 403 aa14.15□□□□□ -0.14
USP28-214ENST00000545540 KATNB1Q9BVA0 655 aa14.15□□□□□ -0.14
USP28-214ENST00000545540 SEC14L4Q9UDX3 406 aa14.15□□□□□ -0.14
USP28-214ENST00000545540 INSL6Q9Y581 213 aa14.15□□□□□ -0.14
USP28-214ENST00000545540 KIAA1671Q9BY89 1806 aa14.15□□□□□ -0.14
USP28-214ENST00000545540 CENPVL1A0A0U1RR11 272 aa14.15□□□□□ -0.14
USP28-214ENST00000545540 TSPAN11A1L157 253 aa14.15□□□□□ -0.14
USP28-214ENST00000545540 HYKKA2RU49 373 aa14.15□□□□□ -0.14
USP28-214ENST00000545540 VEGFBP49765 207 aa14.15□□□□□ -0.14
USP28-214ENST00000545540 SLC16A1P53985 500 aa14.15□□□□□ -0.14
USP28-214ENST00000545540 SNRPGP62308 76 aaKnown RBP14.15□□□□□ -0.14
USP28-214ENST00000545540 CDK3Q00526 305 aa14.15□□□□□ -0.14
USP28-214ENST00000545540 LCTLQ6UWM7 567 aa14.15□□□□□ -0.14
USP28-214ENST00000545540 KCT2Q8NC54 265 aa14.15□□□□□ -0.14
USP28-214ENST00000545540 OR5K2Q8NHB8 316 aa14.15□□□□□ -0.14
USP28-214ENST00000545540 NDUFB11Q9NX14 153 aa14.15□□□□□ -0.14
USP28-214ENST00000545540 TMA7Q9Y2S6 64 aaKnown RBP14.15□□□□□ -0.14
USP28-214ENST00000545540 PLXNA2O75051 1894 aa14.14□□□□□ -0.15
USP28-214ENST00000545540 GUCY1B2O75343 617 aa14.14□□□□□ -0.15
USP28-214ENST00000545540 PSKH1P11801 424 aa14.14□□□□□ -0.15
USP28-214ENST00000545540 BCL2A1Q16548 175 aa14.14□□□□□ -0.15
USP28-214ENST00000545540 Q5BKY6 102 aa14.14□□□□□ -0.15
USP28-214ENST00000545540 ZNF311Q5JNZ3 666 aa14.14□□□□□ -0.15
USP28-214ENST00000545540 FAM27D1Q5T7N8 215 aa14.14□□□□□ -0.15
USP28-214ENST00000545540 ERN2Q76MJ5 926 aaKnown RBP14.14□□□□□ -0.15
USP28-214ENST00000545540 CREB3L4Q8TEY5 395 aa14.14□□□□□ -0.15
USP28-214ENST00000545540 MTERF3Q96E29 417 aa14.14□□□□□ -0.15
USP28-214ENST00000545540 DEPDC7Q96QD5 511 aa14.14□□□□□ -0.15
USP28-214ENST00000545540 ICKQ9UPZ9 632 aa14.14□□□□□ -0.15
USP28-214ENST00000545540 ZNF860A6NHJ4 632 aa14.14□□□□□ -0.15
USP28-214ENST00000545540 ITGB7P26010 798 aa14.14□□□□□ -0.15
USP28-214ENST00000545540 PPP2R1BP30154 601 aa14.14□□□□□ -0.15
USP28-214ENST00000545540 CTBP2P56545 445 aa14.14□□□□□ -0.15
USP28-214ENST00000545540 HYAL2Q12891 473 aa14.14□□□□□ -0.15
USP28-214ENST00000545540 VASH1Q7L8A9 365 aaPredicted RBP14.14□□□□□ -0.15
USP28-214ENST00000545540 GALNT12Q8IXK2 581 aa14.14□□□□□ -0.15
USP28-214ENST00000545540 NRSN1Q8IZ57 195 aa14.14□□□□□ -0.15
USP28-214ENST00000545540 PROKR2Q8NFJ6 384 aa14.14□□□□□ -0.15
USP28-214ENST00000545540 RHBGQ9H310 441 aa14.14□□□□□ -0.15
USP28-214ENST00000545540 GPSM3Q9Y4H4 160 aa14.14□□□□□ -0.15
USP28-214ENST00000545540 LRIT2A6NDA9 550 aa14.13□□□□□ -0.15
USP28-214ENST00000545540 CENPXA8MT69 81 aa14.13□□□□□ -0.15
USP28-214ENST00000545540 SOCS6O14544 535 aa14.13□□□□□ -0.15
USP28-214ENST00000545540 RAB36O95755 333 aa14.13□□□□□ -0.15
USP28-214ENST00000545540 AHRP35869 848 aa14.13□□□□□ -0.15
USP28-214ENST00000545540 KIR2DL3P43628 341 aa14.13□□□□□ -0.15
USP28-214ENST00000545540 KRT73Q86Y46 540 aa14.13□□□□□ -0.15
USP28-214ENST00000545540 KLHDC8AQ8IYD2 350 aa14.13□□□□□ -0.15
USP28-214ENST00000545540 ANKK1Q8NFD2 765 aa14.13□□□□□ -0.15
USP28-214ENST00000545540 SUSD6Q92537 303 aa14.13□□□□□ -0.15
USP28-214ENST00000545540 FAM83CQ9BQN1 747 aa14.13□□□□□ -0.15
USP28-214ENST00000545540 DPEP2Q9H4A9 486 aa14.13□□□□□ -0.15
USP28-214ENST00000545540 NEUROD4Q9HD90 331 aa14.13□□□□□ -0.15
USP28-214ENST00000545540 NLKQ9UBE8 527 aa14.13□□□□□ -0.15
USP28-214ENST00000545540 SLC9A8Q9Y2E8 581 aa14.13□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 59 ms