RNA–Protein interactions for RNA: ENST00000539506.5

SFSWAP-208, Transcript of splicing factor SWAP, humanhuman

TSL 5

Gene SFSWAP, Length 3,149 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-208ENST00000539506 DSPPQ9NZW4 1301 aa11.84□□□□□ -0.51
SFSWAP-208ENST00000539506 TRAV6A0A075B6T7 132 aa11.84□□□□□ -0.51
SFSWAP-208ENST00000539506 LOC105378220A0A1B0GUY1 285 aaPredicted RBP11.84□□□□□ -0.51
SFSWAP-208ENST00000539506 A8MVJ9 347 aa11.84□□□□□ -0.51
SFSWAP-208ENST00000539506 FRS3O43559 492 aa11.84□□□□□ -0.51
SFSWAP-208ENST00000539506 ERGP11308 486 aa11.84□□□□□ -0.51
SFSWAP-208ENST00000539506 CSTF2P33240 577 aaKnown RBP eCLIP11.84□□□□□ -0.51
SFSWAP-208ENST00000539506 GSTM5P46439 218 aa11.84□□□□□ -0.51
SFSWAP-208ENST00000539506 MAPK12P53778 367 aa11.84□□□□□ -0.51
SFSWAP-208ENST00000539506 PRKAG1P54619 331 aa11.84□□□□□ -0.51
SFSWAP-208ENST00000539506 PCBP4P57723 403 aaKnown RBP11.84□□□□□ -0.51
SFSWAP-208ENST00000539506 EIF4HQ15056 248 aaKnown RBP11.84□□□□□ -0.51
SFSWAP-208ENST00000539506 GPR19Q15760 415 aa11.84□□□□□ -0.51
SFSWAP-208ENST00000539506 SLC35F1Q5T1Q4 408 aa11.84□□□□□ -0.51
SFSWAP-208ENST00000539506 ACSM5Q6NUN0 579 aa11.84□□□□□ -0.51
SFSWAP-208ENST00000539506 IKBIPQ70UQ0 350 aa11.84□□□□□ -0.51
SFSWAP-208ENST00000539506 FAM20CQ8IXL6 584 aa11.84□□□□□ -0.51
SFSWAP-208ENST00000539506 LINC01555Q8NAE3 123 aa11.84□□□□□ -0.51
SFSWAP-208ENST00000539506 SIMC1Q8NDZ2 872 aa11.84□□□□□ -0.51
SFSWAP-208ENST00000539506 OR8D1Q8WZ84 308 aa11.84□□□□□ -0.51
SFSWAP-208ENST00000539506 RHBGQ9H310 441 aa11.84□□□□□ -0.51
SFSWAP-208ENST00000539506 NARFLQ9H6Q4 476 aa11.84□□□□□ -0.51
SFSWAP-208ENST00000539506 STUB1Q9UNE7 303 aa11.84□□□□□ -0.51
SFSWAP-208ENST00000539506 ANGPT4Q9Y264 503 aa11.84□□□□□ -0.51
SFSWAP-208ENST00000539506 SPEF1Q9Y4P9 236 aa11.84□□□□□ -0.51
SFSWAP-208ENST00000539506 CD8B2A6NJW9 211 aa11.84□□□□□ -0.51
SFSWAP-208ENST00000539506 ZNF670-ZNF695F2Z2N8 137 aa11.84□□□□□ -0.51
SFSWAP-208ENST00000539506 SLC9A3R1O14745 358 aaPredicted RBP11.84□□□□□ -0.51
SFSWAP-208ENST00000539506 LATO43561 262 aa11.84□□□□□ -0.51
SFSWAP-208ENST00000539506 PRKRAO75569 313 aaKnown RBP11.84□□□□□ -0.51
SFSWAP-208ENST00000539506 CD8BP10966 210 aa11.84□□□□□ -0.51
SFSWAP-208ENST00000539506 RPL3P39023 403 aaKnown RBP11.84□□□□□ -0.51
SFSWAP-208ENST00000539506 ETV6P41212 452 aa11.84□□□□□ -0.51
SFSWAP-208ENST00000539506 RNF144AP50876 292 aaPredicted RBP11.84□□□□□ -0.51
SFSWAP-208ENST00000539506 MANFP55145 182 aaKnown RBP11.84□□□□□ -0.51
SFSWAP-208ENST00000539506 ELAVL3Q14576 367 aaKnown RBP11.84□□□□□ -0.51
SFSWAP-208ENST00000539506 RAD51AP1Q96B01 352 aa11.84□□□□□ -0.51
SFSWAP-208ENST00000539506 ARMC5Q96C12 935 aa11.84□□□□□ -0.51
SFSWAP-208ENST00000539506 GDF15Q99988 308 aa11.84□□□□□ -0.51
SFSWAP-208ENST00000539506 MACROD1Q9BQ69 325 aa11.84□□□□□ -0.51
SFSWAP-208ENST00000539506 NLNQ9BYT8 704 aa11.84□□□□□ -0.51
SFSWAP-208ENST00000539506 QRSL1Q9H0R6 528 aaKnown RBP11.84□□□□□ -0.51
SFSWAP-208ENST00000539506 MN1Q10571 1320 aaPredicted RBP11.84□□□□□ -0.51
SFSWAP-208ENST00000539506 IGKV1-8A0A0C4DH67 115 aa11.84□□□□□ -0.51
SFSWAP-208ENST00000539506 EDDM13A0A1B0GTR0 161 aa11.84□□□□□ -0.51
SFSWAP-208ENST00000539506 PCCBP05166 539 aa11.84□□□□□ -0.51
SFSWAP-208ENST00000539506 PEPDP12955 493 aa11.84□□□□□ -0.51
SFSWAP-208ENST00000539506 MYOGP15173 224 aa11.84□□□□□ -0.51
SFSWAP-208ENST00000539506 GLYR1Q49A26 553 aaPredicted RBP11.84□□□□□ -0.51
SFSWAP-208ENST00000539506 TMEM52BQ4KMG9 183 aa11.84□□□□□ -0.51
SFSWAP-208ENST00000539506 FAM78AQ5JUQ0 283 aa11.84□□□□□ -0.51
SFSWAP-208ENST00000539506 PXDC1Q5TGL8 231 aa11.84□□□□□ -0.51
SFSWAP-208ENST00000539506 C6orf120Q7Z4R8 191 aa11.84□□□□□ -0.51
SFSWAP-208ENST00000539506 AMZ2Q86W34 360 aa11.84□□□□□ -0.51
SFSWAP-208ENST00000539506 OR5D16Q8NGK9 328 aa11.84□□□□□ -0.51
SFSWAP-208ENST00000539506 OR5K2Q8NHB8 316 aa11.84□□□□□ -0.51
SFSWAP-208ENST00000539506 WFIKKN2Q8TEU8 576 aa11.84□□□□□ -0.51
SFSWAP-208ENST00000539506 EXOSC8Q96B26 276 aaKnown RBP11.84□□□□□ -0.51
SFSWAP-208ENST00000539506 ARSGQ96EG1 525 aa11.84□□□□□ -0.51
SFSWAP-208ENST00000539506 GPA33Q99795 319 aa11.84□□□□□ -0.51
SFSWAP-208ENST00000539506 KATNB1Q9BVA0 655 aa11.84□□□□□ -0.51
SFSWAP-208ENST00000539506 HDHD2Q9H0R4 259 aa11.84□□□□□ -0.51
SFSWAP-208ENST00000539506 C11orf49Q9H6J7 331 aa11.84□□□□□ -0.51
SFSWAP-208ENST00000539506 EGLN3Q9H6Z9 239 aa11.84□□□□□ -0.51
SFSWAP-208ENST00000539506 EVA1BQ9NVM1 165 aa11.84□□□□□ -0.51
SFSWAP-208ENST00000539506 NUP210Q8TEM1 1887 aaPredicted RBP11.84□□□□□ -0.51
SFSWAP-208ENST00000539506 KIF26AQ9ULI4 1882 aaPredicted RBP11.83□□□□□ -0.52
SFSWAP-208ENST00000539506 A0A075B6Q4 140 aa11.83□□□□□ -0.52
SFSWAP-208ENST00000539506 IGLON5A6NGN9 336 aa11.83□□□□□ -0.52
SFSWAP-208ENST00000539506 FAM25AB3EWG3 89 aa11.83□□□□□ -0.52
SFSWAP-208ENST00000539506 FAM25CB3EWG5 89 aa11.83□□□□□ -0.52
SFSWAP-208ENST00000539506 FAM25GB3EWG6 89 aa11.83□□□□□ -0.52
SFSWAP-208ENST00000539506 C5orf58C9J3I9 102 aa11.83□□□□□ -0.52
SFSWAP-208ENST00000539506 HYAL3O43820 417 aaPredicted RBP11.83□□□□□ -0.52
SFSWAP-208ENST00000539506 VEGFDO43915 354 aa11.83□□□□□ -0.52
SFSWAP-208ENST00000539506 ADH1CP00326 375 aa11.83□□□□□ -0.52
SFSWAP-208ENST00000539506 LALBAP00709 142 aa11.83□□□□□ -0.52
SFSWAP-208ENST00000539506 OR12D1P0DN82 309 aa11.83□□□□□ -0.52
SFSWAP-208ENST00000539506 HOXB3P14651 431 aaPredicted RBP11.83□□□□□ -0.52
SFSWAP-208ENST00000539506 ENDOUP21128 410 aaKnown RBP11.83□□□□□ -0.52
SFSWAP-208ENST00000539506 KELP23276 732 aa11.83□□□□□ -0.52
SFSWAP-208ENST00000539506 SSTR2P30874 369 aa11.83□□□□□ -0.52
SFSWAP-208ENST00000539506 SMSP52788 366 aa11.83□□□□□ -0.52
SFSWAP-208ENST00000539506 FAM205BPQ63HN1 556 aa11.83□□□□□ -0.52
SFSWAP-208ENST00000539506 OR8H3Q8N146 312 aa11.83□□□□□ -0.52
SFSWAP-208ENST00000539506 ZNF514Q96K75 400 aaPredicted RBP11.83□□□□□ -0.52
SFSWAP-208ENST00000539506 C3orf14Q9HBI5 128 aa11.83□□□□□ -0.52
SFSWAP-208ENST00000539506 LSM2Q9Y333 95 aaKnown RBP11.83□□□□□ -0.52
SFSWAP-208ENST00000539506 SHISA3A0PJX4 238 aa11.83□□□□□ -0.52
SFSWAP-208ENST00000539506 ARHGEF9O43307 516 aa11.83□□□□□ -0.52
SFSWAP-208ENST00000539506 DDX5P17844 614 aaKnown RBP11.83□□□□□ -0.52
SFSWAP-208ENST00000539506 ENPP1P22413 925 aa11.83□□□□□ -0.52
SFSWAP-208ENST00000539506 FABP5Q01469 135 aa11.83□□□□□ -0.52
SFSWAP-208ENST00000539506 GINS1Q14691 196 aa11.83□□□□□ -0.52
SFSWAP-208ENST00000539506 HEPACAMQ14CZ8 416 aa11.83□□□□□ -0.52
SFSWAP-208ENST00000539506 SYPL1Q16563 259 aa11.83□□□□□ -0.52
SFSWAP-208ENST00000539506 DCST1Q5T197 706 aa11.83□□□□□ -0.52
SFSWAP-208ENST00000539506 C17orf64Q86WR6 236 aa11.83□□□□□ -0.52
SFSWAP-208ENST00000539506 DCUN1D3Q8IWE4 304 aa11.83□□□□□ -0.52
SFSWAP-208ENST00000539506 KRT78Q8N1N4 520 aa11.83□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms