RNA–Protein interactions for RNA: ENST00000535906.1

VPS33B-202, Transcript of VPS33B, late endosome and lysosome associated, humanhuman

TSL 2 BASIC

Gene VPS33B, Length 2,420 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33B-202ENST00000535906 MOAP1Q96BY2 351 aa12.56□□□□□ -0.4
VPS33B-202ENST00000535906 TMEM74BQ9NUR3 256 aa12.56□□□□□ -0.4
VPS33B-202ENST00000535906 GIMAP4Q9NUV9 329 aa12.56□□□□□ -0.4
VPS33B-202ENST00000535906 KCMF1Q9P0J7 381 aa12.56□□□□□ -0.4
VPS33B-202ENST00000535906 MMP17Q9ULZ9 603 aa12.56□□□□□ -0.4
VPS33B-202ENST00000535906 MGAT4BQ9UQ53 548 aa12.56□□□□□ -0.4
VPS33B-202ENST00000535906 KLK4Q9Y5K2 254 aa12.56□□□□□ -0.4
VPS33B-202ENST00000535906 GIMAP1-GIMAP5A0A087WTJ2 511 aa12.56□□□□□ -0.4
VPS33B-202ENST00000535906 LOC105369274A0A096LPK9 316 aa12.56□□□□□ -0.4
VPS33B-202ENST00000535906 LOC102723532A0A0G2JNH3 316 aa12.56□□□□□ -0.4
VPS33B-202ENST00000535906 A0A0G2JPF8 293 aa12.56□□□□□ -0.4
VPS33B-202ENST00000535906 HNRNPCL2B2RXH8 293 aa12.56□□□□□ -0.4
VPS33B-202ENST00000535906 HNRNPCL3B7ZW38 293 aa12.56□□□□□ -0.4
VPS33B-202ENST00000535906 TAF4O00268 1085 aa12.56□□□□□ -0.4
VPS33B-202ENST00000535906 UGT2B17O75795 530 aa12.56□□□□□ -0.4
VPS33B-202ENST00000535906 SEMA4FO95754 770 aa12.56□□□□□ -0.4
VPS33B-202ENST00000535906 HNRNPCL4P0DMR1 293 aa12.56□□□□□ -0.4
VPS33B-202ENST00000535906 SMIM10L1P0DMW3 83 aa12.56□□□□□ -0.4
VPS33B-202ENST00000535906 BUD31P41223 144 aaPredicted RBP12.56□□□□□ -0.4
VPS33B-202ENST00000535906 MAGEA8P43361 318 aa12.56□□□□□ -0.4
VPS33B-202ENST00000535906 ANXA11P50995 505 aaKnown RBP12.56□□□□□ -0.4
VPS33B-202ENST00000535906 RPS3AP61247 264 aaKnown RBP12.56□□□□□ -0.4
VPS33B-202ENST00000535906 TARDBPQ13148 414 aaKnown RBP eCLIP12.56□□□□□ -0.4
VPS33B-202ENST00000535906 ILKQ13418 452 aa12.56□□□□□ -0.4
VPS33B-202ENST00000535906 FIGLAQ6QHK4 219 aa12.56□□□□□ -0.4
VPS33B-202ENST00000535906 FAM92BQ6ZTR7 304 aa12.56□□□□□ -0.4
VPS33B-202ENST00000535906 OR4N4Q8N0Y3 316 aa12.56□□□□□ -0.4
VPS33B-202ENST00000535906 SHISA5Q8N114 240 aa12.56□□□□□ -0.4
VPS33B-202ENST00000535906 FAM46DQ8NEK8 389 aa12.56□□□□□ -0.4
VPS33B-202ENST00000535906 COL26A1Q96A83 441 aa12.56□□□□□ -0.4
VPS33B-202ENST00000535906 GIMAP5Q96F15 307 aa12.56□□□□□ -0.4
VPS33B-202ENST00000535906 SMIM10Q96HG1 83 aa12.56□□□□□ -0.4
VPS33B-202ENST00000535906 SPATA5L1Q9BVQ7 753 aa12.56□□□□□ -0.4
VPS33B-202ENST00000535906 OR51E2Q9H255 320 aa12.56□□□□□ -0.4
VPS33B-202ENST00000535906 SLC38A1Q9H2H9 487 aa12.56□□□□□ -0.4
VPS33B-202ENST00000535906 C3orf14Q9HBI5 128 aa12.56□□□□□ -0.4
VPS33B-202ENST00000535906 C11orf16Q9NQ32 467 aa12.56□□□□□ -0.4
VPS33B-202ENST00000535906 CTPS2Q9NRF8 586 aa12.56□□□□□ -0.4
VPS33B-202ENST00000535906 MAN2C1Q9NTJ4 1040 aa12.56□□□□□ -0.4
VPS33B-202ENST00000535906 CLN6Q9NWW5 311 aa12.56□□□□□ -0.4
VPS33B-202ENST00000535906 ACTR10Q9NZ32 417 aa12.56□□□□□ -0.4
VPS33B-202ENST00000535906 CCDC59Q9P031 241 aaKnown RBP12.56□□□□□ -0.4
VPS33B-202ENST00000535906 SLC9A8Q9Y2E8 581 aa12.56□□□□□ -0.4
VPS33B-202ENST00000535906 IFT52Q9Y366 437 aa12.56□□□□□ -0.4
VPS33B-202ENST00000535906 LOC100506127A0A0U1RQW1 187 aa12.55□□□□□ -0.4
VPS33B-202ENST00000535906 A0A1W2PRQ8 180 aa12.55□□□□□ -0.4
VPS33B-202ENST00000535906 AGAP5A6NIR3 686 aa12.55□□□□□ -0.4
VPS33B-202ENST00000535906 H3BQ06 376 aaPredicted RBP12.55□□□□□ -0.4
VPS33B-202ENST00000535906 DSCR3O14972 297 aa12.55□□□□□ -0.4
VPS33B-202ENST00000535906 IGHV4-34P06331 123 aa12.55□□□□□ -0.4
VPS33B-202ENST00000535906 ADRA2AP08913 450 aa12.55□□□□□ -0.4
VPS33B-202ENST00000535906 DBTP11182 482 aaKnown RBP12.55□□□□□ -0.4
VPS33B-202ENST00000535906 ILF3Q12906 894 aaKnown RBP eCLIP12.55□□□□□ -0.4
VPS33B-202ENST00000535906 CBX3Q13185 183 aa12.55□□□□□ -0.4
VPS33B-202ENST00000535906 DNASE1L3Q13609 305 aa12.55□□□□□ -0.4
VPS33B-202ENST00000535906 RUNX2Q13950 521 aa12.55□□□□□ -0.4
VPS33B-202ENST00000535906 ZNF542PQ5EBM4 170 aa12.55□□□□□ -0.4
VPS33B-202ENST00000535906 C6orf132Q5T0Z8 1188 aa12.55□□□□□ -0.4
VPS33B-202ENST00000535906 PODNL1Q6PEZ8 512 aa12.55□□□□□ -0.4
VPS33B-202ENST00000535906 TRIM48Q8IWZ4 208 aa12.55□□□□□ -0.4
VPS33B-202ENST00000535906 OR4N5Q8IXE1 308 aa12.55□□□□□ -0.4
VPS33B-202ENST00000535906 SIMC1Q8NDZ2 872 aa12.55□□□□□ -0.4
VPS33B-202ENST00000535906 IL4I1Q96RQ9 567 aa12.55□□□□□ -0.4
VPS33B-202ENST00000535906 ANKMY1Q9P2S6 941 aa12.55□□□□□ -0.4
VPS33B-202ENST00000535906 PILRAQ9UKJ1 303 aa12.55□□□□□ -0.4
VPS33B-202ENST00000535906 UPK1BO75841 260 aa12.54□□□□□ -0.4
VPS33B-202ENST00000535906 CELA2BP08218 269 aaPredicted RBP12.54□□□□□ -0.4
VPS33B-202ENST00000535906 PVRP15151 417 aa12.54□□□□□ -0.4
VPS33B-202ENST00000535906 CPN2P22792 545 aa12.54□□□□□ -0.4
VPS33B-202ENST00000535906 LSSP48449 732 aa12.54□□□□□ -0.4
VPS33B-202ENST00000535906 SMIM11AP58511 58 aa12.54□□□□□ -0.4
VPS33B-202ENST00000535906 TNFRSF17Q02223 184 aa12.54□□□□□ -0.4
VPS33B-202ENST00000535906 CHRNEQ04844 493 aa12.54□□□□□ -0.4
VPS33B-202ENST00000535906 GNA13Q14344 377 aa12.54□□□□□ -0.4
VPS33B-202ENST00000535906 SUZ12Q15022 739 aaKnown RBP12.54□□□□□ -0.4
VPS33B-202ENST00000535906 AGAP7PQ5VUJ5 663 aa12.54□□□□□ -0.4
VPS33B-202ENST00000535906 FAM111BQ6SJ93 734 aa12.54□□□□□ -0.4
VPS33B-202ENST00000535906 OR7G2Q8NG99 324 aa12.54□□□□□ -0.4
VPS33B-202ENST00000535906 FNDC11Q9BVV2 318 aa12.54□□□□□ -0.4
VPS33B-202ENST00000535906 PRR14Q9BWN1 585 aa12.54□□□□□ -0.4
VPS33B-202ENST00000535906 CDADC1Q9BWV3 514 aa12.54□□□□□ -0.4
VPS33B-202ENST00000535906 C6orf62Q9GZU0 229 aaPredicted RBP12.54□□□□□ -0.4
VPS33B-202ENST00000535906 POLR2J3Q9H1A7 115 aaKnown RBP12.54□□□□□ -0.4
VPS33B-202ENST00000535906 ZNF576Q9H609 170 aa12.54□□□□□ -0.4
VPS33B-202ENST00000535906 HS3ST3A1Q9Y663 406 aa12.54□□□□□ -0.4
VPS33B-202ENST00000535906 ISPDA4D126 451 aa12.54□□□□□ -0.4
VPS33B-202ENST00000535906 SAGE2PA6NJ88 616 aa12.54□□□□□ -0.4
VPS33B-202ENST00000535906 C10orf142B7Z368 130 aa12.54□□□□□ -0.4
VPS33B-202ENST00000535906 H3BN98 237 aa12.54□□□□□ -0.4
VPS33B-202ENST00000535906 TP53P04637 393 aaPredicted RBP12.54□□□□□ -0.4
VPS33B-202ENST00000535906 HSMCR30P0CW71 290 aa12.54□□□□□ -0.4
VPS33B-202ENST00000535906 PIPP12273 146 aaPredicted RBP12.54□□□□□ -0.4
VPS33B-202ENST00000535906 SLC15A1P46059 708 aa12.54□□□□□ -0.4
VPS33B-202ENST00000535906 XKP51811 444 aa12.54□□□□□ -0.4
VPS33B-202ENST00000535906 UGT2B15P54855 530 aa12.54□□□□□ -0.4
VPS33B-202ENST00000535906 SIM1P81133 766 aaPredicted RBP12.54□□□□□ -0.4
VPS33B-202ENST00000535906 INAVAQ3KP66 663 aa12.54□□□□□ -0.4
VPS33B-202ENST00000535906 C19orf48Q6RUI8 117 aa12.54□□□□□ -0.4
VPS33B-202ENST00000535906 VRK2Q86Y07 508 aa12.54□□□□□ -0.4
VPS33B-202ENST00000535906 TMEFF1Q8IYR6 380 aa12.54□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms