RNA–Protein interactions for RNA: ENST00000534442.5

ECHDC1-223, Transcript of ethylmalonyl-CoA decarboxylase 1, human

TSL 5

Gene ECHDC1, Length 577 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ECHDC1-223	ENST00000534442	NUP54	Q7Z3B4	507 aa		4.03	□□□□□ -1.76
ECHDC1-223	ENST00000534442	SPATA21	Q7Z572	469 aa		4.03	□□□□□ -1.76
ECHDC1-223	ENST00000534442	ZNF589	Q86UQ0	364 aa	Predicted RBP	4.03	□□□□□ -1.76
ECHDC1-223	ENST00000534442	COMMD2	Q86X83	199 aa		4.03	□□□□□ -1.76
ECHDC1-223	ENST00000534442	C4orf19	Q8IY42	314 aa		4.03	□□□□□ -1.76
ECHDC1-223	ENST00000534442	NUP93	Q8N1F7	819 aa		4.03	□□□□□ -1.76
ECHDC1-223	ENST00000534442	CRYBG2	Q8N1P7	616 aa		4.03	□□□□□ -1.76
ECHDC1-223	ENST00000534442	ARHGAP24	Q8N264	748 aa		4.03	□□□□□ -1.76
ECHDC1-223	ENST00000534442	LILRB1	Q8NHL6	650 aa	Predicted RBP	4.03	□□□□□ -1.76
ECHDC1-223	ENST00000534442	FGFBP3	Q8TAT2	258 aa		4.03	□□□□□ -1.76
ECHDC1-223	ENST00000534442	ELP5	Q8TE02	316 aa		4.03	□□□□□ -1.76
ECHDC1-223	ENST00000534442	RNF128	Q8TEB7	428 aa		4.03	□□□□□ -1.76
ECHDC1-223	ENST00000534442	SSMEM1	Q8WWF3	244 aa		4.03	□□□□□ -1.76
ECHDC1-223	ENST00000534442	SYN2	Q92777	582 aa	Predicted RBP	4.03	□□□□□ -1.76
ECHDC1-223	ENST00000534442	PTP4A1	Q93096	173 aa		4.03	□□□□□ -1.76
ECHDC1-223	ENST00000534442	MOB3A	Q96BX8	217 aa		4.03	□□□□□ -1.76
ECHDC1-223	ENST00000534442	BMF	Q96LC9	184 aa		4.03	□□□□□ -1.76
ECHDC1-223	ENST00000534442	NEURL2	Q9BR09	285 aa		4.03	□□□□□ -1.76
ECHDC1-223	ENST00000534442	NTPCR	Q9BSD7	190 aa	Known RBP	4.03	□□□□□ -1.76
ECHDC1-223	ENST00000534442	VN1R1	Q9GZP7	353 aa		4.03	□□□□□ -1.76
ECHDC1-223	ENST00000534442	POLR3F	Q9H1D9	316 aa	Predicted RBP	4.03	□□□□□ -1.76
ECHDC1-223	ENST00000534442	LRRC4	Q9HBW1	653 aa		4.03	□□□□□ -1.76
ECHDC1-223	ENST00000534442	C6orf50	Q9HD87	102 aa		4.03	□□□□□ -1.76
ECHDC1-223	ENST00000534442	LHX9	Q9NQ69	397 aa		4.03	□□□□□ -1.76
ECHDC1-223	ENST00000534442	KLHL1	Q9NR64	748 aa		4.03	□□□□□ -1.76
ECHDC1-223	ENST00000534442	RNF7	Q9UBF6	113 aa		4.03	□□□□□ -1.76
ECHDC1-223	ENST00000534442	SUN2	Q9UH99	717 aa		4.03	□□□□□ -1.76
ECHDC1-223	ENST00000534442	LNPEP	Q9UIQ6	1025 aa		4.03	□□□□□ -1.76
ECHDC1-223	ENST00000534442	KLHL21	Q9UJP4	597 aa		4.03	□□□□□ -1.76
ECHDC1-223	ENST00000534442	CPSF3	Q9UKF6	684 aa	Known RBP	4.03	□□□□□ -1.76
ECHDC1-223	ENST00000534442	CLEC4E	Q9ULY5	219 aa		4.03	□□□□□ -1.76
ECHDC1-223	ENST00000534442	SNX7	Q9UNH6	387 aa		4.03	□□□□□ -1.76
ECHDC1-223	ENST00000534442	VDAC3	Q9Y277	283 aa		4.03	□□□□□ -1.76
ECHDC1-223	ENST00000534442	SCN2A	Q99250	2005 aa		4.02	□□□□□ -1.77
ECHDC1-223	ENST00000534442		A0A0D9SFI3	127 aa		4.02	□□□□□ -1.77
ECHDC1-223	ENST00000534442		A0A1W2PPK0	400 aa		4.02	□□□□□ -1.77
ECHDC1-223	ENST00000534442		A0A1W2PPR1	153 aa		4.02	□□□□□ -1.77
ECHDC1-223	ENST00000534442	C5orf52	A6NGY3	159 aa		4.02	□□□□□ -1.77
ECHDC1-223	ENST00000534442		A8MU76	341 aa		4.02	□□□□□ -1.77
ECHDC1-223	ENST00000534442	HNRNPCL2	B2RXH8	293 aa		4.02	□□□□□ -1.77
ECHDC1-223	ENST00000534442	STX6	O43752	255 aa		4.02	□□□□□ -1.77
ECHDC1-223	ENST00000534442	STATH	P02808	62 aa		4.02	□□□□□ -1.77
ECHDC1-223	ENST00000534442	TRIM49	P0CI25	452 aa		4.02	□□□□□ -1.77
ECHDC1-223	ENST00000534442	TRIM49C	P0CI26	452 aa		4.02	□□□□□ -1.77
ECHDC1-223	ENST00000534442	SCP2	P22307	547 aa		4.02	□□□□□ -1.77
ECHDC1-223	ENST00000534442	CD1C	P29017	333 aa		4.02	□□□□□ -1.77
ECHDC1-223	ENST00000534442	TIA1	P31483	386 aa	Known RBP eCLIP	4.02	□□□□□ -1.77
ECHDC1-223	ENST00000534442	RPS15	P62841	145 aa	Known RBP	4.02	□□□□□ -1.77
ECHDC1-223	ENST00000534442	EEF1A1	P68104	462 aa	Known RBP	4.02	□□□□□ -1.77
ECHDC1-223	ENST00000534442	KIF5A	Q12840	1032 aa		4.02	□□□□□ -1.77
ECHDC1-223	ENST00000534442	TRDN	Q13061	729 aa		4.02	□□□□□ -1.77
ECHDC1-223	ENST00000534442	CLPP	Q16740	277 aa	Predicted RBP	4.02	□□□□□ -1.77
ECHDC1-223	ENST00000534442	ZNF674	Q2M3X9	581 aa		4.02	□□□□□ -1.77
ECHDC1-223	ENST00000534442	TCTE1	Q5JU00	501 aa		4.02	□□□□□ -1.77
ECHDC1-223	ENST00000534442	CASC10	Q5T4H9	136 aa		4.02	□□□□□ -1.77
ECHDC1-223	ENST00000534442	NDUFAF5	Q5TEU4	345 aa		4.02	□□□□□ -1.77
ECHDC1-223	ENST00000534442	EEF1A1P5	Q5VTE0	462 aa		4.02	□□□□□ -1.77
ECHDC1-223	ENST00000534442	AWAT2	Q6E213	333 aa		4.02	□□□□□ -1.77
ECHDC1-223	ENST00000534442	IYD	Q6PHW0	289 aa		4.02	□□□□□ -1.77
ECHDC1-223	ENST00000534442	TMEM182	Q6ZP80	229 aa	Predicted RBP	4.02	□□□□□ -1.77
ECHDC1-223	ENST00000534442		Q6ZPB1	254 aa	Predicted RBP	4.02	□□□□□ -1.77
ECHDC1-223	ENST00000534442	TIGD4	Q8IY51	512 aa		4.02	□□□□□ -1.77
ECHDC1-223	ENST00000534442	CARNMT1	Q8N4J0	409 aa		4.02	□□□□□ -1.77
ECHDC1-223	ENST00000534442	IQCF1	Q8N6M8	205 aa		4.02	□□□□□ -1.77
ECHDC1-223	ENST00000534442	ZNF611	Q8N823	705 aa		4.02	□□□□□ -1.77
ECHDC1-223	ENST00000534442	EXOC6	Q8TAG9	804 aa		4.02	□□□□□ -1.77
ECHDC1-223	ENST00000534442	TRAF3IP1	Q8TDR0	691 aa	Predicted RBP	4.02	□□□□□ -1.77
ECHDC1-223	ENST00000534442	HEXDC	Q8WVB3	486 aa		4.02	□□□□□ -1.77
ECHDC1-223	ENST00000534442	NSMAF	Q92636	917 aa		4.02	□□□□□ -1.77
ECHDC1-223	ENST00000534442	ST6GALNAC6	Q969X2	333 aa		4.02	□□□□□ -1.77
ECHDC1-223	ENST00000534442	DHX58	Q96C10	678 aa		4.02	□□□□□ -1.77
ECHDC1-223	ENST00000534442	LINGO1	Q96FE5	620 aa		4.02	□□□□□ -1.77
ECHDC1-223	ENST00000534442	BICD1	Q96G01	975 aa		4.02	□□□□□ -1.77
ECHDC1-223	ENST00000534442	CELF6	Q96J87	481 aa	Known RBP	4.02	□□□□□ -1.77
ECHDC1-223	ENST00000534442	LXN	Q9BS40	222 aa		4.02	□□□□□ -1.77
ECHDC1-223	ENST00000534442	INPP5K	Q9BT40	448 aa		4.02	□□□□□ -1.77
ECHDC1-223	ENST00000534442	FUT8	Q9BYC5	575 aa		4.02	□□□□□ -1.77
ECHDC1-223	ENST00000534442	DNAI2	Q9GZS0	605 aa		4.02	□□□□□ -1.77
ECHDC1-223	ENST00000534442	FN3K	Q9H479	309 aa		4.02	□□□□□ -1.77
ECHDC1-223	ENST00000534442	DNAJC4	Q9NNZ3	241 aa		4.02	□□□□□ -1.77
ECHDC1-223	ENST00000534442	SERINC1	Q9NRX5	453 aa		4.02	□□□□□ -1.77
ECHDC1-223	ENST00000534442	WRAP73	Q9P2S5	460 aa	Predicted RBP	4.02	□□□□□ -1.77
ECHDC1-223	ENST00000534442	RNF6	Q9Y252	685 aa		4.02	□□□□□ -1.77
ECHDC1-223	ENST00000534442	ZNF835	Q9Y2P0	537 aa		4.02	□□□□□ -1.77
ECHDC1-223	ENST00000534442	MAGEA13P	A6NCF6	341 aa		4.01	□□□□□ -1.77
ECHDC1-223	ENST00000534442	PRR32	B1ATL7	298 aa		4.01	□□□□□ -1.77
ECHDC1-223	ENST00000534442	NUDT21	O43809	227 aa	Known RBP	4.01	□□□□□ -1.77
ECHDC1-223	ENST00000534442	KLHL41	O60662	606 aa		4.01	□□□□□ -1.77
ECHDC1-223	ENST00000534442	IL1B	P01584	269 aa		4.01	□□□□□ -1.77
ECHDC1-223	ENST00000534442	EDN1	P05305	212 aa		4.01	□□□□□ -1.77
ECHDC1-223	ENST00000534442	H1F0	P07305	194 aa	Known RBP	4.01	□□□□□ -1.77
ECHDC1-223	ENST00000534442	SP1	P08047	785 aa		4.01	□□□□□ -1.77
ECHDC1-223	ENST00000534442	CDH1	P12830	882 aa		4.01	□□□□□ -1.77
ECHDC1-223	ENST00000534442	CYP3A5	P20815	502 aa		4.01	□□□□□ -1.77
ECHDC1-223	ENST00000534442	ACAT1	P24752	427 aa	Known RBP	4.01	□□□□□ -1.77
ECHDC1-223	ENST00000534442	CHRNA3	P32297	505 aa		4.01	□□□□□ -1.77
ECHDC1-223	ENST00000534442	AHR	P35869	848 aa		4.01	□□□□□ -1.77
ECHDC1-223	ENST00000534442	KCNJ1	P48048	391 aa		4.01	□□□□□ -1.77
ECHDC1-223	ENST00000534442	RPL24	P83731	157 aa	Known RBP	4.01	□□□□□ -1.77
ECHDC1-223	ENST00000534442	PPP2R5C	Q13362	524 aa		4.01	□□□□□ -1.77

Retrieved 100 of 20,778 RNA–protein pairs in 72.2 ms