RNA–Protein interactions for RNA: ENST00000529540.5

NR1H3-231, Transcript of nuclear receptor subfamily 1 group H member 3, human

TSL 2

Gene NR1H3, Length 1,673 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NR1H3-231	ENST00000529540	LAMA1	P25391	3075 aa		13.72	□□□□□ -0.21
NR1H3-231	ENST00000529540	DNAH14	Q0VDD8	3507 aa		13.72	□□□□□ -0.21
NR1H3-231	ENST00000529540	IGHV5-51	A0A0C4DH38	117 aa		13.72	□□□□□ -0.21
NR1H3-231	ENST00000529540	FEZF1	A0PJY2	475 aa		13.72	□□□□□ -0.21
NR1H3-231	ENST00000529540	FAM47E-STBD1	D6RA91	191 aa		13.72	□□□□□ -0.21
NR1H3-231	ENST00000529540	hCG_2039718	K7EN88	272 aa		13.72	□□□□□ -0.21
NR1H3-231	ENST00000529540	CDK1	P06493	297 aa		13.72	□□□□□ -0.21
NR1H3-231	ENST00000529540	PVR	P15151	417 aa		13.72	□□□□□ -0.21
NR1H3-231	ENST00000529540	SDHB	P21912	280 aa		13.72	□□□□□ -0.21
NR1H3-231	ENST00000529540	GADD45A	P24522	165 aa		13.72	□□□□□ -0.21
NR1H3-231	ENST00000529540	TGFBR1	P36897	503 aa		13.72	□□□□□ -0.21
NR1H3-231	ENST00000529540	BCL6	P41182	706 aa		13.72	□□□□□ -0.21
NR1H3-231	ENST00000529540	KIR3DL1	P43629	444 aa		13.72	□□□□□ -0.21
NR1H3-231	ENST00000529540	TSFM	P43897	325 aa	Known RBP	13.72	□□□□□ -0.21
NR1H3-231	ENST00000529540	C21orf58	P58505	322 aa		13.72	□□□□□ -0.21
NR1H3-231	ENST00000529540	SKP1	P63208	163 aa		13.72	□□□□□ -0.21
NR1H3-231	ENST00000529540	CFHR1	Q03591	330 aa		13.72	□□□□□ -0.21
NR1H3-231	ENST00000529540	SLC13A2	Q13183	592 aa		13.72	□□□□□ -0.21
NR1H3-231	ENST00000529540	DDX39B	Q13838	428 aa	Known RBP	13.72	□□□□□ -0.21
NR1H3-231	ENST00000529540	SPIN4	Q56A73	249 aa		13.72	□□□□□ -0.21
NR1H3-231	ENST00000529540	FBXO42	Q6P3S6	717 aa		13.72	□□□□□ -0.21
NR1H3-231	ENST00000529540	ASPG	Q86U10	573 aa		13.72	□□□□□ -0.21
NR1H3-231	ENST00000529540	ANKRD46	Q86W74	232 aa		13.72	□□□□□ -0.21
NR1H3-231	ENST00000529540	D2HGDH	Q8N465	521 aa		13.72	□□□□□ -0.21
NR1H3-231	ENST00000529540	DNAJC22	Q8N4W6	341 aa		13.72	□□□□□ -0.21
NR1H3-231	ENST00000529540	ANKRD53	Q8N9V6	530 aa		13.72	□□□□□ -0.21
NR1H3-231	ENST00000529540	ZNF740	Q8NDX6	193 aa		13.72	□□□□□ -0.21
NR1H3-231	ENST00000529540	MTERF1	Q99551	399 aa	Known RBP	13.72	□□□□□ -0.21
NR1H3-231	ENST00000529540	SIRT5	Q9NXA8	310 aa		13.72	□□□□□ -0.21
NR1H3-231	ENST00000529540	RAPGEFL1	Q9UHV5	662 aa		13.72	□□□□□ -0.21
NR1H3-231	ENST00000529540	PEX16	Q9Y5Y5	336 aa		13.72	□□□□□ -0.21
NR1H3-231	ENST00000529540	DMD	P11532	3685 aa		13.71	□□□□□ -0.21
NR1H3-231	ENST00000529540	GOLGA4	Q13439	2230 aa	Known RBP	13.71	□□□□□ -0.21
NR1H3-231	ENST00000529540	IGHV5-10-1	A0A0J9YXX1	117 aa		13.71	□□□□□ -0.21
NR1H3-231	ENST00000529540	MAGEB17	A8MXT2	336 aa		13.71	□□□□□ -0.21
NR1H3-231	ENST00000529540	CLIC1	O00299	241 aa		13.71	□□□□□ -0.21
NR1H3-231	ENST00000529540	DSCR3	O14972	297 aa		13.71	□□□□□ -0.21
NR1H3-231	ENST00000529540	TBX1	O43435	398 aa		13.71	□□□□□ -0.21
NR1H3-231	ENST00000529540	GFRA3	O60609	400 aa		13.71	□□□□□ -0.21
NR1H3-231	ENST00000529540	DLGAP3	O95886	979 aa		13.71	□□□□□ -0.21
NR1H3-231	ENST00000529540	ZNF10	P21506	573 aa	Predicted RBP	13.71	□□□□□ -0.21
NR1H3-231	ENST00000529540	TACR1	P25103	407 aa		13.71	□□□□□ -0.21
NR1H3-231	ENST00000529540	EPHA2	P29317	976 aa		13.71	□□□□□ -0.21
NR1H3-231	ENST00000529540	ACY1	Q03154	408 aa		13.71	□□□□□ -0.21
NR1H3-231	ENST00000529540	SRSF11	Q05519	484 aa	Known RBP	13.71	□□□□□ -0.21
NR1H3-231	ENST00000529540	TIGD6	Q17RP2	521 aa		13.71	□□□□□ -0.21
NR1H3-231	ENST00000529540	BPHL	Q86WA6	291 aa	Predicted RBP	13.71	□□□□□ -0.21
NR1H3-231	ENST00000529540	P3H2	Q8IVL5	708 aa		13.71	□□□□□ -0.21
NR1H3-231	ENST00000529540	NT5C	Q8TCD5	201 aa		13.71	□□□□□ -0.21
NR1H3-231	ENST00000529540	HTRA1	Q92743	480 aa		13.71	□□□□□ -0.21
NR1H3-231	ENST00000529540	ZNF486	Q96H40	463 aa	Predicted RBP	13.71	□□□□□ -0.21
NR1H3-231	ENST00000529540	C7orf34	Q96L11	122 aa		13.71	□□□□□ -0.21
NR1H3-231	ENST00000529540	TSSK3	Q96PN8	268 aa		13.71	□□□□□ -0.21
NR1H3-231	ENST00000529540	CDADC1	Q9BWV3	514 aa		13.71	□□□□□ -0.21
NR1H3-231	ENST00000529540	MS4A8	Q9BY19	250 aa		13.71	□□□□□ -0.21
NR1H3-231	ENST00000529540	ZBTB20	Q9HC78	741 aa	Predicted RBP	13.71	□□□□□ -0.21
NR1H3-231	ENST00000529540	ENAM	Q9NRM1	1142 aa		13.71	□□□□□ -0.21
NR1H3-231	ENST00000529540	FAM120C	Q9NX05	1096 aa	Known RBP	13.71	□□□□□ -0.21
NR1H3-231	ENST00000529540	ATXN7L1	Q9ULK2	861 aa	Predicted RBP	13.71	□□□□□ -0.21
NR1H3-231	ENST00000529540	KLHL20	Q9Y2M5	609 aa		13.71	□□□□□ -0.21
NR1H3-231	ENST00000529540	NDUFS4	O43181	175 aa		13.7	□□□□□ -0.22
NR1H3-231	ENST00000529540	LCMT2	O60294	686 aa	Known RBP	13.7	□□□□□ -0.22
NR1H3-231	ENST00000529540	CTSV	O60911	334 aa		13.7	□□□□□ -0.22
NR1H3-231	ENST00000529540	SCN2B	O60939	215 aa		13.7	□□□□□ -0.22
NR1H3-231	ENST00000529540	HOXB3	P14651	431 aa	Predicted RBP	13.7	□□□□□ -0.22
NR1H3-231	ENST00000529540	SPN	P16150	400 aa		13.7	□□□□□ -0.22
NR1H3-231	ENST00000529540	PRPS1L1	P21108	318 aa		13.7	□□□□□ -0.22
NR1H3-231	ENST00000529540	CCKBR	P32239	447 aa		13.7	□□□□□ -0.22
NR1H3-231	ENST00000529540	S100A5	P33763	92 aa		13.7	□□□□□ -0.22
NR1H3-231	ENST00000529540	NEK2	P51955	445 aa		13.7	□□□□□ -0.22
NR1H3-231	ENST00000529540	WNT3	P56703	355 aa		13.7	□□□□□ -0.22
NR1H3-231	ENST00000529540	RPS13	P62277	151 aa	Known RBP	13.7	□□□□□ -0.22
NR1H3-231	ENST00000529540	IFITM2	Q01629	132 aa		13.7	□□□□□ -0.22
NR1H3-231	ENST00000529540	ZFP36L1	Q07352	338 aa	Known RBP	13.7	□□□□□ -0.22
NR1H3-231	ENST00000529540	IRF3	Q14653	427 aa		13.7	□□□□□ -0.22
NR1H3-231	ENST00000529540	ZIC1	Q15915	447 aa		13.7	□□□□□ -0.22
NR1H3-231	ENST00000529540	SNAP47	Q5SQN1	464 aa		13.7	□□□□□ -0.22
NR1H3-231	ENST00000529540	KHDRBS2	Q5VWX1	349 aa	Known RBP	13.7	□□□□□ -0.22
NR1H3-231	ENST00000529540	OR4F3	Q6IEY1	312 aa		13.7	□□□□□ -0.22
NR1H3-231	ENST00000529540	VTCN1	Q7Z7D3	282 aa		13.7	□□□□□ -0.22
NR1H3-231	ENST00000529540	MCAT	Q8IVS2	390 aa	Known RBP	13.7	□□□□□ -0.22
NR1H3-231	ENST00000529540	SLITRK4	Q8IW52	837 aa		13.7	□□□□□ -0.22
NR1H3-231	ENST00000529540	OR8K5	Q8NH50	307 aa		13.7	□□□□□ -0.22
NR1H3-231	ENST00000529540	CHTF18	Q8WVB6	975 aa		13.7	□□□□□ -0.22
NR1H3-231	ENST00000529540	MTFMT	Q96DP5	389 aa	Known RBP	13.7	□□□□□ -0.22
NR1H3-231	ENST00000529540	CRELD1	Q96HD1	420 aa		13.7	□□□□□ -0.22
NR1H3-231	ENST00000529540	CCDC74B	Q96LY2	380 aa		13.7	□□□□□ -0.22
NR1H3-231	ENST00000529540	COL21A1	Q96P44	957 aa		13.7	□□□□□ -0.22
NR1H3-231	ENST00000529540	QRFPR	Q96P65	431 aa		13.7	□□□□□ -0.22
NR1H3-231	ENST00000529540	STRADB	Q9C0K7	418 aa		13.7	□□□□□ -0.22
NR1H3-231	ENST00000529540	ROGDI	Q9GZN7	287 aa		13.7	□□□□□ -0.22
NR1H3-231	ENST00000529540	RASSF1	Q9NS23	344 aa		13.7	□□□□□ -0.22
NR1H3-231	ENST00000529540	PCDHGB3	Q9Y5G1	929 aa		13.7	□□□□□ -0.22
NR1H3-231	ENST00000529540	CLCA1	A8K7I4	914 aa		13.69	□□□□□ -0.22
NR1H3-231	ENST00000529540	LOC110117498-PIK3R3	F6TDL0	507 aa		13.69	□□□□□ -0.22
NR1H3-231	ENST00000529540	MED26	O95402	600 aa		13.69	□□□□□ -0.22
NR1H3-231	ENST00000529540	B3GALT4	O96024	378 aa		13.69	□□□□□ -0.22
NR1H3-231	ENST00000529540	CEACAM1	P13688	526 aa		13.69	□□□□□ -0.22
NR1H3-231	ENST00000529540	CSTF2	P33240	577 aa	Known RBP eCLIP	13.69	□□□□□ -0.22
NR1H3-231	ENST00000529540	DEFA1	P59665	94 aa		13.69	□□□□□ -0.22

Retrieved 100 of 20,778 RNA–protein pairs in 49.1 ms