RNA–Protein interactions for RNA: ENST00000526734.5

VPS28-206, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 570 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-206ENST00000526734 ZNHIT1O43257 154 aa18.9■□□□□ 0.62
VPS28-206ENST00000526734 WDR1O75083 606 aa18.9■□□□□ 0.62
VPS28-206ENST00000526734 ERN1O75460 977 aaKnown RBP18.9■□□□□ 0.62
VPS28-206ENST00000526734 GDF1P27539 372 aa18.9■□□□□ 0.62
VPS28-206ENST00000526734 HTR1EP28566 365 aa18.9■□□□□ 0.62
VPS28-206ENST00000526734 KRT20P35900 424 aa18.9■□□□□ 0.62
VPS28-206ENST00000526734 NCBP2P52298 156 aaKnown RBP eCLIP18.9■□□□□ 0.625e-6■■□□□ 11.5
VPS28-206ENST00000526734 MRPS22P82650 360 aaKnown RBP18.9■□□□□ 0.62
VPS28-206ENST00000526734 NNATQ16517 81 aa18.9■□□□□ 0.62
VPS28-206ENST00000526734 GXYLT1Q4G148 440 aa18.9■□□□□ 0.62
VPS28-206ENST00000526734 SP5Q6BEB4 398 aaPredicted RBP18.9■□□□□ 0.62
VPS28-206ENST00000526734 Q6ZSR9 355 aa18.9■□□□□ 0.62
VPS28-206ENST00000526734 TWIST2Q8WVJ9 160 aa18.9■□□□□ 0.62
VPS28-206ENST00000526734 KAT2AQ92830 837 aa18.9■□□□□ 0.62
VPS28-206ENST00000526734 HGDQ93099 445 aa18.9■□□□□ 0.62
VPS28-206ENST00000526734 NTNG2Q96CW9 530 aa18.9■□□□□ 0.62
VPS28-206ENST00000526734 TMCO6Q96DC7 493 aa18.9■□□□□ 0.62
VPS28-206ENST00000526734 SLC35A4Q96G79 324 aa18.9■□□□□ 0.62
VPS28-206ENST00000526734 MECRQ9BV79 373 aa18.9■□□□□ 0.62
VPS28-206ENST00000526734 FIS1Q9Y3D6 152 aa18.9■□□□□ 0.62
VPS28-206ENST00000526734 TTC36A6NLP5 189 aa18.89■□□□□ 0.61
VPS28-206ENST00000526734 FAM47E-STBD1D6RA91 191 aa18.89■□□□□ 0.61
VPS28-206ENST00000526734 LSM1O15116 133 aaKnown RBP18.89■□□□□ 0.61
VPS28-206ENST00000526734 CTIFO43310 598 aaKnown RBP18.89■□□□□ 0.61
VPS28-206ENST00000526734 CHRNGP07510 517 aa18.89■□□□□ 0.61
VPS28-206ENST00000526734 BPGMP07738 259 aa18.89■□□□□ 0.61
VPS28-206ENST00000526734 CELA3AP09093 270 aa18.89■□□□□ 0.61
VPS28-206ENST00000526734 RFPL3SP0C7P2 107 aa18.89■□□□□ 0.61
VPS28-206ENST00000526734 GABRA1P14867 456 aa18.89■□□□□ 0.61
VPS28-206ENST00000526734 ACVR2AP27037 513 aa18.89■□□□□ 0.61
VPS28-206ENST00000526734 MAPK1P28482 360 aa18.89■□□□□ 0.61
VPS28-206ENST00000526734 PTGER4P35408 488 aa18.89■□□□□ 0.61
VPS28-206ENST00000526734 ETV4P43268 484 aa18.89■□□□□ 0.61
VPS28-206ENST00000526734 ASMTP46597 345 aa18.89■□□□□ 0.61
VPS28-206ENST00000526734 EFR3AQ14156 821 aa18.89■□□□□ 0.61
VPS28-206ENST00000526734 EMC4Q5J8M3 183 aa18.89■□□□□ 0.61
VPS28-206ENST00000526734 C3P1Q6ZMU1 363 aa18.89■□□□□ 0.61
VPS28-206ENST00000526734 DDIASQ8IXT1 998 aa18.89■□□□□ 0.61
VPS28-206ENST00000526734 SIMC1Q8NDZ2 872 aa18.89■□□□□ 0.61
VPS28-206ENST00000526734 OR7G2Q8NG99 324 aa18.89■□□□□ 0.61
VPS28-206ENST00000526734 ZFP28Q8NHY6 868 aa18.89■□□□□ 0.61
VPS28-206ENST00000526734 NEIL3Q8TAT5 605 aa18.89■□□□□ 0.61
VPS28-206ENST00000526734 RND1Q92730 232 aa18.89■□□□□ 0.61
VPS28-206ENST00000526734 MTERF3Q96E29 417 aa18.89■□□□□ 0.61
VPS28-206ENST00000526734 PPP3R2Q96LZ3 170 aa18.89■□□□□ 0.61
VPS28-206ENST00000526734 COL21A1Q96P44 957 aa18.89■□□□□ 0.61
VPS28-206ENST00000526734 OSBPL11Q9BXB4 747 aa18.89■□□□□ 0.61
VPS28-206ENST00000526734 TUBB1Q9H4B7 451 aa18.89■□□□□ 0.61
VPS28-206ENST00000526734 FOLH1BQ9HBA9 442 aa18.89■□□□□ 0.61
VPS28-206ENST00000526734 ACAD8Q9UKU7 415 aa18.89■□□□□ 0.61
VPS28-206ENST00000526734 C19orf53Q9UNZ5 99 aaPredicted RBP18.89■□□□□ 0.61
VPS28-206ENST00000526734 C15orf41Q9Y2V0 281 aa18.89■□□□□ 0.61
VPS28-206ENST00000526734 NCOA6Q14686 2063 aaPredicted RBP18.89■□□□□ 0.61
VPS28-206ENST00000526734 GTF3C1Q12789 2109 aa18.89■□□□□ 0.61
VPS28-206ENST00000526734 TMEM114B3SHH9 223 aa18.88■□□□□ 0.61
VPS28-206ENST00000526734 SNUPNO95149 360 aaKnown RBP18.88■□□□□ 0.61
VPS28-206ENST00000526734 LRATO95237 230 aa18.88■□□□□ 0.61
VPS28-206ENST00000526734 JUNP05412 331 aaKnown RBP18.88■□□□□ 0.61
VPS28-206ENST00000526734 LINC00032P0C843 101 aa18.88■□□□□ 0.61
VPS28-206ENST00000526734 SDC1P18827 310 aa18.88■□□□□ 0.61
VPS28-206ENST00000526734 RPL38P63173 70 aaKnown RBP18.88■□□□□ 0.61
VPS28-206ENST00000526734 UGT3A2Q3SY77 523 aa18.88■□□□□ 0.61
VPS28-206ENST00000526734 SH2D4BQ5SQS7 431 aa18.88■□□□□ 0.61
VPS28-206ENST00000526734 TIGD3Q6B0B8 471 aa18.88■□□□□ 0.61
VPS28-206ENST00000526734 KIRREL3Q8IZU9 778 aa18.88■□□□□ 0.61
VPS28-206ENST00000526734 OR2L13Q8N349 312 aa18.88■□□□□ 0.61
VPS28-206ENST00000526734 OR2T11Q8NH01 316 aa18.88■□□□□ 0.61
VPS28-206ENST00000526734 CA5BP1Q8WTZ4 195 aa18.88■□□□□ 0.61
VPS28-206ENST00000526734 SDCCAG3Q96C92 435 aa18.88■□□□□ 0.61
VPS28-206ENST00000526734 AMDHD1Q96NU7 426 aa18.88■□□□□ 0.61
VPS28-206ENST00000526734 UBQLN3Q9H347 655 aa18.88■□□□□ 0.61
VPS28-206ENST00000526734 REEP4Q9H6H4 257 aa18.88■□□□□ 0.61
VPS28-206ENST00000526734 PNPLA3Q9NST1 481 aa18.88■□□□□ 0.61
VPS28-206ENST00000526734 DDX18Q9NVP1 670 aaKnown RBP18.88■□□□□ 0.61
VPS28-206ENST00000526734 EXO1Q9UQ84 846 aaKnown RBP18.88■□□□□ 0.61
VPS28-206ENST00000526734 PTGDR2Q9Y5Y4 395 aa18.88■□□□□ 0.61
VPS28-206ENST00000526734 ACTL7BQ9Y614 415 aa18.88■□□□□ 0.61
VPS28-206ENST00000526734 PRAMEF25A6NGN4 478 aa18.87■□□□□ 0.61
VPS28-206ENST00000526734 PIP5K1BO14986 540 aa18.87■□□□□ 0.61
VPS28-206ENST00000526734 TM9SF1O15321 606 aa18.87■□□□□ 0.61
VPS28-206ENST00000526734 PDPK1O15530 556 aa18.87■□□□□ 0.61
VPS28-206ENST00000526734 UGT2B11O75310 529 aa18.87■□□□□ 0.61
VPS28-206ENST00000526734 REM1O75628 298 aa18.87■□□□□ 0.61
VPS28-206ENST00000526734 HPNP05981 417 aa18.87■□□□□ 0.61
VPS28-206ENST00000526734 MYZAPP0CAP1 466 aa18.87■□□□□ 0.61
VPS28-206ENST00000526734 CT45A8P0DMV1 189 aa18.87■□□□□ 0.61
VPS28-206ENST00000526734 CT45A9P0DMV2 189 aa18.87■□□□□ 0.61
VPS28-206ENST00000526734 TACR1P25103 407 aa18.87■□□□□ 0.61
VPS28-206ENST00000526734 CHRNB4P30926 498 aa18.87■□□□□ 0.61
VPS28-206ENST00000526734 RPL3P39023 403 aaKnown RBP18.87■□□□□ 0.61
VPS28-206ENST00000526734 MC3RP41968 323 aa18.87■□□□□ 0.61
VPS28-206ENST00000526734 CDK9P50750 372 aaKnown RBP18.87■□□□□ 0.61
VPS28-206ENST00000526734 ZNF155Q12901 538 aaPredicted RBP18.87■□□□□ 0.61
VPS28-206ENST00000526734 ZNHIT3Q15649 155 aaPredicted RBP18.87■□□□□ 0.61
VPS28-206ENST00000526734 CT45A2Q5DJT8 189 aa18.87■□□□□ 0.61
VPS28-206ENST00000526734 XKR7Q5GH72 579 aa18.87■□□□□ 0.61
VPS28-206ENST00000526734 LRIG3Q6UXM1 1119 aa18.87■□□□□ 0.61
VPS28-206ENST00000526734 B3GNT6Q6ZMB0 384 aa18.87■□□□□ 0.61
VPS28-206ENST00000526734 ZCCHC23Q6ZST2 131 aa18.87■□□□□ 0.61
VPS28-206ENST00000526734 R3HCC1LQ7Z5L2 792 aaKnown RBP18.87■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms