RNA–Protein interactions for RNA: ENST00000526553.5

CD44-223, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 571 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-223ENST00000526553 PRDX6P30041 224 aa3.54□□□□□ -1.84
CD44-223ENST00000526553 PRPHP41219 470 aa3.54□□□□□ -1.84
CD44-223ENST00000526553 RPL34P49207 117 aaKnown RBP3.54□□□□□ -1.84
CD44-223ENST00000526553 HSF2Q03933 536 aa3.54□□□□□ -1.84
CD44-223ENST00000526553 CYLC2Q14093 348 aaPredicted RBP3.54□□□□□ -1.84
CD44-223ENST00000526553 Q1RN00 199 aa3.54□□□□□ -1.84
CD44-223ENST00000526553 SHROOM1Q2M3G4 852 aaPredicted RBP3.54□□□□□ -1.84
CD44-223ENST00000526553 ANKDD1AQ495B1 522 aa3.54□□□□□ -1.84
CD44-223ENST00000526553 NHLRC3Q5JS37 347 aa3.54□□□□□ -1.84
CD44-223ENST00000526553 TMEM26Q6ZUK4 368 aa3.54□□□□□ -1.84
CD44-223ENST00000526553 BNIPLQ7Z465 357 aa3.54□□□□□ -1.84
CD44-223ENST00000526553 SLC22A16Q86VW1 577 aa3.54□□□□□ -1.84
CD44-223ENST00000526553 GVQW1Q8N7I0 195 aa3.54□□□□□ -1.84
CD44-223ENST00000526553 ZNF781Q8N8C0 355 aa3.54□□□□□ -1.84
CD44-223ENST00000526553 BEST4Q8NFU0 473 aa3.54□□□□□ -1.84
CD44-223ENST00000526553 OR52B4Q8NGK2 314 aa3.54□□□□□ -1.84
CD44-223ENST00000526553 RDH11Q8TC12 318 aa3.54□□□□□ -1.84
CD44-223ENST00000526553 PHYHIPQ92561 330 aa3.54□□□□□ -1.84
CD44-223ENST00000526553 TMEM45BQ96B21 275 aa3.54□□□□□ -1.84
CD44-223ENST00000526553 RAB40CQ96S21 281 aa3.54□□□□□ -1.84
CD44-223ENST00000526553 HSD17B14Q9BPX1 270 aa3.54□□□□□ -1.84
CD44-223ENST00000526553 COG4Q9H9E3 785 aa3.54□□□□□ -1.84
CD44-223ENST00000526553 GDF3Q9NR23 364 aa3.54□□□□□ -1.84
CD44-223ENST00000526553 ATXN10Q9UBB4 475 aa3.54□□□□□ -1.84
CD44-223ENST00000526553 CPQQ9Y646 472 aa3.54□□□□□ -1.84
CD44-223ENST00000526553 CFTRP13569 1480 aa3.54□□□□□ -1.84
CD44-223ENST00000526553 RAD54L2Q9Y4B4 1467 aa3.54□□□□□ -1.84
CD44-223ENST00000526553 ZMYM6O95789 1325 aa3.53□□□□□ -1.84
CD44-223ENST00000526553 TMCO5BA8MYB1 307 aa3.53□□□□□ -1.84
CD44-223ENST00000526553 LGALS8O00214 317 aa3.53□□□□□ -1.84
CD44-223ENST00000526553 TOM1L1O75674 476 aa3.53□□□□□ -1.84
CD44-223ENST00000526553 MFN2O95140 757 aa3.53□□□□□ -1.84
CD44-223ENST00000526553 RRASP10301 218 aa3.53□□□□□ -1.84
CD44-223ENST00000526553 HSPA5P11021 654 aaKnown RBP3.53□□□□□ -1.84
CD44-223ENST00000526553 MBL2P11226 248 aaPredicted RBP3.53□□□□□ -1.84
CD44-223ENST00000526553 TMOD1P28289 359 aa3.53□□□□□ -1.84
CD44-223ENST00000526553 MATKP42679 507 aa3.53□□□□□ -1.84
CD44-223ENST00000526553 NLRP11P59045 1033 aaKnown RBP3.53□□□□□ -1.84
CD44-223ENST00000526553 RUNX3Q13761 415 aa3.53□□□□□ -1.84
CD44-223ENST00000526553 PCK2Q16822 640 aa3.53□□□□□ -1.84
CD44-223ENST00000526553 WSCD2Q2TBF2 565 aa3.53□□□□□ -1.84
CD44-223ENST00000526553 AGKQ53H12 422 aa3.53□□□□□ -1.84
CD44-223ENST00000526553 LCE3EQ5T5B0 92 aa3.53□□□□□ -1.84
CD44-223ENST00000526553 LINC00242Q5T6M2 205 aa3.53□□□□□ -1.84
CD44-223ENST00000526553 ARMCX5Q6P1M9 558 aa3.53□□□□□ -1.84
CD44-223ENST00000526553 LRRC8BQ6P9F7 803 aa3.53□□□□□ -1.84
CD44-223ENST00000526553 ASRGL1Q7L266 308 aa3.53□□□□□ -1.84
CD44-223ENST00000526553 PPP1R42Q7Z4L9 355 aa3.53□□□□□ -1.84
CD44-223ENST00000526553 ADGRD2Q7Z7M1 963 aa3.53□□□□□ -1.84
CD44-223ENST00000526553 LCA5Q86VQ0 697 aa3.53□□□□□ -1.84
CD44-223ENST00000526553 AMZ2Q86W34 360 aa3.53□□□□□ -1.84
CD44-223ENST00000526553 HIPK1Q86Z02 1210 aa3.53□□□□□ -1.84
CD44-223ENST00000526553 MISPQ8IVT2 679 aa3.53□□□□□ -1.84
CD44-223ENST00000526553 ZNRF1Q8ND25 227 aa3.53□□□□□ -1.84
CD44-223ENST00000526553 FBXO30Q8TB52 745 aa3.53□□□□□ -1.84
CD44-223ENST00000526553 TMEM37Q8WXS4 190 aa3.53□□□□□ -1.84
CD44-223ENST00000526553 P3H4Q92791 437 aa3.53□□□□□ -1.84
CD44-223ENST00000526553 APOL2Q9BQE5 337 aa3.53□□□□□ -1.84
CD44-223ENST00000526553 NDUFAF3Q9BU61 184 aa3.53□□□□□ -1.84
CD44-223ENST00000526553 TPPP3Q9BW30 176 aa3.53□□□□□ -1.84
CD44-223ENST00000526553 CARD6Q9BX69 1037 aa3.53□□□□□ -1.84
CD44-223ENST00000526553 NT5C3AQ9H0P0 336 aa3.53□□□□□ -1.84
CD44-223ENST00000526553 LIME1Q9H400 295 aa3.53□□□□□ -1.84
CD44-223ENST00000526553 TSPY26PQ9H489 355 aa3.53□□□□□ -1.84
CD44-223ENST00000526553 SDAD1Q9NVU7 687 aaKnown RBP eCLIP3.53□□□□□ -1.84
CD44-223ENST00000526553 CGNQ9P2M7 1197 aaKnown RBP3.53□□□□□ -1.84
CD44-223ENST00000526553 LHX3Q9UBR4 397 aa3.53□□□□□ -1.84
CD44-223ENST00000526553 DYNC1LI1Q9Y6G9 523 aaKnown RBP3.53□□□□□ -1.84
CD44-223ENST00000526553 DDX49Q9Y6V7 483 aaKnown RBP3.53□□□□□ -1.84
CD44-223ENST00000526553 ZNF646O15015 1829 aaPredicted RBP3.53□□□□□ -1.84
CD44-223ENST00000526553 AQRO60306 1485 aaKnown RBP eCLIP3.53□□□□□ -1.84
CD44-223ENST00000526553 PTPRUQ92729 1446 aa3.53□□□□□ -1.85
CD44-223ENST00000526553 TEX48A0A1B0GUV7 120 aa3.52□□□□□ -1.85
CD44-223ENST00000526553 FOXI3A8MTJ6 420 aaPredicted RBP3.52□□□□□ -1.85
CD44-223ENST00000526553 E9PMD0 336 aa3.52□□□□□ -1.85
CD44-223ENST00000526553 SGK494L7N484 410 aa3.52□□□□□ -1.85
CD44-223ENST00000526553 TSPAN2O60636 221 aa3.52□□□□□ -1.85
CD44-223ENST00000526553 VPS26AO75436 327 aa3.52□□□□□ -1.85
CD44-223ENST00000526553 VENTXO95231 258 aa3.52□□□□□ -1.85
CD44-223ENST00000526553 FCER2P06734 321 aa3.52□□□□□ -1.85
CD44-223ENST00000526553 FHP07954 510 aa3.52□□□□□ -1.85
CD44-223ENST00000526553 CALCBP10092 127 aa3.52□□□□□ -1.85
CD44-223ENST00000526553 DPP4P27487 766 aa3.52□□□□□ -1.85
CD44-223ENST00000526553 PPP2R1AP30153 589 aa3.52□□□□□ -1.85
CD44-223ENST00000526553 PRDX2P32119 198 aa3.52□□□□□ -1.85
CD44-223ENST00000526553 BTG3Q14201 252 aaPredicted RBP3.52□□□□□ -1.85
CD44-223ENST00000526553 HAGHQ16775 308 aa3.52□□□□□ -1.85
CD44-223ENST00000526553 ZSWIM7Q19AV6 140 aa3.52□□□□□ -1.85
CD44-223ENST00000526553 RNF212Q495C1 297 aa3.52□□□□□ -1.85
CD44-223ENST00000526553 TMEM41BQ5BJD5 291 aa3.52□□□□□ -1.85
CD44-223ENST00000526553 LDLRAP1Q5SW96 308 aa3.52□□□□□ -1.85
CD44-223ENST00000526553 ATAD3CQ5T2N8 411 aa3.52□□□□□ -1.85
CD44-223ENST00000526553 LIPJQ5W064 366 aa3.52□□□□□ -1.85
CD44-223ENST00000526553 KRTAP5-1Q6L8H4 278 aa3.52□□□□□ -1.85
CD44-223ENST00000526553 ZNF730Q6ZMV8 503 aa3.52□□□□□ -1.85
CD44-223ENST00000526553 Q6ZRG5 221 aa3.52□□□□□ -1.85
CD44-223ENST00000526553 GOLGA7Q7Z5G4 137 aa3.52□□□□□ -1.85
CD44-223ENST00000526553 ZNF573Q86YE8 665 aa3.52□□□□□ -1.85
CD44-223ENST00000526553 C11orf53Q8IXP5 236 aa3.52□□□□□ -1.85
CD44-223ENST00000526553 PARP8Q8N3A8 854 aa3.52□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms