RNA–Protein interactions for RNA: ENST00000520286.5

LSM1-202, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best)

Gene LSM1, Length 776 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-202ENST00000520286 RIBC2Q9H4K1 309 aa6.32□□□□□ -1.4
LSM1-202ENST00000520286 KCNK13Q9HB14 408 aa6.32□□□□□ -1.4
LSM1-202ENST00000520286 CENPMQ9NSP4 180 aa6.32□□□□□ -1.4
LSM1-202ENST00000520286 ATAD3AQ9NVI7 634 aa6.32□□□□□ -1.4
LSM1-202ENST00000520286 AATFQ9NY61 560 aaKnown RBP eCLIP6.32□□□□□ -1.4
LSM1-202ENST00000520286 KIF24Q5T7B8 1368 aa6.31□□□□□ -1.4
LSM1-202ENST00000520286 CCDC171Q6TFL3 1326 aa6.31□□□□□ -1.4
LSM1-202ENST00000520286 ARHGEF28Q8N1W1 1705 aaKnown RBP6.31□□□□□ -1.4
LSM1-202ENST00000520286 TOPAZ1Q8N9V7 1692 aa6.31□□□□□ -1.4
LSM1-202ENST00000520286 IQCMA0A1B0GVH7 501 aa6.31□□□□□ -1.4
LSM1-202ENST00000520286 A0A1B0GWJ7 208 aa6.31□□□□□ -1.4
LSM1-202ENST00000520286 ANKRD30BLA7E2S9 258 aa6.31□□□□□ -1.4
LSM1-202ENST00000520286 MTRF1O75570 445 aaKnown RBP6.31□□□□□ -1.4
LSM1-202ENST00000520286 APBB3O95704 486 aa6.31□□□□□ -1.4
LSM1-202ENST00000520286 KRT13P13646 458 aa6.31□□□□□ -1.4
LSM1-202ENST00000520286 ADSSP30520 456 aa6.31□□□□□ -1.4
LSM1-202ENST00000520286 CASQ1P31415 396 aa6.31□□□□□ -1.4
LSM1-202ENST00000520286 MTIF2P46199 727 aaKnown RBP6.31□□□□□ -1.4
LSM1-202ENST00000520286 OVGP1Q12889 678 aa6.31□□□□□ -1.4
LSM1-202ENST00000520286 RIGQ13278 110 aa6.31□□□□□ -1.4
LSM1-202ENST00000520286 RFTN1Q14699 578 aaPredicted RBP6.31□□□□□ -1.4
LSM1-202ENST00000520286 HLA-BQ31612 363 aa6.31□□□□□ -1.4
LSM1-202ENST00000520286 ARMCX2Q7L311 632 aa6.31□□□□□ -1.4
LSM1-202ENST00000520286 LINC00518Q8N0U6 118 aa6.31□□□□□ -1.4
LSM1-202ENST00000520286 GVQW1Q8N7I0 195 aa6.31□□□□□ -1.4
LSM1-202ENST00000520286 CCDC112Q8NEF3 446 aa6.31□□□□□ -1.4
LSM1-202ENST00000520286 ZNF300Q96RE9 604 aaPredicted RBP6.31□□□□□ -1.4
LSM1-202ENST00000520286 NDUFAF3Q9BU61 184 aa6.31□□□□□ -1.4
LSM1-202ENST00000520286 DGCR6LQ9BY27 220 aa6.31□□□□□ -1.4
LSM1-202ENST00000520286 NLNQ9BYT8 704 aa6.31□□□□□ -1.4
LSM1-202ENST00000520286 SLC25A19Q9HC21 320 aa6.31□□□□□ -1.4
LSM1-202ENST00000520286 GTSE1Q9NYZ3 720 aa6.31□□□□□ -1.4
LSM1-202ENST00000520286 NLGN3Q9NZ94 848 aa6.31□□□□□ -1.4
LSM1-202ENST00000520286 RSPH14Q9UHP6 348 aa6.31□□□□□ -1.4
LSM1-202ENST00000520286 ZNF490Q9ULM2 529 aaPredicted RBP6.31□□□□□ -1.4
LSM1-202ENST00000520286 SLC6A5Q9Y345 797 aa6.31□□□□□ -1.4
LSM1-202ENST00000520286 PYGO1Q9Y3Y4 419 aa6.31□□□□□ -1.4
LSM1-202ENST00000520286 ZNF175Q9Y473 711 aa6.31□□□□□ -1.4
LSM1-202ENST00000520286 RNF215Q9Y6U7 377 aa6.31□□□□□ -1.4
LSM1-202ENST00000520286 EVC2Q86UK5 1308 aa6.3□□□□□ -1.4
LSM1-202ENST00000520286 PXDNLA1KZ92 1463 aa6.3□□□□□ -1.4
LSM1-202ENST00000520286 A0A0U1RQV5 110 aa6.3□□□□□ -1.4
LSM1-202ENST00000520286 ERICH4A6NGS2 130 aa6.3□□□□□ -1.4
LSM1-202ENST00000520286 MEI4A8MW99 385 aa6.3□□□□□ -1.4
LSM1-202ENST00000520286 TMCO5BA8MYB1 307 aa6.3□□□□□ -1.4
LSM1-202ENST00000520286 PDXKO00764 312 aa6.3□□□□□ -1.4
LSM1-202ENST00000520286 ANGPT2O15123 496 aa6.3□□□□□ -1.4
LSM1-202ENST00000520286 TNFSF12O43508 249 aa6.3□□□□□ -1.4
LSM1-202ENST00000520286 NXPH2O95156 264 aa6.3□□□□□ -1.4
LSM1-202ENST00000520286 CLDN1O95832 211 aa6.3□□□□□ -1.4
LSM1-202ENST00000520286 FCER2P06734 321 aa6.3□□□□□ -1.4
LSM1-202ENST00000520286 FAM200BP0CF97 657 aa6.3□□□□□ -1.4
LSM1-202ENST00000520286 PAICSP22234 425 aaKnown RBP6.3□□□□□ -1.4
LSM1-202ENST00000520286 MMP12P39900 470 aa6.3□□□□□ -1.4
LSM1-202ENST00000520286 FAM189A2Q15884 450 aa6.3□□□□□ -1.4
LSM1-202ENST00000520286 ZSWIM7Q19AV6 140 aa6.3□□□□□ -1.4
LSM1-202ENST00000520286 ADPRMQ3LIE5 342 aa6.3□□□□□ -1.4
LSM1-202ENST00000520286 ADAMTSL4-AS1Q5T5F5 129 aa6.3□□□□□ -1.4
LSM1-202ENST00000520286 NEPROQ6NW34 567 aa6.3□□□□□ -1.4
LSM1-202ENST00000520286 STEAP1BQ6NZ63 245 aa6.3□□□□□ -1.4
LSM1-202ENST00000520286 Q6ZRP5 223 aa6.3□□□□□ -1.4
LSM1-202ENST00000520286 ITPRIPQ8IWB1 547 aa6.3□□□□□ -1.4
LSM1-202ENST00000520286 OR6F1Q8NGZ6 308 aa6.3□□□□□ -1.4
LSM1-202ENST00000520286 THRSPQ92748 146 aa6.3□□□□□ -1.4
LSM1-202ENST00000520286 MCHR2Q969V1 340 aa6.3□□□□□ -1.4
LSM1-202ENST00000520286 PGLYRP2Q96PD5 576 aa6.3□□□□□ -1.4
LSM1-202ENST00000520286 KRT12Q99456 494 aa6.3□□□□□ -1.4
LSM1-202ENST00000520286 ZNF416Q9BWM5 594 aa6.3□□□□□ -1.4
LSM1-202ENST00000520286 TEX13BQ9BXU2 312 aa6.3□□□□□ -1.4
LSM1-202ENST00000520286 WDR13Q9H1Z4 485 aa6.3□□□□□ -1.4
LSM1-202ENST00000520286 PLEKHA3Q9HB20 300 aa6.3□□□□□ -1.4
LSM1-202ENST00000520286 PLCXD1Q9NUJ7 323 aa6.3□□□□□ -1.4
LSM1-202ENST00000520286 TBK1Q9UHD2 729 aa6.3□□□□□ -1.4
LSM1-202ENST00000520286 BAIAP2L1Q9UHR4 511 aa6.3□□□□□ -1.4
LSM1-202ENST00000520286 LAMP5Q9UJQ1 280 aa6.3□□□□□ -1.4
LSM1-202ENST00000520286 KLHDC2Q9Y2U9 406 aa6.3□□□□□ -1.4
LSM1-202ENST00000520286 MRPS18CQ9Y3D5 142 aaKnown RBP6.3□□□□□ -1.4
LSM1-202ENST00000520286 MFHAS1Q9Y4C4 1052 aa6.3□□□□□ -1.4
LSM1-202ENST00000520286 QSER1Q2KHR3 1735 aa6.3□□□□□ -1.4
LSM1-202ENST00000520286 WDR90Q96KV7 1748 aa6.3□□□□□ -1.4
LSM1-202ENST00000520286 PALLDQ8WX93 1383 aa6.3□□□□□ -1.4
LSM1-202ENST00000520286 PLEKHG2Q9H7P9 1386 aa6.3□□□□□ -1.4
LSM1-202ENST00000520286 NFAT5O94916 1531 aa6.3□□□□□ -1.4
LSM1-202ENST00000520286 KCPQ6ZWJ8 1503 aa6.3□□□□□ -1.4
LSM1-202ENST00000520286 BTAF1O14981 1849 aa6.29□□□□□ -1.4
LSM1-202ENST00000520286 CICQ96RK0 1608 aaPredicted RBP6.29□□□□□ -1.4
LSM1-202ENST00000520286 INPP4BO15327 924 aa6.29□□□□□ -1.4
LSM1-202ENST00000520286 ATP8B1O43520 1251 aa6.29□□□□□ -1.4
LSM1-202ENST00000520286 ZNF432O94892 652 aa6.29□□□□□ -1.4
LSM1-202ENST00000520286 FHP07954 510 aa6.29□□□□□ -1.4
LSM1-202ENST00000520286 CALCBP10092 127 aa6.29□□□□□ -1.4
LSM1-202ENST00000520286 CYP11B1P15538 503 aa6.29□□□□□ -1.4
LSM1-202ENST00000520286 ID1P41134 155 aa6.29□□□□□ -1.4
LSM1-202ENST00000520286 PRPHP41219 470 aa6.29□□□□□ -1.4
LSM1-202ENST00000520286 MATKP42679 507 aa6.29□□□□□ -1.4
LSM1-202ENST00000520286 ZFP36L2P47974 494 aaKnown RBP6.29□□□□□ -1.4
LSM1-202ENST00000520286 GTF2A1P52655 376 aaPredicted RBP6.29□□□□□ -1.4
LSM1-202ENST00000520286 NDST1P52848 882 aa6.29□□□□□ -1.4
LSM1-202ENST00000520286 SULT1C3Q6IMI6 304 aa6.29□□□□□ -1.4
LSM1-202ENST00000520286 GOLGA7Q7Z5G4 137 aa6.29□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms