RNA–Protein interactions for RNA: ENST00000514665.1

USP53-209, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,233 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-209ENST00000514665 ZNF691Q5VV52 312 aa12.02□□□□□ -0.49
USP53-209ENST00000514665 DESI1Q6ICB0 168 aa12.02□□□□□ -0.49
USP53-209ENST00000514665 SH2D5Q6ZV89 423 aa12.02□□□□□ -0.49
USP53-209ENST00000514665 TTLL10Q6ZVT0 673 aa12.02□□□□□ -0.49
USP53-209ENST00000514665 HTR3DQ70Z44 454 aa12.02□□□□□ -0.49
USP53-209ENST00000514665 SLC9B2Q86UD5 537 aa12.02□□□□□ -0.49
USP53-209ENST00000514665 METTL25Q8N6Q8 603 aa12.02□□□□□ -0.49
USP53-209ENST00000514665 TESCQ96BS2 214 aa12.02□□□□□ -0.49
USP53-209ENST00000514665 SERINC1Q9NRX5 453 aa12.02□□□□□ -0.49
USP53-209ENST00000514665 FBXL3Q9UKT7 428 aa12.02□□□□□ -0.49
USP53-209ENST00000514665 NPIPA1Q9UND3 350 aa12.02□□□□□ -0.49
USP53-209ENST00000514665 DDX60Q8IY21 1712 aaKnown RBP12.02□□□□□ -0.49
USP53-209ENST00000514665 DNAJC13O75165 2243 aa12.02□□□□□ -0.49
USP53-209ENST00000514665 METTL21EPA6NDL7 271 aa12.02□□□□□ -0.49
USP53-209ENST00000514665 GSTT2P0CG29 244 aa12.02□□□□□ -0.49
USP53-209ENST00000514665 DRD5P21918 477 aa12.02□□□□□ -0.49
USP53-209ENST00000514665 HSD11B1P28845 292 aa12.02□□□□□ -0.49
USP53-209ENST00000514665 NTRK2Q16620 822 aa12.02□□□□□ -0.49
USP53-209ENST00000514665 EOGTQ5NDL2 527 aa12.02□□□□□ -0.49
USP53-209ENST00000514665 ZC3H14Q6PJT7 736 aaKnown RBP12.02□□□□□ -0.49
USP53-209ENST00000514665 ZNF227Q86WZ6 799 aa12.02□□□□□ -0.49
USP53-209ENST00000514665 FAM83CQ9BQN1 747 aa12.02□□□□□ -0.49
USP53-209ENST00000514665 DPH1Q9BZG8 443 aa12.02□□□□□ -0.49
USP53-209ENST00000514665 CHMP1AQ9HD42 196 aaPredicted RBP12.02□□□□□ -0.49
USP53-209ENST00000514665 C12orf4Q9NQ89 552 aa12.02□□□□□ -0.49
USP53-209ENST00000514665 NUDT15Q9NV35 164 aa12.02□□□□□ -0.49
USP53-209ENST00000514665 PGAP2Q9UHJ9 254 aa12.02□□□□□ -0.49
USP53-209ENST00000514665 CYP8B1Q9UNU6 501 aa12.02□□□□□ -0.49
USP53-209ENST00000514665 A0A1B0GVC2 190 aa12.01□□□□□ -0.49
USP53-209ENST00000514665 GXYLT2A0PJZ3 443 aa12.01□□□□□ -0.49
USP53-209ENST00000514665 A6NIN4 97 aa12.01□□□□□ -0.49
USP53-209ENST00000514665 CFIP05156 583 aa12.01□□□□□ -0.49
USP53-209ENST00000514665 ADORA3P0DMS8 318 aa12.01□□□□□ -0.49
USP53-209ENST00000514665 DDCP20711 480 aa12.01□□□□□ -0.49
USP53-209ENST00000514665 CD40LGP29965 261 aa12.01□□□□□ -0.49
USP53-209ENST00000514665 SYPL1Q16563 259 aa12.01□□□□□ -0.49
USP53-209ENST00000514665 LRRC37A5PQ49AS3 106 aa12.01□□□□□ -0.49
USP53-209ENST00000514665 ALG10BQ5I7T1 473 aa12.01□□□□□ -0.49
USP53-209ENST00000514665 HMBOX1Q6NT76 420 aa12.01□□□□□ -0.49
USP53-209ENST00000514665 PNCKQ6P2M8 343 aa12.01□□□□□ -0.49
USP53-209ENST00000514665 DNM1P34Q6PK57 102 aa12.01□□□□□ -0.49
USP53-209ENST00000514665 SPRED1Q7Z699 444 aa12.01□□□□□ -0.49
USP53-209ENST00000514665 GPALPP1Q8IXQ4 340 aa12.01□□□□□ -0.49
USP53-209ENST00000514665 OR9A2Q8NGT5 310 aa12.01□□□□□ -0.49
USP53-209ENST00000514665 RPLP0P6Q8NHW5 317 aa12.01□□□□□ -0.49
USP53-209ENST00000514665 TNFRSF12AQ9NP84 129 aa12.01□□□□□ -0.49
USP53-209ENST00000514665 CD300AQ9UGN4 299 aa12.01□□□□□ -0.49
USP53-209ENST00000514665 NUFIP1Q9UHK0 495 aaKnown RBP12.01□□□□□ -0.49
USP53-209ENST00000514665 FAM183AA6NL82 134 aa12.01□□□□□ -0.49
USP53-209ENST00000514665 FMO6PO60774 539 aa12.01□□□□□ -0.49
USP53-209ENST00000514665 PRH1P02810 166 aa12.01□□□□□ -0.49
USP53-209ENST00000514665 RGS6P49758 472 aa12.01□□□□□ -0.49
USP53-209ENST00000514665 APOFQ13790 326 aa12.01□□□□□ -0.49
USP53-209ENST00000514665 HNRNPA1L2Q32P51 320 aaKnown RBP12.01□□□□□ -0.49
USP53-209ENST00000514665 PHC2Q8IXK0 858 aa12.01□□□□□ -0.49
USP53-209ENST00000514665 LILRA3Q8N6C8 439 aaPredicted RBP12.01□□□□□ -0.49
USP53-209ENST00000514665 INO80EQ8NBZ0 244 aaPredicted RBP12.01□□□□□ -0.49
USP53-209ENST00000514665 OR6N1Q8NGY5 312 aa12.01□□□□□ -0.49
USP53-209ENST00000514665 OR56A3Q8NH54 315 aa12.01□□□□□ -0.49
USP53-209ENST00000514665 OLIG1Q8TAK6 271 aa12.01□□□□□ -0.49
USP53-209ENST00000514665 SETD6Q8TBK2 473 aa12.01□□□□□ -0.49
USP53-209ENST00000514665 AKAP1Q92667 903 aaKnown RBP eCLIP12.01□□□□□ -0.49
USP53-209ENST00000514665 CCDC120Q96HB5 630 aa12.01□□□□□ -0.49
USP53-209ENST00000514665 CPNE5Q9HCH3 593 aa12.01□□□□□ -0.49
USP53-209ENST00000514665 SDHAF3Q9NRP4 125 aa12.01□□□□□ -0.49
USP53-209ENST00000514665 CARD8Q9Y2G2 431 aa12.01□□□□□ -0.49
USP53-209ENST00000514665 NPIPA5A0A0B4J1W7 369 aa12.01□□□□□ -0.49
USP53-209ENST00000514665 A0A0G2JPF8 293 aa12.01□□□□□ -0.49
USP53-209ENST00000514665 FAM171A2A8MVW0 826 aa12.01□□□□□ -0.49
USP53-209ENST00000514665 HNRNPCL3B7ZW38 293 aa12.01□□□□□ -0.49
USP53-209ENST00000514665 NPIPA7E9PJI5 369 aa12.01□□□□□ -0.49
USP53-209ENST00000514665 NPIPA8P0DM63 369 aa12.01□□□□□ -0.49
USP53-209ENST00000514665 HNRNPCL4P0DMR1 293 aa12.01□□□□□ -0.49
USP53-209ENST00000514665 RNH1P13489 461 aaKnown RBP12.01□□□□□ -0.49
USP53-209ENST00000514665 DNASE1P24855 282 aa12.01□□□□□ -0.49
USP53-209ENST00000514665 HRH2P25021 359 aa12.01□□□□□ -0.49
USP53-209ENST00000514665 LCN1P31025 176 aa12.01□□□□□ -0.49
USP53-209ENST00000514665 HOXC13P31276 330 aa12.01□□□□□ -0.49
USP53-209ENST00000514665 MAGEA2P43356 314 aa12.01□□□□□ -0.49
USP53-209ENST00000514665 FNTBP49356 437 aa12.01□□□□□ -0.49
USP53-209ENST00000514665 WNT4P56705 351 aa12.01□□□□□ -0.49
USP53-209ENST00000514665 FXYD6P3P58550 94 aa12.01□□□□□ -0.49
USP53-209ENST00000514665 ZNF33BQ06732 778 aa12.01□□□□□ -0.49
USP53-209ENST00000514665 C6orf132Q5T0Z8 1188 aa12.01□□□□□ -0.49
USP53-209ENST00000514665 FIGLAQ6QHK4 219 aa12.01□□□□□ -0.49
USP53-209ENST00000514665 OR5T3Q8NGG3 340 aa12.01□□□□□ -0.49
USP53-209ENST00000514665 TMEM41AQ96HV5 264 aa12.01□□□□□ -0.49
USP53-209ENST00000514665 CCDC115Q96NT0 180 aa12.01□□□□□ -0.49
USP53-209ENST00000514665 MMP28Q9H239 520 aa12.01□□□□□ -0.49
USP53-209ENST00000514665 DDX60LQ5H9U9 1706 aaKnown RBP12.01□□□□□ -0.49
USP53-209ENST00000514665 SLC19A2O60779 497 aa12□□□□□ -0.49
USP53-209ENST00000514665 JRKO75564 520 aa12□□□□□ -0.49
USP53-209ENST00000514665 PTTG1O95997 202 aa12□□□□□ -0.49
USP53-209ENST00000514665 TMEM69Q5SWH9 247 aa12□□□□□ -0.49
USP53-209ENST00000514665 SFRP4Q6FHJ7 346 aaPredicted RBP12□□□□□ -0.49
USP53-209ENST00000514665 USP53Q70EK8 1073 aa12□□□□□ -0.49
USP53-209ENST00000514665 VRK3Q8IV63 474 aa12□□□□□ -0.49
USP53-209ENST00000514665 ACOT4Q8N9L9 421 aa12□□□□□ -0.49
USP53-209ENST00000514665 SPERTQ8NA61 448 aa12□□□□□ -0.49
USP53-209ENST00000514665 SGTBQ96EQ0 304 aa12□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms