RNA–Protein interactions for RNA: ENST00000514093.5

SQSTM1-215, Transcript of sequestosome 1, humanhuman

TSL 5

Gene SQSTM1, Length 842 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-215ENST00000514093 CGAP01215 116 aa18.34■□□□□ 0.53
SQSTM1-215ENST00000514093 THBDP07204 575 aa18.34■□□□□ 0.53
SQSTM1-215ENST00000514093 NEK2P51955 445 aa18.34■□□□□ 0.53
SQSTM1-215ENST00000514093 ARL4CP56559 192 aa18.34■□□□□ 0.53
SQSTM1-215ENST00000514093 HMGCS1Q01581 520 aa18.34■□□□□ 0.53
SQSTM1-215ENST00000514093 PDIA2Q13087 525 aaKnown RBP18.34■□□□□ 0.53
SQSTM1-215ENST00000514093 VEZF1Q14119 521 aa18.34■□□□□ 0.53
SQSTM1-215ENST00000514093 C6orf163Q5TEZ5 329 aa18.34■□□□□ 0.53
SQSTM1-215ENST00000514093 ZNF704Q6ZNC4 412 aaPredicted RBP18.34■□□□□ 0.53
SQSTM1-215ENST00000514093 GAS2L3Q86XJ1 694 aa18.34■□□□□ 0.53
SQSTM1-215ENST00000514093 TMEM158Q8WZ71 300 aa18.34■□□□□ 0.53
SQSTM1-215ENST00000514093 LCORQ96JN0 433 aaPredicted RBP18.34■□□□□ 0.53
SQSTM1-215ENST00000514093 NUDT4Q9NZJ9 180 aa18.34■□□□□ 0.53
SQSTM1-215ENST00000514093 DKKL1Q9UK85 242 aa18.34■□□□□ 0.53
SQSTM1-215ENST00000514093 C17orf51A8MQB3 221 aa18.33■□□□□ 0.52
SQSTM1-215ENST00000514093 H0YC42 278 aa18.33■□□□□ 0.52
SQSTM1-215ENST00000514093 ZIC3O60481 467 aa18.33■□□□□ 0.52
SQSTM1-215ENST00000514093 IFNA2P01563 188 aa18.33■□□□□ 0.52
SQSTM1-215ENST00000514093 CPMP14384 443 aa18.33■□□□□ 0.52
SQSTM1-215ENST00000514093 STMN1P16949 149 aa18.33■□□□□ 0.52
SQSTM1-215ENST00000514093 ARFIP1P53367 373 aa18.33■□□□□ 0.52
SQSTM1-215ENST00000514093 TPD52P55327 224 aaPredicted RBP18.33■□□□□ 0.52
SQSTM1-215ENST00000514093 CPSF6Q16630 551 aaKnown RBP eCLIP18.33■□□□□ 0.52
SQSTM1-215ENST00000514093 CLEC12BQ2HXU8 276 aa18.33■□□□□ 0.52
SQSTM1-215ENST00000514093 EXOC3L2Q2M3D2 409 aa18.33■□□□□ 0.52
SQSTM1-215ENST00000514093 NUDT13Q86X67 352 aa18.33■□□□□ 0.52
SQSTM1-215ENST00000514093 ADCY4Q8NFM4 1077 aa18.33■□□□□ 0.52
SQSTM1-215ENST00000514093 STAG3L4Q8TBR4 150 aa18.33■□□□□ 0.52
SQSTM1-215ENST00000514093 ACTRT1Q8TDG2 376 aa18.33■□□□□ 0.52
SQSTM1-215ENST00000514093 UBXN10Q96LJ8 280 aa18.33■□□□□ 0.52
SQSTM1-215ENST00000514093 YAE1D1Q9NRH1 226 aa18.33■□□□□ 0.52
SQSTM1-215ENST00000514093 NSMCE4AQ9NXX6 385 aa18.33■□□□□ 0.52
SQSTM1-215ENST00000514093 PCDHGA11Q9Y5H2 935 aa18.33■□□□□ 0.52
SQSTM1-215ENST00000514093 GOLGA6L6A8MZA4 724 aa18.32■□□□□ 0.52
SQSTM1-215ENST00000514093 B4DXG7 233 aa18.32■□□□□ 0.52
SQSTM1-215ENST00000514093 KLF4O43474 513 aa18.32■□□□□ 0.52
SQSTM1-215ENST00000514093 TP53P04637 393 aaPredicted RBP18.32■□□□□ 0.52
SQSTM1-215ENST00000514093 PORP16435 677 aaPredicted RBP18.32■□□□□ 0.52
SQSTM1-215ENST00000514093 TBXA2RP21731 343 aa18.32■□□□□ 0.52
SQSTM1-215ENST00000514093 PIK3CGP48736 1102 aa18.32■□□□□ 0.52
SQSTM1-215ENST00000514093 CLDN15P56746 228 aa18.32■□□□□ 0.52
SQSTM1-215ENST00000514093 MGAT2Q10469 447 aa18.32■□□□□ 0.52
SQSTM1-215ENST00000514093 DLG1Q12959 904 aa18.32■□□□□ 0.52
SQSTM1-215ENST00000514093 CUL3Q13618 768 aa18.32■□□□□ 0.52
SQSTM1-215ENST00000514093 SH2D5Q6ZV89 423 aa18.32■□□□□ 0.52
SQSTM1-215ENST00000514093 ISCA2Q86U28 154 aa18.32■□□□□ 0.52
SQSTM1-215ENST00000514093 TMBIM1Q969X1 311 aa18.32■□□□□ 0.52
SQSTM1-215ENST00000514093 OSBPL9Q96SU4 736 aa18.32■□□□□ 0.52
SQSTM1-215ENST00000514093 REG4Q9BYZ8 158 aa18.32■□□□□ 0.52
SQSTM1-215ENST00000514093 PLLPQ9Y342 182 aa18.32■□□□□ 0.52
SQSTM1-215ENST00000514093 TSC22D4Q9Y3Q8 395 aa18.32■□□□□ 0.52
SQSTM1-215ENST00000514093 ANGPTL3Q9Y5C1 460 aa18.32■□□□□ 0.52
SQSTM1-215ENST00000514093 EMC8O43402 210 aa18.31■□□□□ 0.52
SQSTM1-215ENST00000514093 REM1O75628 298 aa18.31■□□□□ 0.52
SQSTM1-215ENST00000514093 DPP4P27487 766 aa18.31■□□□□ 0.52
SQSTM1-215ENST00000514093 FEN1P39748 380 aaKnown RBP18.31■□□□□ 0.52
SQSTM1-215ENST00000514093 B3GALT5-AS1P59052 145 aa18.31■□□□□ 0.52
SQSTM1-215ENST00000514093 PHEXP78562 749 aa18.31■□□□□ 0.52
SQSTM1-215ENST00000514093 PRICKLE4Q2TBC4 344 aa18.31■□□□□ 0.52
SQSTM1-215ENST00000514093 BEX5Q5H9J7 111 aa18.31■□□□□ 0.52
SQSTM1-215ENST00000514093 LIPJQ5W064 366 aa18.31■□□□□ 0.52
SQSTM1-215ENST00000514093 HIPK1Q86Z02 1210 aa18.31■□□□□ 0.52
SQSTM1-215ENST00000514093 UBTD2Q8WUN7 234 aa18.31■□□□□ 0.52
SQSTM1-215ENST00000514093 TMCO6Q96DC7 493 aa18.31■□□□□ 0.52
SQSTM1-215ENST00000514093 ATOH8Q96SQ7 321 aa18.31■□□□□ 0.52
SQSTM1-215ENST00000514093 PINK1Q9BXM7 581 aa18.31■□□□□ 0.52
SQSTM1-215ENST00000514093 MAT2BQ9NZL9 334 aa18.31■□□□□ 0.52
SQSTM1-215ENST00000514093 LAMP3Q9UQV4 416 aa18.31■□□□□ 0.52
SQSTM1-215ENST00000514093 EFCAB8A8MWE9 144 aa18.3■□□□□ 0.52
SQSTM1-215ENST00000514093 H0YIV9 168 aa18.3■□□□□ 0.52
SQSTM1-215ENST00000514093 ACOX3O15254 700 aa18.3■□□□□ 0.52
SQSTM1-215ENST00000514093 NME6O75414 186 aaPredicted RBP18.3■□□□□ 0.52
SQSTM1-215ENST00000514093 SUCLG1P53597 346 aaKnown RBP18.3■□□□□ 0.52
SQSTM1-215ENST00000514093 RAB10P61026 200 aa18.3■□□□□ 0.52
SQSTM1-215ENST00000514093 ZKSCAN8Q15776 578 aaPredicted RBP18.3■□□□□ 0.52
SQSTM1-215ENST00000514093 BCL2A1Q16548 175 aa18.3■□□□□ 0.52
SQSTM1-215ENST00000514093 TRMT12Q53H54 448 aaKnown RBP18.3■□□□□ 0.52
SQSTM1-215ENST00000514093 OR52R1Q8NGF1 315 aa18.3■□□□□ 0.52
SQSTM1-215ENST00000514093 FNDC9Q8TBE3 224 aa18.3■□□□□ 0.52
SQSTM1-215ENST00000514093 PLPPR2Q96GM1 343 aa18.3■□□□□ 0.52
SQSTM1-215ENST00000514093 COL21A1Q96P44 957 aa18.3■□□□□ 0.52
SQSTM1-215ENST00000514093 GPR22Q99680 433 aa18.3■□□□□ 0.52
SQSTM1-215ENST00000514093 PROCRQ9UNN8 238 aa18.3■□□□□ 0.52
SQSTM1-215ENST00000514093 CFL2Q9Y281 166 aa18.3■□□□□ 0.52
SQSTM1-215ENST00000514093 PPP2R2CQ9Y2T4 447 aa18.3■□□□□ 0.52
SQSTM1-215ENST00000514093 RNF11Q9Y3C5 154 aa18.3■□□□□ 0.52
SQSTM1-215ENST00000514093 ABCA1O95477 2261 aa18.29■□□□□ 0.52
SQSTM1-215ENST00000514093 FRG2CA6NGY1 282 aa18.29■□□□□ 0.52
SQSTM1-215ENST00000514093 HS3ST1O14792 307 aa18.29■□□□□ 0.52
SQSTM1-215ENST00000514093 SEC14L5O43304 696 aa18.29■□□□□ 0.52
SQSTM1-215ENST00000514093 CBX7O95931 251 aa18.29■□□□□ 0.52
SQSTM1-215ENST00000514093 KLK1P06870 262 aa18.29■□□□□ 0.52
SQSTM1-215ENST00000514093 CD8BP10966 210 aa18.29■□□□□ 0.52
SQSTM1-215ENST00000514093 PEPDP12955 493 aa18.29■□□□□ 0.52
SQSTM1-215ENST00000514093 DUSP2Q05923 314 aa18.29■□□□□ 0.52
SQSTM1-215ENST00000514093 MAP4K2Q12851 820 aa18.29■□□□□ 0.52
SQSTM1-215ENST00000514093 FAM180BQ6P0A1 224 aa18.29■□□□□ 0.52
SQSTM1-215ENST00000514093 ZBED8Q8IZ13 594 aa18.29■□□□□ 0.52
SQSTM1-215ENST00000514093 ZNF611Q8N823 705 aa18.29■□□□□ 0.52
SQSTM1-215ENST00000514093 WDR20Q8TBZ3 569 aa18.29■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms