RNA–Protein interactions for RNA: ENST00000495039.1

VPS50-219, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 1,115 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-219ENST00000495039 DEFB118Q96PH6 123 aa2.58□□□□□ -2
VPS50-219ENST00000495039 COQ7Q99807 217 aa2.58□□□□□ -2
VPS50-219ENST00000495039 FAM173AQ9BQD7 235 aa2.58□□□□□ -2
VPS50-219ENST00000495039 NACA2Q9H009 215 aa2.58□□□□□ -2
VPS50-219ENST00000495039 THAP9Q9H5L6 903 aa2.58□□□□□ -2
VPS50-219ENST00000495039 RAI14Q9P0K7 980 aa2.58□□□□□ -2
VPS50-219ENST00000495039 LHX3Q9UBR4 397 aa2.58□□□□□ -2
VPS50-219ENST00000495039 KNSTRNQ9Y448 316 aa2.58□□□□□ -2
VPS50-219ENST00000495039 NPC1L1Q9UHC9 1359 aa2.58□□□□□ -2
VPS50-219ENST00000495039 ABCC9O60706 1549 aa2.58□□□□□ -2
VPS50-219ENST00000495039 GON4LQ3T8J9 2241 aa2.57□□□□□ -2
VPS50-219ENST00000495039 IGHV3OR16-12A0A075B7B8 117 aa2.57□□□□□ -2
VPS50-219ENST00000495039 A0A0J9YVX5 310 aa2.57□□□□□ -2
VPS50-219ENST00000495039 WI2-2373I1.2A0A1W2PRP0 233 aa2.57□□□□□ -2
VPS50-219ENST00000495039 ZSCAN5CA6NGD5 496 aaPredicted RBP2.57□□□□□ -2
VPS50-219ENST00000495039 SLC9B1P1A6NJY1 282 aa2.57□□□□□ -2
VPS50-219ENST00000495039 SAP18O00422 153 aaKnown RBP2.57□□□□□ -2
VPS50-219ENST00000495039 TYROBPO43914 113 aa2.57□□□□□ -2
VPS50-219ENST00000495039 RANBP6O60518 1105 aaKnown RBP2.57□□□□□ -2
VPS50-219ENST00000495039 LRP3O75074 770 aa2.57□□□□□ -2
VPS50-219ENST00000495039 PDE5AO76074 875 aa2.57□□□□□ -2
VPS50-219ENST00000495039 ECDO95905 644 aaPredicted RBP2.57□□□□□ -2
VPS50-219ENST00000495039 TMOD1P28289 359 aa2.57□□□□□ -2
VPS50-219ENST00000495039 MAT2AP31153 395 aaKnown RBP2.57□□□□□ -2
VPS50-219ENST00000495039 NUMBP49757 651 aa2.57□□□□□ -2
VPS50-219ENST00000495039 VCPP55072 806 aaKnown RBP2.57□□□□□ -2
VPS50-219ENST00000495039 UCNP55089 124 aa2.57□□□□□ -2
VPS50-219ENST00000495039 RAG2P55895 527 aa2.57□□□□□ -2
VPS50-219ENST00000495039 BNIP1Q12981 228 aa2.57□□□□□ -2
VPS50-219ENST00000495039 NME3Q13232 169 aa2.57□□□□□ -2
VPS50-219ENST00000495039 CD226Q15762 336 aa2.57□□□□□ -2
VPS50-219ENST00000495039 MICAQ29983 383 aa2.57□□□□□ -2
VPS50-219ENST00000495039 DPY19L2P2Q6ZN68 376 aa2.57□□□□□ -2
VPS50-219ENST00000495039 RABEPKQ7Z6M1 372 aa2.57□□□□□ -2
VPS50-219ENST00000495039 ADAMTSL2Q86TH1 951 aa2.57□□□□□ -2
VPS50-219ENST00000495039 LRRC17Q8N6Y2 441 aa2.57□□□□□ -2
VPS50-219ENST00000495039 OR52J3Q8NH60 311 aa2.57□□□□□ -2
VPS50-219ENST00000495039 PHYHIPQ92561 330 aa2.57□□□□□ -2
VPS50-219ENST00000495039 RUFY1Q96T51 708 aa2.57□□□□□ -2
VPS50-219ENST00000495039 CBWD1Q9BRT8 395 aa2.57□□□□□ -2
VPS50-219ENST00000495039 FTHL17Q9BXU8 183 aa2.57□□□□□ -2
VPS50-219ENST00000495039 NLNQ9BYT8 704 aa2.57□□□□□ -2
VPS50-219ENST00000495039 TRIM9Q9C026 710 aa2.57□□□□□ -2
VPS50-219ENST00000495039 FAM124BQ9H5Z6 455 aaPredicted RBP2.57□□□□□ -2
VPS50-219ENST00000495039 ESM1Q9NQ30 184 aa2.57□□□□□ -2
VPS50-219ENST00000495039 TIGARQ9NQ88 270 aa2.57□□□□□ -2
VPS50-219ENST00000495039 IMPAD1Q9NX62 359 aa2.57□□□□□ -2
VPS50-219ENST00000495039 KCNN3Q9UGI6 736 aa2.57□□□□□ -2
VPS50-219ENST00000495039 FETUBQ9UGM5 382 aa2.57□□□□□ -2
VPS50-219ENST00000495039 RSPH14Q9UHP6 348 aa2.57□□□□□ -2
VPS50-219ENST00000495039 KLHDC2Q9Y2U9 406 aa2.57□□□□□ -2
VPS50-219ENST00000495039 RPGRIP1LQ68CZ1 1315 aa2.57□□□□□ -2
VPS50-219ENST00000495039 TRIOBPQ9H2D6 2365 aa2.56□□□□□ -2
VPS50-219ENST00000495039 CCT8L1PA6NM43 557 aa2.56□□□□□ -2
VPS50-219ENST00000495039 EFCAB7A8K855 629 aa2.56□□□□□ -2
VPS50-219ENST00000495039 ZBTB14O43829 449 aa2.56□□□□□ -2
VPS50-219ENST00000495039 BCAS2O75934 225 aaPredicted RBP2.56□□□□□ -2
VPS50-219ENST00000495039 PGK2P07205 417 aa2.56□□□□□ -2
VPS50-219ENST00000495039 PROS1P07225 676 aa2.56□□□□□ -2
VPS50-219ENST00000495039 PVRP15151 417 aa2.56□□□□□ -2
VPS50-219ENST00000495039 FNTAP49354 379 aa2.56□□□□□ -2
VPS50-219ENST00000495039 KRTAP10-10P60014 251 aa2.56□□□□□ -2
VPS50-219ENST00000495039 NOP14P78316 857 aaKnown RBP2.56□□□□□ -2
VPS50-219ENST00000495039 MS4A13Q5J8X5 152 aa2.56□□□□□ -2
VPS50-219ENST00000495039 ZNF530Q6P9A1 599 aaPredicted RBP2.56□□□□□ -2
VPS50-219ENST00000495039 ATRAIDQ6UW56 229 aa2.56□□□□□ -2
VPS50-219ENST00000495039 MIER3Q7Z3K6 550 aa2.56□□□□□ -2
VPS50-219ENST00000495039 TAF8Q7Z7C8 310 aa2.56□□□□□ -2
VPS50-219ENST00000495039 RANBP3LQ86VV4 465 aaPredicted RBP2.56□□□□□ -2
VPS50-219ENST00000495039 NAXDQ8IW45 347 aa2.56□□□□□ -2
VPS50-219ENST00000495039 VN1R17PQ8TDU5 208 aa2.56□□□□□ -2
VPS50-219ENST00000495039 U2AF1L4Q8WU68 220 aaKnown RBP2.56□□□□□ -2
VPS50-219ENST00000495039 PPP1R16AQ96I34 528 aa2.56□□□□□ -2
VPS50-219ENST00000495039 PIWIL1Q96J94 861 aaKnown RBP2.56□□□□□ -2
VPS50-219ENST00000495039 APOOQ9BUR5 198 aa2.56□□□□□ -2
VPS50-219ENST00000495039 TSPY26PQ9H489 355 aa2.56□□□□□ -2
VPS50-219ENST00000495039 ALG9Q9H6U8 611 aa2.56□□□□□ -2
VPS50-219ENST00000495039 CENPMQ9NSP4 180 aa2.56□□□□□ -2
VPS50-219ENST00000495039 PRODH2Q9UF12 536 aa2.56□□□□□ -2
VPS50-219ENST00000495039 MIOXQ9UGB7 285 aa2.56□□□□□ -2
VPS50-219ENST00000495039 MOSPD1Q9UJG1 213 aa2.56□□□□□ -2
VPS50-219ENST00000495039 DNPEPQ9ULA0 475 aa2.56□□□□□ -2
VPS50-219ENST00000495039 SPAG9O60271 1321 aaKnown RBP2.56□□□□□ -2
VPS50-219ENST00000495039 A0A0U1RRA0 63 aa2.55□□□□□ -2
VPS50-219ENST00000495039 ARHGAP42A6NI28 874 aa2.55□□□□□ -2
VPS50-219ENST00000495039 C11orf98E9PRG8 122 aa2.55□□□□□ -2
VPS50-219ENST00000495039 BUB1O43683 1085 aa2.55□□□□□ -2
VPS50-219ENST00000495039 HTATSF1O43719 755 aaKnown RBP2.55□□□□□ -2
VPS50-219ENST00000495039 ZMYM6O95789 1325 aa2.55□□□□□ -2
VPS50-219ENST00000495039 IGHV3-9P01782 118 aa2.55□□□□□ -2
VPS50-219ENST00000495039 GHRP10912 638 aa2.55□□□□□ -2
VPS50-219ENST00000495039 VDRP11473 427 aa2.55□□□□□ -2
VPS50-219ENST00000495039 PGAM2P15259 253 aa2.55□□□□□ -2
VPS50-219ENST00000495039 AHCYP23526 432 aa2.55□□□□□ -2
VPS50-219ENST00000495039 ACP1P24666 158 aa2.55□□□□□ -2
VPS50-219ENST00000495039 ATP6V1E1P36543 226 aa2.55□□□□□ -2
VPS50-219ENST00000495039 MAGEA4P43358 317 aa2.55□□□□□ -2
VPS50-219ENST00000495039 MAGEA9P43362 315 aa2.55□□□□□ -2
VPS50-219ENST00000495039 SGSHP51688 502 aa2.55□□□□□ -2
VPS50-219ENST00000495039 RIPK4P57078 832 aa2.55□□□□□ -2
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms