RNA–Protein interactions for RNA: ENST00000490398.5

COL9A3-214, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 4

Gene COL9A3, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-214ENST00000490398 TMBIM1Q969X1 311 aa16.62■□□□□ 0.25
COL9A3-214ENST00000490398 PGM2Q96G03 612 aa16.62■□□□□ 0.25
COL9A3-214ENST00000490398 METTL2AQ96IZ6 378 aaKnown RBP16.62■□□□□ 0.25
COL9A3-214ENST00000490398 JSRP1Q96MG2 331 aaPredicted RBP16.62■□□□□ 0.25
COL9A3-214ENST00000490398 RILPQ96NA2 401 aa16.62■□□□□ 0.25
COL9A3-214ENST00000490398 DMRTA2Q96SC8 542 aa16.62■□□□□ 0.25
COL9A3-214ENST00000490398 DOHHQ9BU89 302 aa16.62■□□□□ 0.25
COL9A3-214ENST00000490398 ANGPTL4Q9BY76 406 aa16.62■□□□□ 0.25
COL9A3-214ENST00000490398 KCNK9Q9NPC2 374 aa16.62■□□□□ 0.25
COL9A3-214ENST00000490398 SPRR3Q9UBC9 169 aa16.62■□□□□ 0.25
COL9A3-214ENST00000490398 PRODH2Q9UF12 536 aa16.62■□□□□ 0.25
COL9A3-214ENST00000490398 CFL2Q9Y281 166 aa16.62■□□□□ 0.25
COL9A3-214ENST00000490398 NPIPA2E9PIF3 369 aa16.61■□□□□ 0.25
COL9A3-214ENST00000490398 NPIPA3F8WFD2 350 aa16.61■□□□□ 0.25
COL9A3-214ENST00000490398 UPK1AO00322 258 aa16.61■□□□□ 0.25
COL9A3-214ENST00000490398 TP53I11O14683 189 aa16.61■□□□□ 0.25
COL9A3-214ENST00000490398 TO15178 435 aa16.61■□□□□ 0.25
COL9A3-214ENST00000490398 EFNA1P20827 205 aaPredicted RBP16.61■□□□□ 0.25
COL9A3-214ENST00000490398 BGNP21810 368 aa16.61■□□□□ 0.25
COL9A3-214ENST00000490398 NRG3P56975 720 aa16.61■□□□□ 0.25
COL9A3-214ENST00000490398 PLCXD2Q0VAA5 305 aa16.61■□□□□ 0.25
COL9A3-214ENST00000490398 ARHGAP11AQ6P4F7 1023 aa16.61■□□□□ 0.25
COL9A3-214ENST00000490398 RGS9BPQ6ZS82 235 aa16.61■□□□□ 0.25
COL9A3-214ENST00000490398 SAMD14Q8IZD0 417 aaPredicted RBP16.61■□□□□ 0.25
COL9A3-214ENST00000490398 ZNF781Q8N8C0 355 aa16.61■□□□□ 0.25
COL9A3-214ENST00000490398 OR5M9Q8NGP3 310 aa16.61■□□□□ 0.25
COL9A3-214ENST00000490398 HSPBAP1Q96EW2 488 aa16.61■□□□□ 0.25
COL9A3-214ENST00000490398 BTBD9Q96Q07 612 aa16.61■□□□□ 0.25
COL9A3-214ENST00000490398 SORT1Q99523 831 aa16.61■□□□□ 0.25
COL9A3-214ENST00000490398 CCT7Q99832 543 aa16.61■□□□□ 0.25
COL9A3-214ENST00000490398 C1orf50Q9BV19 199 aa16.61■□□□□ 0.25
COL9A3-214ENST00000490398 SLC6A15Q9H2J7 730 aa16.61■□□□□ 0.25
COL9A3-214ENST00000490398 PNPLA3Q9NST1 481 aa16.61■□□□□ 0.25
COL9A3-214ENST00000490398 SUCOQ9UBS9 1254 aaKnown RBP16.61■□□□□ 0.25
COL9A3-214ENST00000490398 WBP11Q9Y2W2 641 aaKnown RBP16.61■□□□□ 0.25
COL9A3-214ENST00000490398 ZNF407Q9C0G0 2248 aa16.6■□□□□ 0.25
COL9A3-214ENST00000490398 ANKRD33BA6NCL7 494 aa16.6■□□□□ 0.25
COL9A3-214ENST00000490398 FRG2CA6NGY1 282 aa16.6■□□□□ 0.25
COL9A3-214ENST00000490398 C17orf51A8MQB3 221 aa16.6■□□□□ 0.25
COL9A3-214ENST00000490398 CAPN14A8MX76 684 aa16.6■□□□□ 0.25
COL9A3-214ENST00000490398 PRRG2O14669 202 aa16.6■□□□□ 0.25
COL9A3-214ENST00000490398 ERN1O75460 977 aaKnown RBP16.6■□□□□ 0.25
COL9A3-214ENST00000490398 PSMG1O95456 288 aa16.6■□□□□ 0.25
COL9A3-214ENST00000490398 SERPINE1P05121 402 aa16.6■□□□□ 0.25
COL9A3-214ENST00000490398 ESRRAP11474 423 aaPredicted RBP16.6■□□□□ 0.25
COL9A3-214ENST00000490398 TRPC1P48995 793 aa16.6■□□□□ 0.25
COL9A3-214ENST00000490398 CASP6P55212 293 aa16.6■□□□□ 0.25
COL9A3-214ENST00000490398 WDR4P57081 412 aaKnown RBP16.6■□□□□ 0.25
COL9A3-214ENST00000490398 PDE7AQ13946 482 aa16.6■□□□□ 0.25
COL9A3-214ENST00000490398 C6orf136Q5SQH8 315 aa16.6■□□□□ 0.25
COL9A3-214ENST00000490398 SLC34A3Q8N130 599 aa16.6■□□□□ 0.25
COL9A3-214ENST00000490398 PPP1R14CQ8TAE6 165 aa16.6■□□□□ 0.25
COL9A3-214ENST00000490398 ERP27Q96DN0 273 aa16.6■□□□□ 0.25
COL9A3-214ENST00000490398 ELP4Q96EB1 424 aa16.6■□□□□ 0.25
COL9A3-214ENST00000490398 PPP1R36Q96LQ0 422 aa16.6■□□□□ 0.25
COL9A3-214ENST00000490398 GNRHR2Q96P88 292 aa16.6■□□□□ 0.25
COL9A3-214ENST00000490398 REEP4Q9H6H4 257 aa16.6■□□□□ 0.25
COL9A3-214ENST00000490398 GALNT9Q9HCQ5 603 aa16.6■□□□□ 0.25
COL9A3-214ENST00000490398 BOKQ9UMX3 212 aaPredicted RBP16.6■□□□□ 0.25
COL9A3-214ENST00000490398 C19orf53Q9UNZ5 99 aaPredicted RBP16.6■□□□□ 0.25
COL9A3-214ENST00000490398 NCKAP5O14513 1909 aa16.6■□□□□ 0.25
COL9A3-214ENST00000490398 CSMD1Q96PZ7 3565 aa16.6■□□□□ 0.25
COL9A3-214ENST00000490398 A0A1B0GVC2 190 aa16.59■□□□□ 0.25
COL9A3-214ENST00000490398 PLOD2O00469 737 aa16.59■□□□□ 0.25
COL9A3-214ENST00000490398 ACOX3O15254 700 aa16.59■□□□□ 0.25
COL9A3-214ENST00000490398 TM9SF1O15321 606 aa16.59■□□□□ 0.25
COL9A3-214ENST00000490398 BIRC5O15392 142 aa16.59■□□□□ 0.25
COL9A3-214ENST00000490398 TSPAN2O60636 221 aa16.59■□□□□ 0.25
COL9A3-214ENST00000490398 BCAS2O75934 225 aaPredicted RBP16.59■□□□□ 0.25
COL9A3-214ENST00000490398 HSPA4LO95757 839 aa16.59■□□□□ 0.25
COL9A3-214ENST00000490398 NAGAP17050 411 aa16.59■□□□□ 0.25
COL9A3-214ENST00000490398 NTSP30990 170 aa16.59■□□□□ 0.25
COL9A3-214ENST00000490398 DCTP40126 519 aa16.59■□□□□ 0.25
COL9A3-214ENST00000490398 CDK9P50750 372 aaKnown RBP16.59■□□□□ 0.25
COL9A3-214ENST00000490398 ABCE1P61221 599 aaKnown RBP16.59■□□□□ 0.25
COL9A3-214ENST00000490398 DCAF7P61962 342 aa16.59■□□□□ 0.25
COL9A3-214ENST00000490398 PSG6Q00889 435 aa16.59■□□□□ 0.25
COL9A3-214ENST00000490398 ZNF155Q12901 538 aaPredicted RBP16.59■□□□□ 0.25
COL9A3-214ENST00000490398 PTGR1Q14914 329 aa16.59■□□□□ 0.25
COL9A3-214ENST00000490398 SLC10A1Q14973 349 aa16.59■□□□□ 0.25
COL9A3-214ENST00000490398 PDCD2Q16342 344 aaPredicted RBP16.59■□□□□ 0.25
COL9A3-214ENST00000490398 NUP54Q7Z3B4 507 aa16.59■□□□□ 0.25
COL9A3-214ENST00000490398 SLC44A2Q8IWA5 706 aaPredicted RBP16.59■□□□□ 0.25
COL9A3-214ENST00000490398 OR2L13Q8N349 312 aa16.59■□□□□ 0.25
COL9A3-214ENST00000490398 LIX1Q8N485 282 aa16.59■□□□□ 0.25
COL9A3-214ENST00000490398 ANKRD42Q8N9B4 389 aa16.59■□□□□ 0.25
COL9A3-214ENST00000490398 SECISBP2Q96T21 854 aaKnown RBP16.59■□□□□ 0.25
COL9A3-214ENST00000490398 SH3BP4Q9P0V3 963 aa16.59■□□□□ 0.25
COL9A3-214ENST00000490398 TMED5Q9Y3A6 229 aa16.59■□□□□ 0.25
COL9A3-214ENST00000490398 ACTL7BQ9Y614 415 aa16.59■□□□□ 0.25
COL9A3-214ENST00000490398 ADGRG4Q8IZF6 3080 aa16.58■□□□□ 0.24
COL9A3-214ENST00000490398 A0A087WV62 115 aa16.58■□□□□ 0.24
COL9A3-214ENST00000490398 B4DXG7 233 aa16.58■□□□□ 0.24
COL9A3-214ENST00000490398 GNB5O14775 395 aa16.58■□□□□ 0.24
COL9A3-214ENST00000490398 PDPK1O15530 556 aa16.58■□□□□ 0.24
COL9A3-214ENST00000490398 TBX19O60806 448 aa16.58■□□□□ 0.24
COL9A3-214ENST00000490398 REM1O75628 298 aa16.58■□□□□ 0.24
COL9A3-214ENST00000490398 TMED10P49755 219 aaKnown RBP16.58■□□□□ 0.24
COL9A3-214ENST00000490398 HSPB3Q12988 150 aa16.58■□□□□ 0.24
COL9A3-214ENST00000490398 GXYLT1Q4G148 440 aa16.58■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 47.6 ms