RNA–Protein interactions for RNA: ENST00000488454.5

SKA1-204, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 3 BASIC

Gene SKA1, Length 669 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-204ENST00000488454 WWP2O00308 870 aa9.54□□□□□ -0.88
SKA1-204ENST00000488454 ERN1O75460 977 aaKnown RBP9.54□□□□□ -0.88
SKA1-204ENST00000488454 SOX30O94993 753 aa9.54□□□□□ -0.88
SKA1-204ENST00000488454 KCNH1O95259 989 aa9.54□□□□□ -0.88
SKA1-204ENST00000488454 KRT75O95678 551 aa9.54□□□□□ -0.88
SKA1-204ENST00000488454 KRT16P08779 473 aa9.54□□□□□ -0.88
SKA1-204ENST00000488454 CAPN3P20807 821 aa9.54□□□□□ -0.88
SKA1-204ENST00000488454 ZFP36L2P47974 494 aaKnown RBP9.54□□□□□ -0.88
SKA1-204ENST00000488454 EMDP50402 254 aa9.54□□□□□ -0.88
SKA1-204ENST00000488454 NR0B1P51843 470 aaKnown RBP9.54□□□□□ -0.88
SKA1-204ENST00000488454 POLE2P56282 527 aa9.54□□□□□ -0.88
SKA1-204ENST00000488454 NRG3P56975 720 aa9.54□□□□□ -0.88
SKA1-204ENST00000488454 ZNF155Q12901 538 aaPredicted RBP9.54□□□□□ -0.88
SKA1-204ENST00000488454 EBPQ15125 230 aaKnown RBP9.54□□□□□ -0.88
SKA1-204ENST00000488454 ACER2Q5QJU3 275 aa9.54□□□□□ -0.88
SKA1-204ENST00000488454 FHL5Q5TD97 284 aa9.54□□□□□ -0.88
SKA1-204ENST00000488454 B3GNTL1Q67FW5 361 aaPredicted RBP9.54□□□□□ -0.88
SKA1-204ENST00000488454 FCRLBQ6BAA4 426 aa9.54□□□□□ -0.88
SKA1-204ENST00000488454 TCTN3Q6NUS6 607 aa9.54□□□□□ -0.88
SKA1-204ENST00000488454 H3F3CQ6NXT2 135 aa9.54□□□□□ -0.88
SKA1-204ENST00000488454 ZCCHC12Q6PEW1 402 aa9.54□□□□□ -0.88
SKA1-204ENST00000488454 SLC2A7Q6PXP3 512 aa9.54□□□□□ -0.88
SKA1-204ENST00000488454 ANGPTL8Q6UXH0 198 aa9.54□□□□□ -0.88
SKA1-204ENST00000488454 LINC00696Q6ZRV3 163 aa9.54□□□□□ -0.88
SKA1-204ENST00000488454 C6orf120Q7Z4R8 191 aa9.54□□□□□ -0.88
SKA1-204ENST00000488454 C9orf40Q8IXQ3 194 aa9.54□□□□□ -0.88
SKA1-204ENST00000488454 LGI4Q8N135 537 aa9.54□□□□□ -0.88
SKA1-204ENST00000488454 TMEM156Q8N614 296 aa9.54□□□□□ -0.88
SKA1-204ENST00000488454 AMER2Q8N7J2 671 aa9.54□□□□□ -0.88
SKA1-204ENST00000488454 CDRT4Q8N9R6 151 aa9.54□□□□□ -0.88
SKA1-204ENST00000488454 PCYOX1LQ8NBM8 494 aa9.54□□□□□ -0.88
SKA1-204ENST00000488454 GOT1L1Q8NHS2 421 aaPredicted RBP9.54□□□□□ -0.88
SKA1-204ENST00000488454 RP9Q8TA86 221 aaKnown RBP9.54□□□□□ -0.88
SKA1-204ENST00000488454 SLC22A8Q8TCC7 542 aa9.54□□□□□ -0.88
SKA1-204ENST00000488454 SFXN5Q8TD22 340 aa9.54□□□□□ -0.88
SKA1-204ENST00000488454 GTF2H4Q92759 462 aa9.54□□□□□ -0.88
SKA1-204ENST00000488454 TP53INP1Q96A56 240 aa9.54□□□□□ -0.88
SKA1-204ENST00000488454 FAM120BQ96EK7 910 aaKnown RBP9.54□□□□□ -0.88
SKA1-204ENST00000488454 CRELD1Q96HD1 420 aa9.54□□□□□ -0.88
SKA1-204ENST00000488454 MS4A4EQ96PG1 132 aa9.54□□□□□ -0.88
SKA1-204ENST00000488454 SLC35A5Q9BS91 424 aa9.54□□□□□ -0.88
SKA1-204ENST00000488454 CCDC106Q9BWC9 280 aa9.54□□□□□ -0.88
SKA1-204ENST00000488454 WWTR1Q9GZV5 400 aa9.54□□□□□ -0.88
SKA1-204ENST00000488454 CXorf36Q9H7Y0 433 aa9.54□□□□□ -0.88
SKA1-204ENST00000488454 ANKRA2Q9H9E1 313 aa9.54□□□□□ -0.88
SKA1-204ENST00000488454 EQTNQ9NQ60 294 aa9.54□□□□□ -0.88
SKA1-204ENST00000488454 SIRT3Q9NTG7 399 aaPredicted RBP9.54□□□□□ -0.88
SKA1-204ENST00000488454 NTMQ9P121 344 aa9.54□□□□□ -0.88
SKA1-204ENST00000488454 ZNF223Q9UK11 482 aaPredicted RBP9.54□□□□□ -0.88
SKA1-204ENST00000488454 YARS2Q9Y2Z4 477 aaKnown RBP9.54□□□□□ -0.88
SKA1-204ENST00000488454 OR10H1Q9Y4A9 318 aa9.54□□□□□ -0.88
SKA1-204ENST00000488454 ZFHX4Q86UP3 3567 aa9.54□□□□□ -0.88
SKA1-204ENST00000488454 CELSR3Q9NYQ7 3312 aa9.53□□□□□ -0.88
SKA1-204ENST00000488454 CHD8Q9HCK8 2581 aa9.53□□□□□ -0.88
SKA1-204ENST00000488454 A0A096LPI6 279 aa9.53□□□□□ -0.88
SKA1-204ENST00000488454 CAPN14A8MX76 684 aa9.53□□□□□ -0.88
SKA1-204ENST00000488454 ACOX3O15254 700 aa9.53□□□□□ -0.88
SKA1-204ENST00000488454 PRKNO60260 465 aaPredicted RBP9.53□□□□□ -0.88
SKA1-204ENST00000488454 ITGA10O75578 1167 aa9.53□□□□□ -0.88
SKA1-204ENST00000488454 CEACAM4O75871 244 aa9.53□□□□□ -0.88
SKA1-204ENST00000488454 CLPSP04118 112 aa9.53□□□□□ -0.88
SKA1-204ENST00000488454 HMGN2P05204 90 aaKnown RBP9.53□□□□□ -0.88
SKA1-204ENST00000488454 GSNP06396 782 aa9.53□□□□□ -0.88
SKA1-204ENST00000488454 ALOX5P09917 674 aa9.53□□□□□ -0.88
SKA1-204ENST00000488454 ZCCHC18P0CG32 403 aa9.53□□□□□ -0.88
SKA1-204ENST00000488454 SFTPCP11686 197 aa9.53□□□□□ -0.88
SKA1-204ENST00000488454 DRD5P21918 477 aa9.53□□□□□ -0.88
SKA1-204ENST00000488454 MATN1P21941 496 aa9.53□□□□□ -0.88
SKA1-204ENST00000488454 GABRA3P34903 492 aa9.53□□□□□ -0.88
SKA1-204ENST00000488454 KRT20P35900 424 aa9.53□□□□□ -0.88
SKA1-204ENST00000488454 CASRP41180 1078 aa9.53□□□□□ -0.88
SKA1-204ENST00000488454 PPICP45877 212 aa9.53□□□□□ -0.88
SKA1-204ENST00000488454 ANXA11P50995 505 aaKnown RBP9.53□□□□□ -0.88
SKA1-204ENST00000488454 SSR4P51571 173 aa9.53□□□□□ -0.88
SKA1-204ENST00000488454 MLF1P58340 268 aa9.53□□□□□ -0.88
SKA1-204ENST00000488454 PSPHP78330 225 aa9.53□□□□□ -0.88
SKA1-204ENST00000488454 CBX1P83916 185 aa9.53□□□□□ -0.88
SKA1-204ENST00000488454 OC90Q02509 493 aaPredicted RBP9.53□□□□□ -0.88
SKA1-204ENST00000488454 NFYCQ13952 458 aa9.53□□□□□ -0.88
SKA1-204ENST00000488454 LASP1Q14847 261 aaKnown RBP9.53□□□□□ -0.88
SKA1-204ENST00000488454 PIGGQ5H8A4 983 aa9.53□□□□□ -0.88
SKA1-204ENST00000488454 SNX32Q86XE0 403 aa9.53□□□□□ -0.88
SKA1-204ENST00000488454 SLC44A2Q8IWA5 706 aaPredicted RBP9.53□□□□□ -0.88
SKA1-204ENST00000488454 SLC15A4Q8N697 577 aa9.53□□□□□ -0.88
SKA1-204ENST00000488454 HORMAD2Q8N7B1 307 aa9.53□□□□□ -0.88
SKA1-204ENST00000488454 SIMC1Q8NDZ2 872 aa9.53□□□□□ -0.88
SKA1-204ENST00000488454 C17orf47Q8NEP4 570 aa9.53□□□□□ -0.88
SKA1-204ENST00000488454 OR5AK3PQ8NH89 298 aa9.53□□□□□ -0.88
SKA1-204ENST00000488454 GPR151Q8TDV0 419 aa9.53□□□□□ -0.88
SKA1-204ENST00000488454 ASB15Q8WXK1 588 aa9.53□□□□□ -0.88
SKA1-204ENST00000488454 PSMF1Q92530 271 aa9.53□□□□□ -0.88
SKA1-204ENST00000488454 SLC9A6Q92581 669 aa9.53□□□□□ -0.88
SKA1-204ENST00000488454 JADE3Q92613 823 aa9.53□□□□□ -0.88
SKA1-204ENST00000488454 LCORQ96JN0 433 aaPredicted RBP9.53□□□□□ -0.88
SKA1-204ENST00000488454 ITPAQ9BY32 194 aa9.53□□□□□ -0.88
SKA1-204ENST00000488454 ACTRT3Q9BYD9 372 aa9.53□□□□□ -0.88
SKA1-204ENST00000488454 MYLK2Q9H1R3 596 aa9.53□□□□□ -0.88
SKA1-204ENST00000488454 ZNF552Q9H707 407 aaPredicted RBP9.53□□□□□ -0.88
SKA1-204ENST00000488454 LIN28AQ9H9Z2 209 aaKnown RBP9.53□□□□□ -0.88
SKA1-204ENST00000488454 FOLH1BQ9HBA9 442 aa9.53□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms