RNA–Protein interactions for RNA: ENST00000486665.5

HDAC6-229, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 598 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-229ENST00000486665 TPT1P8Q9HAU6 139 aa11.86□□□□□ -0.51
HDAC6-229ENST00000486665 GID8Q9NWU2 228 aa11.86□□□□□ -0.51
HDAC6-229ENST00000486665 NIPSNAP3AQ9UFN0 247 aaPredicted RBP11.86□□□□□ -0.51
HDAC6-229ENST00000486665 DTX4Q9Y2E6 619 aa11.86□□□□□ -0.51
HDAC6-229ENST00000486665 CLIC1O00299 241 aa11.85□□□□□ -0.51
HDAC6-229ENST00000486665 BCAS2O75934 225 aaPredicted RBP11.85□□□□□ -0.51
HDAC6-229ENST00000486665 NPPAP01160 153 aa11.85□□□□□ -0.51
HDAC6-229ENST00000486665 HMGN2P05204 90 aaKnown RBP11.85□□□□□ -0.51
HDAC6-229ENST00000486665 CHI3L1P36222 383 aaPredicted RBP11.85□□□□□ -0.51
HDAC6-229ENST00000486665 CPOXP36551 454 aa11.85□□□□□ -0.51
HDAC6-229ENST00000486665 MVDP53602 400 aa11.85□□□□□ -0.51
HDAC6-229ENST00000486665 PSME3P61289 254 aa11.85□□□□□ -0.51
HDAC6-229ENST00000486665 RPS26P62854 115 aaKnown RBP11.85□□□□□ -0.51
HDAC6-229ENST00000486665 PRR5P85299 388 aa11.85□□□□□ -0.51
HDAC6-229ENST00000486665 TLE1Q04724 770 aa11.85□□□□□ -0.51
HDAC6-229ENST00000486665 CDC20Q12834 499 aa11.85□□□□□ -0.51
HDAC6-229ENST00000486665 TP53BP2Q13625 1128 aa11.85□□□□□ -0.51
HDAC6-229ENST00000486665 LASP1Q14847 261 aaKnown RBP11.85□□□□□ -0.51
HDAC6-229ENST00000486665 EXT1Q16394 746 aa11.85□□□□□ -0.51
HDAC6-229ENST00000486665 BTBD16Q32M84 506 aa11.85□□□□□ -0.51
HDAC6-229ENST00000486665 CRTC2Q53ET0 693 aaPredicted RBP11.85□□□□□ -0.51
HDAC6-229ENST00000486665 COX20Q5RI15 118 aa11.85□□□□□ -0.51
HDAC6-229ENST00000486665 NANOGP8Q6NSW7 305 aa11.85□□□□□ -0.51
HDAC6-229ENST00000486665 RNF111Q6ZNA4 994 aa11.85□□□□□ -0.51
HDAC6-229ENST00000486665 SZRD1Q7Z422 152 aa11.85□□□□□ -0.51
HDAC6-229ENST00000486665 RNF130Q86XS8 419 aa11.85□□□□□ -0.51
HDAC6-229ENST00000486665 C9orf40Q8IXQ3 194 aa11.85□□□□□ -0.51
HDAC6-229ENST00000486665 C10orf111Q8N326 155 aa11.85□□□□□ -0.51
HDAC6-229ENST00000486665 TRIML2Q8N7C3 387 aa11.85□□□□□ -0.51
HDAC6-229ENST00000486665 ZSCAN1Q8NBB4 408 aa11.85□□□□□ -0.51
HDAC6-229ENST00000486665 RBM15BQ8NDT2 890 aaKnown RBP11.85□□□□□ -0.51
HDAC6-229ENST00000486665 OR56A1Q8NGH5 318 aa11.85□□□□□ -0.51
HDAC6-229ENST00000486665 MOAP1Q96BY2 351 aa11.85□□□□□ -0.51
HDAC6-229ENST00000486665 ROPN1LQ96C74 230 aa11.85□□□□□ -0.51
HDAC6-229ENST00000486665 SLC7A6OSQ96CW6 309 aaPredicted RBP11.85□□□□□ -0.51
HDAC6-229ENST00000486665 OTUB1Q96FW1 271 aaPredicted RBP11.85□□□□□ -0.51
HDAC6-229ENST00000486665 VMP1Q96GC9 406 aa11.85□□□□□ -0.51
HDAC6-229ENST00000486665 ART5Q96L15 291 aa11.85□□□□□ -0.51
HDAC6-229ENST00000486665 IP6K3Q96PC2 410 aa11.85□□□□□ -0.51
HDAC6-229ENST00000486665 NANOGQ9H9S0 305 aa11.85□□□□□ -0.51
HDAC6-229ENST00000486665 LIN28AQ9H9Z2 209 aaKnown RBP11.85□□□□□ -0.51
HDAC6-229ENST00000486665 FOLH1BQ9HBA9 442 aa11.85□□□□□ -0.51
HDAC6-229ENST00000486665 MMP25Q9NPA2 562 aa11.85□□□□□ -0.51
HDAC6-229ENST00000486665 EQTNQ9NQ60 294 aa11.85□□□□□ -0.51
HDAC6-229ENST00000486665 TRBV11-1A0A0K0K1C0 115 aa11.84□□□□□ -0.51
HDAC6-229ENST00000486665 ARGFXA6NJG6 315 aa11.84□□□□□ -0.51
HDAC6-229ENST00000486665 TMEM200CA6NKL6 621 aa11.84□□□□□ -0.51
HDAC6-229ENST00000486665 PRAMEF2O60811 474 aa11.84□□□□□ -0.51
HDAC6-229ENST00000486665 COQ9O75208 318 aa11.84□□□□□ -0.51
HDAC6-229ENST00000486665 KRT75O95678 551 aa11.84□□□□□ -0.51
HDAC6-229ENST00000486665 KRT16P08779 473 aa11.84□□□□□ -0.51
HDAC6-229ENST00000486665 ACP2P11117 423 aa11.84□□□□□ -0.51
HDAC6-229ENST00000486665 ITGAMP11215 1152 aa11.84□□□□□ -0.51
HDAC6-229ENST00000486665 MATN1P21941 496 aa11.84□□□□□ -0.51
HDAC6-229ENST00000486665 SLC6A2P23975 617 aa11.84□□□□□ -0.51
HDAC6-229ENST00000486665 MAP3K8P41279 467 aa11.84□□□□□ -0.51
HDAC6-229ENST00000486665 MAN2A2P49641 1150 aa11.84□□□□□ -0.51
HDAC6-229ENST00000486665 CLCN2P51788 898 aa11.84□□□□□ -0.51
HDAC6-229ENST00000486665 MNAT1P51948 309 aa11.84□□□□□ -0.51
HDAC6-229ENST00000486665 MTPNP58546 118 aa11.84□□□□□ -0.51
HDAC6-229ENST00000486665 RNF4P78317 190 aa11.84□□□□□ -0.51
HDAC6-229ENST00000486665 MXRA7P84157 204 aa11.84□□□□□ -0.51
HDAC6-229ENST00000486665 CHAF1BQ13112 559 aa11.84□□□□□ -0.51
HDAC6-229ENST00000486665 DEFB109BQ30KR1 87 aa11.84□□□□□ -0.51
HDAC6-229ENST00000486665 RABL3Q5HYI8 236 aa11.84□□□□□ -0.51
HDAC6-229ENST00000486665 DCAF10Q5QP82 559 aa11.84□□□□□ -0.51
HDAC6-229ENST00000486665 EXOSC6Q5RKV6 272 aaKnown RBP11.84□□□□□ -0.51
HDAC6-229ENST00000486665 DDX59Q5T1V6 619 aaKnown RBP eCLIP11.84□□□□□ -0.51
HDAC6-229ENST00000486665 MFSD12Q6NUT3 480 aa11.84□□□□□ -0.51
HDAC6-229ENST00000486665 HSDL2Q6YN16 418 aa11.84□□□□□ -0.51
HDAC6-229ENST00000486665 C16orf47Q6ZP98 133 aaPredicted RBP11.84□□□□□ -0.51
HDAC6-229ENST00000486665 FBXO30Q8TB52 745 aa11.84□□□□□ -0.51
HDAC6-229ENST00000486665 THAP4Q8WY91 577 aa11.84□□□□□ -0.51
HDAC6-229ENST00000486665 HOXB13Q92826 284 aaPredicted RBP11.84□□□□□ -0.51
HDAC6-229ENST00000486665 ADIPOR1Q96A54 375 aa11.84□□□□□ -0.51
HDAC6-229ENST00000486665 TMEM125Q96AQ2 219 aa11.84□□□□□ -0.51
HDAC6-229ENST00000486665 SLC35A4Q96G79 324 aa11.84□□□□□ -0.51
HDAC6-229ENST00000486665 VPS50Q96JG6 964 aa11.84□□□□□ -0.51
HDAC6-229ENST00000486665 SLC35G5Q96KT7 338 aa11.84□□□□□ -0.51
HDAC6-229ENST00000486665 VSTM2LQ96N03 204 aa11.84□□□□□ -0.51
HDAC6-229ENST00000486665 MS4A4EQ96PG1 132 aa11.84□□□□□ -0.51
HDAC6-229ENST00000486665 HOPXQ9BPY8 73 aaPredicted RBP11.84□□□□□ -0.51
HDAC6-229ENST00000486665 ITPAQ9BY32 194 aa11.84□□□□□ -0.51
HDAC6-229ENST00000486665 SLC25A18Q9H1K4 315 aa11.84□□□□□ -0.51
HDAC6-229ENST00000486665 CMTM6Q9NX76 183 aa11.84□□□□□ -0.51
HDAC6-229ENST00000486665 TAS2R1Q9NYW7 299 aa11.84□□□□□ -0.51
HDAC6-229ENST00000486665 GMPR2Q9P2T1 348 aaKnown RBP11.84□□□□□ -0.51
HDAC6-229ENST00000486665 COPS7AQ9UBW8 275 aa11.84□□□□□ -0.51
HDAC6-229ENST00000486665 PRODH2Q9UF12 536 aa11.84□□□□□ -0.51
HDAC6-229ENST00000486665 GMEB1Q9Y692 573 aa11.84□□□□□ -0.51
HDAC6-229ENST00000486665 KCNE3Q9Y6H6 103 aa11.84□□□□□ -0.51
HDAC6-229ENST00000486665 NUP214P35658 2090 aaPredicted RBP11.83□□□□□ -0.51
HDAC6-229ENST00000486665 OR6C76A6NM76 312 aa11.83□□□□□ -0.52
HDAC6-229ENST00000486665 ZFAND5O76080 213 aa11.83□□□□□ -0.52
HDAC6-229ENST00000486665 SERPINA7P05543 415 aa11.83□□□□□ -0.52
HDAC6-229ENST00000486665 ICAM2P13598 275 aa11.83□□□□□ -0.52
HDAC6-229ENST00000486665 ETFAP13804 333 aa11.83□□□□□ -0.52
HDAC6-229ENST00000486665 CORO7P57737 925 aa11.83□□□□□ -0.52
HDAC6-229ENST00000486665 ZNF155Q12901 538 aaPredicted RBP11.83□□□□□ -0.52
HDAC6-229ENST00000486665 MYBPC3Q14896 1274 aa11.83□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms