RNA–Protein interactions for RNA: ENST00000476903.1

CCDC88A-213, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 419 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-213ENST00000476903 A0A1W2PR48 441 aa6.27□□□□□ -1.41
CCDC88A-213ENST00000476903 GLOD5A6NK44 160 aa6.27□□□□□ -1.41
CCDC88A-213ENST00000476903 OR6C76A6NM76 312 aa6.27□□□□□ -1.41
CCDC88A-213ENST00000476903 A8MT66 165 aa6.27□□□□□ -1.41
CCDC88A-213ENST00000476903 E9PLN8 166 aa6.27□□□□□ -1.41
CCDC88A-213ENST00000476903 RIPK2O43353 540 aa6.27□□□□□ -1.41
CCDC88A-213ENST00000476903 HS6ST1O60243 411 aa6.27□□□□□ -1.41
CCDC88A-213ENST00000476903 AIFM1O95831 613 aa6.27□□□□□ -1.41
CCDC88A-213ENST00000476903 GBAP04062 536 aa6.27□□□□□ -1.41
CCDC88A-213ENST00000476903 IGKV3-11P04433 115 aa6.27□□□□□ -1.41
CCDC88A-213ENST00000476903 P04436 131 aa6.27□□□□□ -1.41
CCDC88A-213ENST00000476903 RPS17P08708 135 aaKnown RBP6.27□□□□□ -1.41
CCDC88A-213ENST00000476903 TAC1P20366 129 aa6.27□□□□□ -1.41
CCDC88A-213ENST00000476903 CD247P20963 164 aa6.27□□□□□ -1.41
CCDC88A-213ENST00000476903 CNR1P21554 472 aa6.27□□□□□ -1.41
CCDC88A-213ENST00000476903 PIK3R1P27986 724 aa6.27□□□□□ -1.41
CCDC88A-213ENST00000476903 HTR1EP28566 365 aa6.27□□□□□ -1.41
CCDC88A-213ENST00000476903 GALNSP34059 522 aa6.27□□□□□ -1.41
CCDC88A-213ENST00000476903 PTGS2P35354 604 aa6.27□□□□□ -1.41
CCDC88A-213ENST00000476903 DEKP35659 375 aaKnown RBP6.27□□□□□ -1.41
CCDC88A-213ENST00000476903 PPIAP62937 165 aaKnown RBP6.27□□□□□ -1.41
CCDC88A-213ENST00000476903 HERVK_113P63132 956 aa6.27□□□□□ -1.41
CCDC88A-213ENST00000476903 ERVK-8P63133 956 aa6.27□□□□□ -1.41
CCDC88A-213ENST00000476903 ADORA2A-AS1P86434 159 aa6.27□□□□□ -1.41
CCDC88A-213ENST00000476903 HSF1Q00613 529 aa6.27□□□□□ -1.41
CCDC88A-213ENST00000476903 PLGLB1Q02325 96 aa6.27□□□□□ -1.41
CCDC88A-213ENST00000476903 TBL3Q12788 808 aaKnown RBP6.27□□□□□ -1.41
CCDC88A-213ENST00000476903 ASPHQ12797 758 aa6.27□□□□□ -1.41
CCDC88A-213ENST00000476903 TRAF3Q13114 568 aa6.27□□□□□ -1.41
CCDC88A-213ENST00000476903 CMPK2Q5EBM0 449 aa6.27□□□□□ -1.41
CCDC88A-213ENST00000476903 PIGGQ5H8A4 983 aa6.27□□□□□ -1.41
CCDC88A-213ENST00000476903 TEX35Q5T0J7 233 aa6.27□□□□□ -1.41
CCDC88A-213ENST00000476903 NDUFAF5Q5TEU4 345 aa6.27□□□□□ -1.41
CCDC88A-213ENST00000476903 SP5Q6BEB4 398 aaPredicted RBP6.27□□□□□ -1.41
CCDC88A-213ENST00000476903 ARHGAP11AQ6P4F7 1023 aa6.27□□□□□ -1.41
CCDC88A-213ENST00000476903 TIFABQ6ZNK6 161 aa6.27□□□□□ -1.41
CCDC88A-213ENST00000476903 SLC29A4Q7RTT9 530 aa6.27□□□□□ -1.41
CCDC88A-213ENST00000476903 PAGE2Q7Z2X7 111 aa6.27□□□□□ -1.41
CCDC88A-213ENST00000476903 SLC22A16Q86VW1 577 aa6.27□□□□□ -1.41
CCDC88A-213ENST00000476903 C9orf40Q8IXQ3 194 aa6.27□□□□□ -1.41
CCDC88A-213ENST00000476903 DND1Q8IYX4 353 aaKnown RBP6.27□□□□□ -1.41
CCDC88A-213ENST00000476903 SLC15A4Q8N697 577 aa6.27□□□□□ -1.41
CCDC88A-213ENST00000476903 MYRIPQ8NFW9 859 aa6.27□□□□□ -1.41
CCDC88A-213ENST00000476903 OR2M7Q8NG81 312 aa6.27□□□□□ -1.41
CCDC88A-213ENST00000476903 OR4F6Q8NGB9 312 aa6.27□□□□□ -1.41
CCDC88A-213ENST00000476903 OR52N2Q8NGI0 321 aa6.27□□□□□ -1.41
CCDC88A-213ENST00000476903 FAM57AQ8TBR7 257 aa6.27□□□□□ -1.41
CCDC88A-213ENST00000476903 AGAP11Q8TF27 550 aa6.27□□□□□ -1.41
CCDC88A-213ENST00000476903 ZNF483Q8TF39 744 aaPredicted RBP6.27□□□□□ -1.41
CCDC88A-213ENST00000476903 PHF10Q8WUB8 498 aaKnown RBP6.27□□□□□ -1.41
CCDC88A-213ENST00000476903 RIT1Q92963 219 aa6.27□□□□□ -1.41
CCDC88A-213ENST00000476903 PPWD1Q96BP3 646 aaKnown RBP6.27□□□□□ -1.41
CCDC88A-213ENST00000476903 GAL3ST4Q96RP7 486 aa6.27□□□□□ -1.41
CCDC88A-213ENST00000476903 VKORC1Q9BQB6 163 aa6.27□□□□□ -1.41
CCDC88A-213ENST00000476903 FAM173AQ9BQD7 235 aa6.27□□□□□ -1.41
CCDC88A-213ENST00000476903 ERVK-6Q9BXR3 956 aa6.27□□□□□ -1.41
CCDC88A-213ENST00000476903 BRF2Q9HAW0 419 aa6.27□□□□□ -1.41
CCDC88A-213ENST00000476903 SACM1LQ9NTJ5 587 aa6.27□□□□□ -1.41
CCDC88A-213ENST00000476903 DEPPQ9NTK1 212 aa6.27□□□□□ -1.41
CCDC88A-213ENST00000476903 ADAM29Q9UKF5 820 aa6.27□□□□□ -1.41
CCDC88A-213ENST00000476903 ERVK-19Q9WJR5 959 aa6.27□□□□□ -1.41
CCDC88A-213ENST00000476903 CENPEQ02224 2701 aa6.27□□□□□ -1.41
CCDC88A-213ENST00000476903 ITPR2Q14571 2701 aa6.27□□□□□ -1.41
CCDC88A-213ENST00000476903 NOTCH2Q04721 2471 aa6.27□□□□□ -1.41
CCDC88A-213ENST00000476903 TEX15Q9BXT5 2789 aa6.26□□□□□ -1.41
CCDC88A-213ENST00000476903 A0A0G2JMM0 328 aa6.26□□□□□ -1.41
CCDC88A-213ENST00000476903 A0A1W2PPB8 328 aa6.26□□□□□ -1.41
CCDC88A-213ENST00000476903 A0A1W2PRS3 328 aa6.26□□□□□ -1.41
CCDC88A-213ENST00000476903 PINLYPA6NC86 204 aa6.26□□□□□ -1.41
CCDC88A-213ENST00000476903 FAM166BA8MTA8 275 aa6.26□□□□□ -1.41
CCDC88A-213ENST00000476903 KIR3DP1A8MWS1 328 aa6.26□□□□□ -1.41
CCDC88A-213ENST00000476903 G3V3Y1 287 aa6.26□□□□□ -1.41
CCDC88A-213ENST00000476903 PGRMC2O15173 223 aa6.26□□□□□ -1.41
CCDC88A-213ENST00000476903 GUCY1B2O75343 617 aa6.26□□□□□ -1.41
CCDC88A-213ENST00000476903 PDE9AO76083 593 aa6.26□□□□□ -1.41
CCDC88A-213ENST00000476903 SUPT7LO94864 414 aa6.26□□□□□ -1.41
CCDC88A-213ENST00000476903 KLK1P06870 262 aa6.26□□□□□ -1.41
CCDC88A-213ENST00000476903 TPOP07202 933 aa6.26□□□□□ -1.41
CCDC88A-213ENST00000476903 CD3EP07766 207 aa6.26□□□□□ -1.41
CCDC88A-213ENST00000476903 GSTA1P08263 222 aa6.26□□□□□ -1.41
CCDC88A-213ENST00000476903 SBK3P0C264 359 aa6.26□□□□□ -1.41
CCDC88A-213ENST00000476903 RHOXF2BP0C7M4 288 aa6.26□□□□□ -1.41
CCDC88A-213ENST00000476903 SLC35E2P0CK97 266 aa6.26□□□□□ -1.41
CCDC88A-213ENST00000476903 GCAP28676 217 aa6.26□□□□□ -1.41
CCDC88A-213ENST00000476903 SERPINB3P29508 390 aa6.26□□□□□ -1.41
CCDC88A-213ENST00000476903 PTGER4P35408 488 aa6.26□□□□□ -1.41
CCDC88A-213ENST00000476903 MAPK12P53778 367 aa6.26□□□□□ -1.41
CCDC88A-213ENST00000476903 CDH13P55290 713 aa6.26□□□□□ -1.41
CCDC88A-213ENST00000476903 SLC37A1P57057 533 aa6.26□□□□□ -1.41
CCDC88A-213ENST00000476903 ZNF267Q14586 743 aaPredicted RBP6.26□□□□□ -1.41
CCDC88A-213ENST00000476903 RASA2Q15283 850 aa6.26□□□□□ -1.41
CCDC88A-213ENST00000476903 ZNF630Q2M218 657 aaPredicted RBP6.26□□□□□ -1.41
CCDC88A-213ENST00000476903 ZNF750Q32MQ0 723 aa6.26□□□□□ -1.41
CCDC88A-213ENST00000476903 ZNF791Q3KP31 576 aaPredicted RBP6.26□□□□□ -1.41
CCDC88A-213ENST00000476903 SGO1Q5FBB7 561 aa6.26□□□□□ -1.41
CCDC88A-213ENST00000476903 ZNF678Q5SXM1 525 aa6.26□□□□□ -1.41
CCDC88A-213ENST00000476903 CCNYL2Q5T2Q4 361 aa6.26□□□□□ -1.41
CCDC88A-213ENST00000476903 C6orf163Q5TEZ5 329 aa6.26□□□□□ -1.41
CCDC88A-213ENST00000476903 C3P1Q6ZMU1 363 aa6.26□□□□□ -1.41
CCDC88A-213ENST00000476903 DGAT2L6Q6ZPD8 337 aa6.26□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms