RNA–Protein interactions for RNA: ENST00000468534.1

CCDC88A-210, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 536 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-210ENST00000468534 PRAMEF26H0Y7S4 382 aa4.44□□□□□ -1.7
CCDC88A-210ENST00000468534 NDUFA2O43678 99 aa4.44□□□□□ -1.7
CCDC88A-210ENST00000468534 PRAMEF11O60813 436 aa4.44□□□□□ -1.7
CCDC88A-210ENST00000468534 JRKO75564 520 aa4.44□□□□□ -1.7
CCDC88A-210ENST00000468534 OR2F2O95006 317 aa4.44□□□□□ -1.7
CCDC88A-210ENST00000468534 IFNA2P01563 188 aa4.44□□□□□ -1.7
CCDC88A-210ENST00000468534 GPIP06744 558 aa4.44□□□□□ -1.7
CCDC88A-210ENST00000468534 ERCC1P07992 297 aaPredicted RBP4.44□□□□□ -1.7
CCDC88A-210ENST00000468534 ANKRD34CP0C6C1 535 aa4.44□□□□□ -1.7
CCDC88A-210ENST00000468534 SLC35E2BP0CK96 405 aa4.44□□□□□ -1.7
CCDC88A-210ENST00000468534 SLC35E2P0CK97 266 aa4.44□□□□□ -1.7
CCDC88A-210ENST00000468534 COX5BP10606 129 aa4.44□□□□□ -1.7
CCDC88A-210ENST00000468534 SLC2A4P14672 509 aa4.44□□□□□ -1.7
CCDC88A-210ENST00000468534 ZNF182P17025 639 aaPredicted RBP4.44□□□□□ -1.7
CCDC88A-210ENST00000468534 UBA1P22314 1058 aaKnown RBP4.44□□□□□ -1.7
CCDC88A-210ENST00000468534 UQCRC2P22695 453 aa4.44□□□□□ -1.7
CCDC88A-210ENST00000468534 PRPH2P23942 346 aa4.44□□□□□ -1.7
CCDC88A-210ENST00000468534 G0S2P27469 103 aa4.44□□□□□ -1.7
CCDC88A-210ENST00000468534 MARCKSP29966 332 aaPredicted RBP4.44□□□□□ -1.7
CCDC88A-210ENST00000468534 PRDX2P32119 198 aa4.44□□□□□ -1.7
CCDC88A-210ENST00000468534 OTX1P32242 354 aaPredicted RBP4.44□□□□□ -1.7
CCDC88A-210ENST00000468534 NSFP46459 744 aaKnown RBP4.44□□□□□ -1.7
CCDC88A-210ENST00000468534 RFX2P48378 723 aa4.44□□□□□ -1.7
CCDC88A-210ENST00000468534 BLKP51451 505 aa4.44□□□□□ -1.7
CCDC88A-210ENST00000468534 RAP1GDS1P52306 607 aa4.44□□□□□ -1.7
CCDC88A-210ENST00000468534 NDST1P52848 882 aa4.44□□□□□ -1.7
CCDC88A-210ENST00000468534 ATP5J2P56134 94 aa4.44□□□□□ -1.7
CCDC88A-210ENST00000468534 SLC37A1P57057 533 aa4.44□□□□□ -1.7
CCDC88A-210ENST00000468534 NUP107P57740 925 aa4.44□□□□□ -1.7
CCDC88A-210ENST00000468534 AP3S2P59780 193 aa4.44□□□□□ -1.7
CCDC88A-210ENST00000468534 RPL10AP62906 217 aaKnown RBP4.44□□□□□ -1.7
CCDC88A-210ENST00000468534 MRPS25P82663 173 aaKnown RBP4.44□□□□□ -1.7
CCDC88A-210ENST00000468534 PEX6Q13608 980 aa4.44□□□□□ -1.7
CCDC88A-210ENST00000468534 ALKBH1Q13686 389 aaKnown RBP4.44□□□□□ -1.7
CCDC88A-210ENST00000468534 KEAP1Q14145 624 aa4.44□□□□□ -1.7
CCDC88A-210ENST00000468534 KRT81Q14533 505 aa4.44□□□□□ -1.7
CCDC88A-210ENST00000468534 ITPRIPL2Q3MIP1 535 aa4.44□□□□□ -1.7
CCDC88A-210ENST00000468534 GXYLT1Q4G148 440 aa4.44□□□□□ -1.7
CCDC88A-210ENST00000468534 YIF1BQ5BJH7 314 aa4.44□□□□□ -1.7
CCDC88A-210ENST00000468534 PRAMEF19Q5SWL8 479 aa4.44□□□□□ -1.7
CCDC88A-210ENST00000468534 CELF3Q5SZQ8 465 aaKnown RBP4.44□□□□□ -1.7
CCDC88A-210ENST00000468534 BSPRYQ5W0U4 402 aa4.44□□□□□ -1.7
CCDC88A-210ENST00000468534 NIPAL3Q6P499 406 aa4.44□□□□□ -1.7
CCDC88A-210ENST00000468534 RNASEKQ6P5S7 137 aaKnown RBP4.44□□□□□ -1.7
CCDC88A-210ENST00000468534 PRSS55Q6UWB4 352 aaPredicted RBP4.44□□□□□ -1.7
CCDC88A-210ENST00000468534 VITQ6UXI7 678 aa4.44□□□□□ -1.7
CCDC88A-210ENST00000468534 Q6ZTK2 550 aa4.44□□□□□ -1.7
CCDC88A-210ENST00000468534 MOB3CQ70IA8 216 aa4.44□□□□□ -1.7
CCDC88A-210ENST00000468534 CYB5R4Q7L1T6 521 aa4.44□□□□□ -1.7
CCDC88A-210ENST00000468534 ARCQ7LC44 396 aa4.44□□□□□ -1.7
CCDC88A-210ENST00000468534 SLC16A9Q7RTY1 509 aa4.44□□□□□ -1.7
CCDC88A-210ENST00000468534 GPAT4Q86UL3 456 aa4.44□□□□□ -1.7
CCDC88A-210ENST00000468534 CATSPERDQ86XM0 798 aa4.44□□□□□ -1.7
CCDC88A-210ENST00000468534 KMT5CQ86Y97 462 aa4.44□□□□□ -1.7
CCDC88A-210ENST00000468534 GPSM1Q86YR5 675 aa4.44□□□□□ -1.7
CCDC88A-210ENST00000468534 GID4Q8IVV7 300 aa4.44□□□□□ -1.7
CCDC88A-210ENST00000468534 LAX1Q8IWV1 398 aa4.44□□□□□ -1.7
CCDC88A-210ENST00000468534 ARHGAP18Q8N392 663 aa4.44□□□□□ -1.7
CCDC88A-210ENST00000468534 KIAA0895Q8NCT3 520 aa4.44□□□□□ -1.7
CCDC88A-210ENST00000468534 OR5D18Q8NGL1 313 aa4.44□□□□□ -1.7
CCDC88A-210ENST00000468534 M1APQ8TC57 530 aa4.44□□□□□ -1.7
CCDC88A-210ENST00000468534 MARCH1Q8TCQ1 289 aa4.44□□□□□ -1.7
CCDC88A-210ENST00000468534 PROX1Q92786 737 aa4.44□□□□□ -1.7
CCDC88A-210ENST00000468534 MCHR2Q969V1 340 aa4.44□□□□□ -1.7
CCDC88A-210ENST00000468534 CCDC124Q96CT7 223 aaKnown RBP4.44□□□□□ -1.7
CCDC88A-210ENST00000468534 TM4SF19Q96DZ7 209 aa4.44□□□□□ -1.7
CCDC88A-210ENST00000468534 GLT1D1Q96MS3 346 aa4.44□□□□□ -1.7
CCDC88A-210ENST00000468534 CASD1Q96PB1 797 aa4.44□□□□□ -1.7
CCDC88A-210ENST00000468534 MS4A10Q96PG2 267 aa4.44□□□□□ -1.7
CCDC88A-210ENST00000468534 NDNQ99608 321 aa4.44□□□□□ -1.7
CCDC88A-210ENST00000468534 OLFM1Q99784 485 aa4.44□□□□□ -1.7
CCDC88A-210ENST00000468534 CTRCQ99895 268 aa4.44□□□□□ -1.7
CCDC88A-210ENST00000468534 TMEM47Q9BQJ4 181 aa4.44□□□□□ -1.7
CCDC88A-210ENST00000468534 C7orf50Q9BRJ6 194 aaKnown RBP4.44□□□□□ -1.7
CCDC88A-210ENST00000468534 MED10Q9BTT4 135 aa4.44□□□□□ -1.7
CCDC88A-210ENST00000468534 PAPOLGQ9BWT3 736 aaKnown RBP4.44□□□□□ -1.7
CCDC88A-210ENST00000468534 C1QTNF5Q9BXJ0 243 aa4.44□□□□□ -1.7
CCDC88A-210ENST00000468534 PARD6BQ9BYG5 372 aa4.44□□□□□ -1.7
CCDC88A-210ENST00000468534 LRRN3Q9H3W5 708 aa4.44□□□□□ -1.7
CCDC88A-210ENST00000468534 SMYD3Q9H7B4 428 aa4.44□□□□□ -1.7
CCDC88A-210ENST00000468534 ADAP2Q9NPF8 381 aa4.44□□□□□ -1.7
CCDC88A-210ENST00000468534 C19orf12Q9NSK7 152 aa4.44□□□□□ -1.7
CCDC88A-210ENST00000468534 C20orf96Q9NUD7 363 aaPredicted RBP4.44□□□□□ -1.7
CCDC88A-210ENST00000468534 IMP3Q9NV31 184 aaKnown RBP4.44□□□□□ -1.7
CCDC88A-210ENST00000468534 RHBDL2Q9NX52 303 aa4.44□□□□□ -1.7
CCDC88A-210ENST00000468534 B9D1Q9UPM9 204 aa4.44□□□□□ -1.7
CCDC88A-210ENST00000468534 ERGIC3Q9Y282 383 aa4.44□□□□□ -1.7
CCDC88A-210ENST00000468534 DDX52Q9Y2R4 599 aaKnown RBP eCLIP4.44□□□□□ -1.7
CCDC88A-210ENST00000468534 A0A087X0K7 114 aa4.43□□□□□ -1.7
CCDC88A-210ENST00000468534 TMEM129A0AVI4 362 aa4.43□□□□□ -1.7
CCDC88A-210ENST00000468534 ILVBLA1L0T0 632 aa4.43□□□□□ -1.7
CCDC88A-210ENST00000468534 CLEC18AA5D8T8 446 aa4.43□□□□□ -1.7
CCDC88A-210ENST00000468534 FABP12A6NFH5 140 aa4.43□□□□□ -1.7
CCDC88A-210ENST00000468534 ERI2A8K979 691 aaKnown RBP4.43□□□□□ -1.7
CCDC88A-210ENST00000468534 SERPINE3A8MV23 424 aa4.43□□□□□ -1.7
CCDC88A-210ENST00000468534 ARHGEF33A8MVX0 844 aa4.43□□□□□ -1.7
CCDC88A-210ENST00000468534 NPIPB11E5RHQ5 1161 aa4.43□□□□□ -1.7
CCDC88A-210ENST00000468534 KLRC4-KLRK1H3BQV0 150 aa4.43□□□□□ -1.7
CCDC88A-210ENST00000468534 SDHDO14521 159 aa4.43□□□□□ -1.7
CCDC88A-210ENST00000468534 STX10O60499 249 aa4.43□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms