RNA–Protein interactions for RNA: ENST00000464168.5

USP4-208, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 4

Gene USP4, Length 601 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-208ENST00000464168 DEKP35659 375 aaKnown RBP20.55■□□□□ 0.88
USP4-208ENST00000464168 SERPINB8P50452 374 aa20.55■□□□□ 0.88
USP4-208ENST00000464168 GFRA1P56159 465 aa20.55■□□□□ 0.88
USP4-208ENST00000464168 PLCXD2Q0VAA5 305 aa20.55■□□□□ 0.88
USP4-208ENST00000464168 IFT88Q13099 833 aa20.55■□□□□ 0.88
USP4-208ENST00000464168 UAP1Q16222 522 aaPredicted RBP20.55■□□□□ 0.88
USP4-208ENST00000464168 TRMT12Q53H54 448 aaKnown RBP20.55■□□□□ 0.88
USP4-208ENST00000464168 ENPP6Q6UWR7 440 aa20.55■□□□□ 0.88
USP4-208ENST00000464168 Q71RC1 249 aaPredicted RBP20.55■□□□□ 0.88
USP4-208ENST00000464168 RDH11Q8TC12 318 aa20.55■□□□□ 0.88
USP4-208ENST00000464168 TM4SF18Q96CE8 201 aa20.55■□□□□ 0.88
USP4-208ENST00000464168 FARSBQ9NSD9 589 aaKnown RBP20.55■□□□□ 0.88
USP4-208ENST00000464168 FN1P02751 2386 aaKnown RBP20.54■□□□□ 0.88
USP4-208ENST00000464168 A0A1B0GTL3 188 aa20.54■□□□□ 0.88
USP4-208ENST00000464168 SH3D21A4FU49 640 aa20.54■□□□□ 0.88
USP4-208ENST00000464168 PRAMEF25A6NGN4 478 aa20.54■□□□□ 0.88
USP4-208ENST00000464168 PPICP45877 212 aa20.54■□□□□ 0.88
USP4-208ENST00000464168 STARP49675 285 aa20.54■□□□□ 0.88
USP4-208ENST00000464168 EMDP50402 254 aa20.54■□□□□ 0.88
USP4-208ENST00000464168 GALNT1Q10472 559 aaPredicted RBP20.54■□□□□ 0.88
USP4-208ENST00000464168 MILR1Q7Z6M3 343 aa20.54■□□□□ 0.88
USP4-208ENST00000464168 OR52R1Q8NGF1 315 aa20.54■□□□□ 0.88
USP4-208ENST00000464168 SMPDL3BQ92485 455 aa20.54■□□□□ 0.88
USP4-208ENST00000464168 BEX4Q9NWD9 120 aaPredicted RBP20.54■□□□□ 0.88
USP4-208ENST00000464168 CLCF1Q9UBD9 225 aa20.54■□□□□ 0.88
USP4-208ENST00000464168 SLC12A4Q9UP95 1085 aa20.54■□□□□ 0.88
USP4-208ENST00000464168 TLN2Q9Y4G6 2542 aa20.53■□□□□ 0.88
USP4-208ENST00000464168 STX16-NPEPL1H3BU86 382 aa20.53■□□□□ 0.88
USP4-208ENST00000464168 STX16O14662 325 aa20.53■□□□□ 0.88
USP4-208ENST00000464168 TO15178 435 aa20.53■□□□□ 0.88
USP4-208ENST00000464168 CPA2P48052 419 aa20.53■□□□□ 0.88
USP4-208ENST00000464168 LHX2P50458 406 aa20.53■□□□□ 0.88
USP4-208ENST00000464168 NKX6-1P78426 367 aaPredicted RBP20.53■□□□□ 0.88
USP4-208ENST00000464168 HMGCS1Q01581 520 aa20.53■□□□□ 0.88
USP4-208ENST00000464168 LTB4RQ15722 352 aa20.53■□□□□ 0.88
USP4-208ENST00000464168 GGTA1PQ4G0N0 100 aa20.53■□□□□ 0.88
USP4-208ENST00000464168 FAM180BQ6P0A1 224 aa20.53■□□□□ 0.88
USP4-208ENST00000464168 CXorf67Q86X51 503 aaPredicted RBP20.53■□□□□ 0.88
USP4-208ENST00000464168 GCNT2Q8N0V5 402 aa20.53■□□□□ 0.88
USP4-208ENST00000464168 OR4F6Q8NGB9 312 aa20.53■□□□□ 0.88
USP4-208ENST00000464168 KLHL29Q96CT2 875 aa20.53■□□□□ 0.88
USP4-208ENST00000464168 CNRIP1Q96F85 164 aaPredicted RBP20.53■□□□□ 0.88
USP4-208ENST00000464168 ZNF681Q96N22 645 aa20.53■□□□□ 0.88
USP4-208ENST00000464168 PIGMQ9H3S5 423 aa20.53■□□□□ 0.88
USP4-208ENST00000464168 ELOVL6Q9H5J4 265 aa20.53■□□□□ 0.88
USP4-208ENST00000464168 TAS2R10Q9NYW0 307 aa20.53■□□□□ 0.88
USP4-208ENST00000464168 PSME2Q9UL46 239 aa20.53■□□□□ 0.88
USP4-208ENST00000464168 A8MXE2 369 aa20.52■□□□□ 0.88
USP4-208ENST00000464168 PPP6CO00743 305 aa20.52■□□□□ 0.88
USP4-208ENST00000464168 RBP1P09455 135 aa20.52■□□□□ 0.88
USP4-208ENST00000464168 INHBBP09529 407 aa20.52■□□□□ 0.88
USP4-208ENST00000464168 PCSK2P16519 638 aa20.52■□□□□ 0.88
USP4-208ENST00000464168 UBAP2Q5T6F2 1119 aaKnown RBP20.52■□□□□ 0.88
USP4-208ENST00000464168 RPS27LQ71UM5 84 aaKnown RBP20.52■□□□□ 0.88
USP4-208ENST00000464168 IFNEQ86WN2 208 aa20.52■□□□□ 0.88
USP4-208ENST00000464168 PLCZ1Q86YW0 608 aa20.52■□□□□ 0.88
USP4-208ENST00000464168 TMBIM1Q969X1 311 aa20.52■□□□□ 0.88
USP4-208ENST00000464168 PRODH2Q9UF12 536 aa20.52■□□□□ 0.88
USP4-208ENST00000464168 FBXL2Q9UKC9 423 aa20.52■□□□□ 0.88
USP4-208ENST00000464168 TMCO1Q9UM00 188 aa20.52■□□□□ 0.88
USP4-208ENST00000464168 GPR55Q9Y2T6 319 aaPredicted RBP20.52■□□□□ 0.88
USP4-208ENST00000464168 ARID1AO14497 2285 aa20.52■□□□□ 0.88
USP4-208ENST00000464168 ZANQ9Y493 2812 aa20.52■□□□□ 0.88
USP4-208ENST00000464168 MED12LQ86YW9 2145 aa20.51■□□□□ 0.87
USP4-208ENST00000464168 TNFSF12-TNFSF13A0A0A6YY99 330 aa20.51■□□□□ 0.87
USP4-208ENST00000464168 FRG2CA6NGY1 282 aa20.51■□□□□ 0.87
USP4-208ENST00000464168 OR6C70A6NIJ9 312 aa20.51■□□□□ 0.87
USP4-208ENST00000464168 PLOD2O00469 737 aa20.51■□□□□ 0.87
USP4-208ENST00000464168 TNFSF13O75888 250 aa20.51■□□□□ 0.87
USP4-208ENST00000464168 PDYNP01213 254 aa20.51■□□□□ 0.87
USP4-208ENST00000464168 ADSLP30566 484 aaPredicted RBP20.51■□□□□ 0.87
USP4-208ENST00000464168 SRD5A2P31213 254 aa20.51■□□□□ 0.87
USP4-208ENST00000464168 MAGEA12P43365 314 aa20.51■□□□□ 0.87
USP4-208ENST00000464168 MRPS35P82673 323 aaKnown RBP20.51■□□□□ 0.87
USP4-208ENST00000464168 GAB1Q13480 694 aa20.51■□□□□ 0.87
USP4-208ENST00000464168 FAM219BQ5XKK7 198 aa20.51■□□□□ 0.87
USP4-208ENST00000464168 TMCO6Q96DC7 493 aa20.51■□□□□ 0.87
USP4-208ENST00000464168 COL21A1Q96P44 957 aa20.51■□□□□ 0.87
USP4-208ENST00000464168 LRRC1Q9BTT6 524 aa20.51■□□□□ 0.87
USP4-208ENST00000464168 ACBD3Q9H3P7 528 aa20.51■□□□□ 0.87
USP4-208ENST00000464168 ZDHHC18Q9NUE0 388 aa20.51■□□□□ 0.87
USP4-208ENST00000464168 XPR1Q9UBH6 696 aa20.51■□□□□ 0.87
USP4-208ENST00000464168 ESYT3A0FGR9 886 aa20.5■□□□□ 0.87
USP4-208ENST00000464168 CASKO14936 926 aa20.5■□□□□ 0.87
USP4-208ENST00000464168 REM1O75628 298 aa20.5■□□□□ 0.87
USP4-208ENST00000464168 CHMP24386 653 aa20.5■□□□□ 0.87
USP4-208ENST00000464168 CLDN18P56856 261 aa20.5■□□□□ 0.87
USP4-208ENST00000464168 EEF1A1P68104 462 aaKnown RBP20.5■□□□□ 0.87
USP4-208ENST00000464168 EEF1A1P5Q5VTE0 462 aa20.5■□□□□ 0.87
USP4-208ENST00000464168 SHEQ5VZ18 495 aa20.5■□□□□ 0.87
USP4-208ENST00000464168 LETMD1Q6P1Q0 360 aa20.5■□□□□ 0.87
USP4-208ENST00000464168 AAGABQ6PD74 315 aa20.5■□□□□ 0.87
USP4-208ENST00000464168 SLC35A4Q96G79 324 aa20.5■□□□□ 0.87
USP4-208ENST00000464168 ACSS3Q9H6R3 686 aa20.5■□□□□ 0.87
USP4-208ENST00000464168 ANKRA2Q9H9E1 313 aa20.5■□□□□ 0.87
USP4-208ENST00000464168 BRF2Q9HAW0 419 aa20.5■□□□□ 0.87
USP4-208ENST00000464168 NDRG3Q9UGV2 375 aa20.5■□□□□ 0.87
USP4-208ENST00000464168 PACSIN3Q9UKS6 424 aa20.5■□□□□ 0.87
USP4-208ENST00000464168 MRPS18CQ9Y3D5 142 aaKnown RBP20.5■□□□□ 0.87
USP4-208ENST00000464168 TESMINQ9Y4I5 508 aa20.5■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms