RNA–Protein interactions for RNA: ENST00000448833.5

VPS41-208, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 1 (best)

Gene VPS41, Length 711 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-208ENST00000448833 EHD3Q9NZN3 535 aa6.47□□□□□ -1.37
VPS41-208ENST00000448833 KLRF1Q9NZS2 232 aa6.47□□□□□ -1.37
VPS41-208ENST00000448833 STOML1Q9UBI4 398 aa6.47□□□□□ -1.37
VPS41-208ENST00000448833 DCDC2Q9UHG0 476 aa6.47□□□□□ -1.37
VPS41-208ENST00000448833 ZNF639Q9UID6 485 aa6.47□□□□□ -1.37
VPS41-208ENST00000448833 MCM8Q9UJA3 840 aa6.47□□□□□ -1.37
VPS41-208ENST00000448833 MRTO4Q9UKD2 239 aaKnown RBP6.47□□□□□ -1.37
VPS41-208ENST00000448833 CES1P1Q9UKY3 287 aa6.47□□□□□ -1.37
VPS41-208ENST00000448833 CAMK2AQ9UQM7 478 aa6.47□□□□□ -1.37
VPS41-208ENST00000448833 MED12LQ86YW9 2145 aa6.46□□□□□ -1.37
VPS41-208ENST00000448833 GNG14A0A1W2PPG7 69 aa6.46□□□□□ -1.38
VPS41-208ENST00000448833 MBD3L4A6NDZ8 208 aaPredicted RBP6.46□□□□□ -1.38
VPS41-208ENST00000448833 MBD3L3A6NE82 208 aaPredicted RBP6.46□□□□□ -1.38
VPS41-208ENST00000448833 FRG2CA6NGY1 282 aa6.46□□□□□ -1.38
VPS41-208ENST00000448833 TUBAL3A6NHL2 446 aa6.46□□□□□ -1.38
VPS41-208ENST00000448833 MBD3L5A6NJ08 208 aaPredicted RBP6.46□□□□□ -1.38
VPS41-208ENST00000448833 WASHC1A8K0Z3 465 aa6.46□□□□□ -1.38
VPS41-208ENST00000448833 A8MT66 165 aa6.46□□□□□ -1.38
VPS41-208ENST00000448833 TRIM49D1C9J1S8 452 aa6.46□□□□□ -1.38
VPS41-208ENST00000448833 LINC01387J3KSC0 135 aa6.46□□□□□ -1.38
VPS41-208ENST00000448833 ICOSLGO75144 302 aa6.46□□□□□ -1.38
VPS41-208ENST00000448833 RPS17P08708 135 aaKnown RBP6.46□□□□□ -1.38
VPS41-208ENST00000448833 ABHD2P08910 425 aa6.46□□□□□ -1.38
VPS41-208ENST00000448833 CT62P0C5K7 136 aa6.46□□□□□ -1.38
VPS41-208ENST00000448833 EPXP11678 715 aa6.46□□□□□ -1.38
VPS41-208ENST00000448833 BMP7P18075 431 aa6.46□□□□□ -1.38
VPS41-208ENST00000448833 S1PR1P21453 382 aa6.46□□□□□ -1.38
VPS41-208ENST00000448833 ATP5F1P24539 256 aaPredicted RBP6.46□□□□□ -1.38
VPS41-208ENST00000448833 PTPN6P29350 595 aa6.46□□□□□ -1.38
VPS41-208ENST00000448833 HMOX2P30519 316 aa6.46□□□□□ -1.38
VPS41-208ENST00000448833 FEN1P39748 380 aaKnown RBP6.46□□□□□ -1.38
VPS41-208ENST00000448833 ALDH9A1P49189 494 aa6.46□□□□□ -1.38
VPS41-208ENST00000448833 PNLIPRP2P54317 469 aa6.46□□□□□ -1.38
VPS41-208ENST00000448833 DIO3P55073 304 aa6.46□□□□□ -1.38
VPS41-208ENST00000448833 DLX5P56178 289 aa6.46□□□□□ -1.38
VPS41-208ENST00000448833 EEFSECP57772 596 aaKnown RBP6.46□□□□□ -1.38
VPS41-208ENST00000448833 PPP2R2AP63151 447 aa6.46□□□□□ -1.38
VPS41-208ENST00000448833 ACSM2AQ08AH3 577 aa6.46□□□□□ -1.38
VPS41-208ENST00000448833 BCL2A1Q16548 175 aa6.46□□□□□ -1.38
VPS41-208ENST00000448833 ACSM2BQ68CK6 577 aa6.46□□□□□ -1.38
VPS41-208ENST00000448833 OR2A2Q6IF42 318 aa6.46□□□□□ -1.38
VPS41-208ENST00000448833 ANGPTL8Q6UXH0 198 aa6.46□□□□□ -1.38
VPS41-208ENST00000448833 GPRIN3Q6ZVF9 776 aa6.46□□□□□ -1.38
VPS41-208ENST00000448833 IFNEQ86WN2 208 aa6.46□□□□□ -1.38
VPS41-208ENST00000448833 LIX1LQ8IVB5 337 aa6.46□□□□□ -1.38
VPS41-208ENST00000448833 IFT20Q8IY31 132 aa6.46□□□□□ -1.38
VPS41-208ENST00000448833 ZZZ3Q8IYH5 903 aa6.46□□□□□ -1.38
VPS41-208ENST00000448833 C1orf52Q8N6N3 182 aaKnown RBP6.46□□□□□ -1.38
VPS41-208ENST00000448833 FAM83FQ8NEG4 500 aaPredicted RBP6.46□□□□□ -1.38
VPS41-208ENST00000448833 OR14L1PQ8NHC6 308 aa6.46□□□□□ -1.38
VPS41-208ENST00000448833 MBD3L2Q8NHZ7 208 aaPredicted RBP6.46□□□□□ -1.38
VPS41-208ENST00000448833 METTL6Q8TCB7 284 aa6.46□□□□□ -1.38
VPS41-208ENST00000448833 ZNF675Q8TD23 568 aa6.46□□□□□ -1.38
VPS41-208ENST00000448833 DCAKDQ8WVC6 231 aa6.46□□□□□ -1.38
VPS41-208ENST00000448833 TM4SF18Q96CE8 201 aa6.46□□□□□ -1.38
VPS41-208ENST00000448833 OMA1Q96E52 524 aa6.46□□□□□ -1.38
VPS41-208ENST00000448833 WDYHV1Q96HA8 205 aa6.46□□□□□ -1.38
VPS41-208ENST00000448833 METTL2AQ96IZ6 378 aaKnown RBP6.46□□□□□ -1.38
VPS41-208ENST00000448833 COL21A1Q96P44 957 aa6.46□□□□□ -1.38
VPS41-208ENST00000448833 UCN2Q96RP3 112 aa6.46□□□□□ -1.38
VPS41-208ENST00000448833 TRIB1Q96RU8 372 aa6.46□□□□□ -1.38
VPS41-208ENST00000448833 ZNF382Q96SR6 550 aa6.46□□□□□ -1.38
VPS41-208ENST00000448833 SFXN3Q9BWM7 321 aa6.46□□□□□ -1.38
VPS41-208ENST00000448833 OSBPL11Q9BXB4 747 aa6.46□□□□□ -1.38
VPS41-208ENST00000448833 NXF5Q9H1B4 397 aaKnown RBP6.46□□□□□ -1.38
VPS41-208ENST00000448833 PIGMQ9H3S5 423 aa6.46□□□□□ -1.38
VPS41-208ENST00000448833 PFDN4Q9NQP4 134 aa6.46□□□□□ -1.38
VPS41-208ENST00000448833 RASSF1Q9NS23 344 aa6.46□□□□□ -1.38
VPS41-208ENST00000448833 MAT2BQ9NZL9 334 aa6.46□□□□□ -1.38
VPS41-208ENST00000448833 SENP1Q9P0U3 644 aa6.46□□□□□ -1.38
VPS41-208ENST00000448833 NDRG3Q9UGV2 375 aa6.46□□□□□ -1.38
VPS41-208ENST00000448833 ST6GALNAC2Q9UJ37 374 aa6.46□□□□□ -1.38
VPS41-208ENST00000448833 UTS2RQ9UKP6 389 aa6.46□□□□□ -1.38
VPS41-208ENST00000448833 GRID1Q9ULK0 1009 aa6.46□□□□□ -1.38
VPS41-208ENST00000448833 GPR55Q9Y2T6 319 aaPredicted RBP6.46□□□□□ -1.38
VPS41-208ENST00000448833 ITPR3Q14573 2671 aa6.46□□□□□ -1.38
VPS41-208ENST00000448833 SPG11Q96JI7 2443 aa6.46□□□□□ -1.38
VPS41-208ENST00000448833 SERTM1A2A2V5 107 aa6.45□□□□□ -1.38
VPS41-208ENST00000448833 PRAMEF25A6NGN4 478 aa6.45□□□□□ -1.38
VPS41-208ENST00000448833 TTC36A6NLP5 189 aa6.45□□□□□ -1.38
VPS41-208ENST00000448833 A6NNC1 897 aa6.45□□□□□ -1.38
VPS41-208ENST00000448833 H0Y3Z8 333 aa6.45□□□□□ -1.38
VPS41-208ENST00000448833 MANBAO00462 879 aa6.45□□□□□ -1.38
VPS41-208ENST00000448833 GNB5O14775 395 aa6.45□□□□□ -1.38
VPS41-208ENST00000448833 CASKO14936 926 aa6.45□□□□□ -1.38
VPS41-208ENST00000448833 PCDH7O60245 1069 aa6.45□□□□□ -1.38
VPS41-208ENST00000448833 PLOD3O60568 738 aa6.45□□□□□ -1.38
VPS41-208ENST00000448833 COQ9O75208 318 aa6.45□□□□□ -1.38
VPS41-208ENST00000448833 REM1O75628 298 aa6.45□□□□□ -1.38
VPS41-208ENST00000448833 OR4F21O95013 312 aa6.45□□□□□ -1.38
VPS41-208ENST00000448833 RCBTB2O95199 551 aa6.45□□□□□ -1.38
VPS41-208ENST00000448833 CRHP06850 196 aa6.45□□□□□ -1.38
VPS41-208ENST00000448833 TMIGD3P0DMS9 266 aaPredicted RBP6.45□□□□□ -1.38
VPS41-208ENST00000448833 CD99P14209 185 aa6.45□□□□□ -1.38
VPS41-208ENST00000448833 DDX5P17844 614 aaKnown RBP6.45□□□□□ -1.38
VPS41-208ENST00000448833 IL12BP29460 328 aa6.45□□□□□ -1.38
VPS41-208ENST00000448833 SRD5A2P31213 254 aa6.45□□□□□ -1.38
VPS41-208ENST00000448833 PCYT1AP49585 367 aa6.45□□□□□ -1.38
VPS41-208ENST00000448833 EMDP50402 254 aa6.45□□□□□ -1.38
VPS41-208ENST00000448833 DGKQP52824 942 aa6.45□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms