RNA–Protein interactions for RNA: ENST00000445503.5

MSH6-204, Transcript of mutS homolog 6, humanhuman

TSL 1 (best)

Gene MSH6, Length 4,158 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-204ENST00000445503 PPP3R1P63098 170 aa11.2□□□□□ -0.62
MSH6-204ENST00000445503 SDE2Q6IQ49 451 aa11.2□□□□□ -0.62
MSH6-204ENST00000445503 IKBIPQ70UQ0 350 aa11.2□□□□□ -0.62
MSH6-204ENST00000445503 ZNF433Q8N7K0 673 aaPredicted RBP11.2□□□□□ -0.62
MSH6-204ENST00000445503 C12orf76Q8N812 135 aaPredicted RBP11.2□□□□□ -0.62
MSH6-204ENST00000445503 GPR32P1Q8NGA4 272 aa11.2□□□□□ -0.62
MSH6-204ENST00000445503 SETD7Q8WTS6 366 aaKnown RBP11.2□□□□□ -0.62
MSH6-204ENST00000445503 BARHL1Q9BZE3 327 aa11.2□□□□□ -0.62
MSH6-204ENST00000445503 H3BQ06 376 aaPredicted RBP11.2□□□□□ -0.62
MSH6-204ENST00000445503 FFAR1O14842 300 aa11.2□□□□□ -0.62
MSH6-204ENST00000445503 LYRM1O43325 122 aa11.2□□□□□ -0.62
MSH6-204ENST00000445503 SOX18P35713 384 aa11.2□□□□□ -0.62
MSH6-204ENST00000445503 GCGRP47871 477 aa11.2□□□□□ -0.62
MSH6-204ENST00000445503 KCNJ5P48544 419 aa11.2□□□□□ -0.62
MSH6-204ENST00000445503 C1QTNF12Q5T7M4 302 aa11.2□□□□□ -0.62
MSH6-204ENST00000445503 OR4C11Q6IEV9 310 aa11.2□□□□□ -0.62
MSH6-204ENST00000445503 PLBD1Q6P4A8 553 aa11.2□□□□□ -0.62
MSH6-204ENST00000445503 FAM83HQ6ZRV2 1179 aaPredicted RBP11.2□□□□□ -0.62
MSH6-204ENST00000445503 CPOQ8IVL8 374 aa11.2□□□□□ -0.62
MSH6-204ENST00000445503 OR8H3Q8N146 312 aa11.2□□□□□ -0.62
MSH6-204ENST00000445503 OR6F1Q8NGZ6 308 aa11.2□□□□□ -0.62
MSH6-204ENST00000445503 GRHL3Q8TE85 626 aa11.2□□□□□ -0.62
MSH6-204ENST00000445503 SPRYD4Q8WW59 207 aaPredicted RBP11.2□□□□□ -0.62
MSH6-204ENST00000445503 DEDD2Q8WXF8 326 aa11.2□□□□□ -0.62
MSH6-204ENST00000445503 SNAPC3Q92966 411 aa11.2□□□□□ -0.62
MSH6-204ENST00000445503 TRMT61AQ96FX7 289 aaKnown RBP11.2□□□□□ -0.62
MSH6-204ENST00000445503 SLAMF7Q9NQ25 335 aa11.2□□□□□ -0.62
MSH6-204ENST00000445503 MCUBQ9NWR8 336 aa11.2□□□□□ -0.62
MSH6-204ENST00000445503 TBC1D24Q9ULP9 559 aa11.2□□□□□ -0.62
MSH6-204ENST00000445503 ZNF860A6NHJ4 632 aa11.2□□□□□ -0.62
MSH6-204ENST00000445503 OR52A4PA6NMU1 304 aa11.2□□□□□ -0.62
MSH6-204ENST00000445503 TMPRSS11DO60235 418 aa11.2□□□□□ -0.62
MSH6-204ENST00000445503 BMPR1AP36894 532 aa11.2□□□□□ -0.62
MSH6-204ENST00000445503 MMP12P39900 470 aa11.2□□□□□ -0.62
MSH6-204ENST00000445503 TM4SF4P48230 202 aa11.2□□□□□ -0.62
MSH6-204ENST00000445503 MAB21L1Q13394 359 aa11.2□□□□□ -0.62
MSH6-204ENST00000445503 LHX8Q68G74 356 aa11.2□□□□□ -0.62
MSH6-204ENST00000445503 AMIGO1Q86WK6 493 aa11.2□□□□□ -0.62
MSH6-204ENST00000445503 NUP43Q8NFH3 380 aa11.2□□□□□ -0.62
MSH6-204ENST00000445503 OR51A7Q8NH64 312 aa11.2□□□□□ -0.62
MSH6-204ENST00000445503 SUN5Q8TC36 379 aa11.2□□□□□ -0.62
MSH6-204ENST00000445503 GNPDA2Q8TDQ7 276 aa11.2□□□□□ -0.62
MSH6-204ENST00000445503 RELTQ969Z4 430 aa11.2□□□□□ -0.62
MSH6-204ENST00000445503 NEURL3Q96EH8 262 aa11.2□□□□□ -0.62
MSH6-204ENST00000445503 RAD9AQ99638 391 aa11.2□□□□□ -0.62
MSH6-204ENST00000445503 ABCG5Q9H222 651 aa11.2□□□□□ -0.62
MSH6-204ENST00000445503 DDX31Q9H8H2 851 aaKnown RBP11.2□□□□□ -0.62
MSH6-204ENST00000445503 NDRG2Q9UN36 371 aaKnown RBP11.2□□□□□ -0.62
MSH6-204ENST00000445503 NTNG1Q9Y2I2 539 aa11.2□□□□□ -0.62
MSH6-204ENST00000445503 EXOSC1Q9Y3B2 195 aaKnown RBP11.2□□□□□ -0.62
MSH6-204ENST00000445503 LRRC72A6NJI9 287 aa11.2□□□□□ -0.62
MSH6-204ENST00000445503 PCP4L1A6NKN8 68 aa11.2□□□□□ -0.62
MSH6-204ENST00000445503 C12orf71A8MTZ7 269 aa11.2□□□□□ -0.62
MSH6-204ENST00000445503 HMGN4O00479 90 aa11.2□□□□□ -0.62
MSH6-204ENST00000445503 PRODHO43272 600 aa11.2□□□□□ -0.62
MSH6-204ENST00000445503 AHRP35869 848 aa11.2□□□□□ -0.62
MSH6-204ENST00000445503 MC3RP41968 323 aa11.2□□□□□ -0.62
MSH6-204ENST00000445503 ARPC4P59998 168 aa11.2□□□□□ -0.62
MSH6-204ENST00000445503 RAB14P61106 215 aa11.2□□□□□ -0.62
MSH6-204ENST00000445503 BNC1Q01954 994 aa11.2□□□□□ -0.62
MSH6-204ENST00000445503 ADAM15Q13444 863 aa11.2□□□□□ -0.62
MSH6-204ENST00000445503 GPNMBQ14956 572 aa11.2□□□□□ -0.62
MSH6-204ENST00000445503 SLC7A6Q92536 515 aa11.2□□□□□ -0.62
MSH6-204ENST00000445503 SAMD8Q96LT4 415 aa11.2□□□□□ -0.62
MSH6-204ENST00000445503 CHIAQ9BZP6 476 aa11.2□□□□□ -0.62
MSH6-204ENST00000445503 BTBD1Q9H0C5 482 aa11.2□□□□□ -0.62
MSH6-204ENST00000445503 PRKAG2Q9UGJ0 569 aa11.2□□□□□ -0.62
MSH6-204ENST00000445503 HEPACAM2A8MVW5 462 aa11.19□□□□□ -0.62
MSH6-204ENST00000445503 RFXAPO00287 272 aa11.19□□□□□ -0.62
MSH6-204ENST00000445503 NTN1O95631 604 aa11.19□□□□□ -0.62
MSH6-204ENST00000445503 IL1AP01583 271 aa11.19□□□□□ -0.62
MSH6-204ENST00000445503 TAS2R38P59533 333 aa11.19□□□□□ -0.62
MSH6-204ENST00000445503 CHRNEQ04844 493 aa11.19□□□□□ -0.62
MSH6-204ENST00000445503 DSG2Q14126 1118 aa11.19□□□□□ -0.62
MSH6-204ENST00000445503 INSL4Q14641 139 aa11.19□□□□□ -0.62
MSH6-204ENST00000445503 CDK10Q15131 360 aa11.19□□□□□ -0.62
MSH6-204ENST00000445503 TMEM215Q68D42 235 aa11.19□□□□□ -0.62
MSH6-204ENST00000445503 BICRALQ6AI39 1079 aa11.19□□□□□ -0.62
MSH6-204ENST00000445503 DNAJC5GQ8N7S2 189 aa11.19□□□□□ -0.62
MSH6-204ENST00000445503 KCT2Q8NC54 265 aa11.19□□□□□ -0.62
MSH6-204ENST00000445503 TM9SF4Q92544 642 aa11.19□□□□□ -0.62
MSH6-204ENST00000445503 CAMK1GQ96NX5 476 aa11.19□□□□□ -0.62
MSH6-204ENST00000445503 CLEC4MQ9H2X3 399 aaPredicted RBP11.19□□□□□ -0.62
MSH6-204ENST00000445503 MED20Q9H944 212 aa11.19□□□□□ -0.62
MSH6-204ENST00000445503 FAM86C2PA6NEL3 165 aa11.19□□□□□ -0.62
MSH6-204ENST00000445503 HIDE1A8MVS5 230 aa11.19□□□□□ -0.62
MSH6-204ENST00000445503 H3BSH0 61 aa11.19□□□□□ -0.62
MSH6-204ENST00000445503 HOXC11O43248 304 aaPredicted RBP11.19□□□□□ -0.62
MSH6-204ENST00000445503 SEMG1P04279 462 aa11.19□□□□□ -0.62
MSH6-204ENST00000445503 CSF3P09919 207 aa11.19□□□□□ -0.62
MSH6-204ENST00000445503 ACADMP11310 421 aa11.19□□□□□ -0.62
MSH6-204ENST00000445503 ADRB3P13945 408 aa11.19□□□□□ -0.62
MSH6-204ENST00000445503 NT5EP21589 574 aa11.19□□□□□ -0.62
MSH6-204ENST00000445503 SLC6A11P48066 632 aa11.19□□□□□ -0.62
MSH6-204ENST00000445503 MVDP53602 400 aa11.19□□□□□ -0.62
MSH6-204ENST00000445503 BCL2L15Q5TBC7 163 aa11.19□□□□□ -0.62
MSH6-204ENST00000445503 MLIPQ5VWP3 458 aa11.19□□□□□ -0.62
MSH6-204ENST00000445503 PPP2R2DQ66LE6 453 aa11.19□□□□□ -0.62
MSH6-204ENST00000445503 PIAS4Q8N2W9 510 aaPredicted RBP11.19□□□□□ -0.62
MSH6-204ENST00000445503 OR4E2Q8NGC2 313 aa11.19□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 59.9 ms