RNA–Protein interactions for RNA: ENST00000443711.2

USP40-206, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-206ENST00000443711 SIRT6Q8N6T7 355 aa14.62□□□□□ -0.07
USP40-206ENST00000443711 ZNF441Q8N8Z8 693 aa14.62□□□□□ -0.07
USP40-206ENST00000443711 C17orf47Q8NEP4 570 aa14.62□□□□□ -0.07
USP40-206ENST00000443711 MIPOL1Q8TD10 442 aa14.62□□□□□ -0.07
USP40-206ENST00000443711 ADAMTS15Q8TE58 950 aa14.62□□□□□ -0.07
USP40-206ENST00000443711 SLC9A6Q92581 669 aa14.62□□□□□ -0.07
USP40-206ENST00000443711 HOXB13Q92826 284 aaPredicted RBP14.62□□□□□ -0.07
USP40-206ENST00000443711 AURKBQ96GD4 344 aaPredicted RBP14.62□□□□□ -0.07
USP40-206ENST00000443711 LCORQ96JN0 433 aaPredicted RBP14.62□□□□□ -0.07
USP40-206ENST00000443711 ZNF354BQ96LW1 612 aa14.62□□□□□ -0.07
USP40-206ENST00000443711 SH3GL1Q99961 368 aa14.62□□□□□ -0.07
USP40-206ENST00000443711 YIPF4Q9BSR8 244 aa14.62□□□□□ -0.07
USP40-206ENST00000443711 LMF2Q9BU23 707 aaKnown RBP14.62□□□□□ -0.07
USP40-206ENST00000443711 CDCP1Q9H5V8 836 aa14.62□□□□□ -0.07
USP40-206ENST00000443711 RYDENQ9NUL5 291 aaKnown RBP14.62□□□□□ -0.07
USP40-206ENST00000443711 GIN1Q9NXP7 522 aa14.62□□□□□ -0.07
USP40-206ENST00000443711 MYOTQ9UBF9 498 aa14.62□□□□□ -0.07
USP40-206ENST00000443711 TEKT2Q9UIF3 430 aa14.62□□□□□ -0.07
USP40-206ENST00000443711 CORO2BQ9UQ03 480 aa14.62□□□□□ -0.07
USP40-206ENST00000443711 GPR55Q9Y2T6 319 aaPredicted RBP14.62□□□□□ -0.07
USP40-206ENST00000443711 GMEB1Q9Y692 573 aa14.62□□□□□ -0.07
USP40-206ENST00000443711 TMEM200CA6NKL6 621 aa14.61□□□□□ -0.07
USP40-206ENST00000443711 DUXAA6NLW8 204 aa14.61□□□□□ -0.07
USP40-206ENST00000443711 DNAJB5O75953 348 aa14.61□□□□□ -0.07
USP40-206ENST00000443711 UNC5CO95185 931 aa14.61□□□□□ -0.07
USP40-206ENST00000443711 T-ENOLP0DO92 83 aa14.61□□□□□ -0.07
USP40-206ENST00000443711 ACP2P11117 423 aa14.61□□□□□ -0.07
USP40-206ENST00000443711 MAP3K8P41279 467 aa14.61□□□□□ -0.07
USP40-206ENST00000443711 KHKP50053 298 aa14.61□□□□□ -0.07
USP40-206ENST00000443711 NR0B1P51843 470 aaKnown RBP14.61□□□□□ -0.07
USP40-206ENST00000443711 MLF1P58340 268 aa14.61□□□□□ -0.07
USP40-206ENST00000443711 PSPHP78330 225 aa14.61□□□□□ -0.07
USP40-206ENST00000443711 MXRA7P84157 204 aa14.61□□□□□ -0.07
USP40-206ENST00000443711 CAPRIN1Q14444 709 aaKnown RBP14.61□□□□□ -0.07
USP40-206ENST00000443711 MEP1AQ16819 746 aa14.61□□□□□ -0.07
USP40-206ENST00000443711 CRB2Q5IJ48 1285 aa14.61□□□□□ -0.07
USP40-206ENST00000443711 EXOSC6Q5RKV6 272 aaKnown RBP14.61□□□□□ -0.07
USP40-206ENST00000443711 SLC44A2Q8IWA5 706 aaPredicted RBP14.61□□□□□ -0.07
USP40-206ENST00000443711 OR52N2Q8NGI0 321 aa14.61□□□□□ -0.07
USP40-206ENST00000443711 PNPT1Q8TCS8 783 aaKnown RBP14.61□□□□□ -0.07
USP40-206ENST00000443711 JADE3Q92613 823 aa14.61□□□□□ -0.07
USP40-206ENST00000443711 HSPBAP1Q96EW2 488 aa14.61□□□□□ -0.07
USP40-206ENST00000443711 BTBD9Q96Q07 612 aa14.61□□□□□ -0.07
USP40-206ENST00000443711 HOPXQ9BPY8 73 aaPredicted RBP14.61□□□□□ -0.07
USP40-206ENST00000443711 CPPED1Q9BRF8 314 aaPredicted RBP14.61□□□□□ -0.07
USP40-206ENST00000443711 THUMPD3Q9BV44 507 aaKnown RBP14.61□□□□□ -0.07
USP40-206ENST00000443711 NXF5Q9H1B4 397 aaKnown RBP14.61□□□□□ -0.07
USP40-206ENST00000443711 OR51I1Q9H343 314 aa14.61□□□□□ -0.07
USP40-206ENST00000443711 PIGUQ9H490 435 aa14.61□□□□□ -0.07
USP40-206ENST00000443711 LIN28AQ9H9Z2 209 aaKnown RBP14.61□□□□□ -0.07
USP40-206ENST00000443711 YARS2Q9Y2Z4 477 aaKnown RBP14.61□□□□□ -0.07
USP40-206ENST00000443711 PCDHGB3Q9Y5G1 929 aa14.61□□□□□ -0.07
USP40-206ENST00000443711 DMXL2Q8TDJ6 3036 aa14.6□□□□□ -0.07
USP40-206ENST00000443711 C15orf38-AP3S2A0A0A6YYH1 394 aa14.6□□□□□ -0.07
USP40-206ENST00000443711 FRG2CA6NGY1 282 aa14.6□□□□□ -0.07
USP40-206ENST00000443711 B2RBV5 119 aa14.6□□□□□ -0.07
USP40-206ENST00000443711 FXYD1O00168 92 aa14.6□□□□□ -0.07
USP40-206ENST00000443711 WWP2O00308 870 aa14.6□□□□□ -0.07
USP40-206ENST00000443711 EBAG9O00559 213 aa14.6□□□□□ -0.07
USP40-206ENST00000443711 ACOX3O15254 700 aa14.6□□□□□ -0.07
USP40-206ENST00000443711 NKX2-2O95096 273 aa14.6□□□□□ -0.07
USP40-206ENST00000443711 AGR2O95994 175 aa14.6□□□□□ -0.07
USP40-206ENST00000443711 C1QCP02747 245 aa14.6□□□□□ -0.07
USP40-206ENST00000443711 ITGB2P05107 769 aa14.6□□□□□ -0.07
USP40-206ENST00000443711 CT45A8P0DMV1 189 aa14.6□□□□□ -0.07
USP40-206ENST00000443711 CT45A9P0DMV2 189 aa14.6□□□□□ -0.07
USP40-206ENST00000443711 GABRA3P34903 492 aa14.6□□□□□ -0.07
USP40-206ENST00000443711 CRATP43155 626 aa14.6□□□□□ -0.07
USP40-206ENST00000443711 MAN2A2P49641 1150 aa14.6□□□□□ -0.07
USP40-206ENST00000443711 CASP9P55211 416 aa14.6□□□□□ -0.07
USP40-206ENST00000443711 NRG3P56975 720 aa14.6□□□□□ -0.07
USP40-206ENST00000443711 CORO7P57737 925 aa14.6□□□□□ -0.07
USP40-206ENST00000443711 RPS26P62854 115 aaKnown RBP14.6□□□□□ -0.07
USP40-206ENST00000443711 PSG6Q00889 435 aa14.6□□□□□ -0.07
USP40-206ENST00000443711 RGNQ15493 299 aa14.6□□□□□ -0.07
USP40-206ENST00000443711 TBR1Q16650 682 aa14.6□□□□□ -0.07
USP40-206ENST00000443711 CT45A2Q5DJT8 189 aa14.6□□□□□ -0.07
USP40-206ENST00000443711 PIGGQ5H8A4 983 aa14.6□□□□□ -0.07
USP40-206ENST00000443711 ACER2Q5QJU3 275 aa14.6□□□□□ -0.07
USP40-206ENST00000443711 ABHD17BQ5VST6 288 aa14.6□□□□□ -0.07
USP40-206ENST00000443711 AGAP7PQ5VUJ5 663 aa14.6□□□□□ -0.07
USP40-206ENST00000443711 FCRLBQ6BAA4 426 aa14.6□□□□□ -0.07
USP40-206ENST00000443711 NANOGP8Q6NSW7 305 aa14.6□□□□□ -0.07
USP40-206ENST00000443711 WDR53Q7Z5U6 358 aaPredicted RBP14.6□□□□□ -0.07
USP40-206ENST00000443711 ARPINQ7Z6K5 226 aa14.6□□□□□ -0.07
USP40-206ENST00000443711 TAGAPQ8N103 731 aa14.6□□□□□ -0.07
USP40-206ENST00000443711 SLC15A4Q8N697 577 aa14.6□□□□□ -0.07
USP40-206ENST00000443711 SLC16A11Q8NCK7 471 aa14.6□□□□□ -0.07
USP40-206ENST00000443711 OR8J3Q8NGG0 315 aa14.6□□□□□ -0.07
USP40-206ENST00000443711 SLC22A8Q8TCC7 542 aa14.6□□□□□ -0.07
USP40-206ENST00000443711 GPR151Q8TDV0 419 aa14.6□□□□□ -0.07
USP40-206ENST00000443711 SLC35A4Q96G79 324 aa14.6□□□□□ -0.07
USP40-206ENST00000443711 CNTNAP3BQ96NU0 1288 aa14.6□□□□□ -0.07
USP40-206ENST00000443711 AGAP4Q96P64 663 aa14.6□□□□□ -0.07
USP40-206ENST00000443711 OR7D2Q96RA2 312 aa14.6□□□□□ -0.07
USP40-206ENST00000443711 STACQ99469 402 aa14.6□□□□□ -0.07
USP40-206ENST00000443711 CNTNAP3Q9BZ76 1288 aa14.6□□□□□ -0.07
USP40-206ENST00000443711 SERHL2Q9H4I8 314 aa14.6□□□□□ -0.07
USP40-206ENST00000443711 NANOGQ9H9S0 305 aa14.6□□□□□ -0.07
USP40-206ENST00000443711 Q9N2J8 555 aa14.6□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms