RNA–Protein interactions for RNA: ENST00000437048.6

VPS53-204, Transcript of VPS53, GARP complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS53, Length 13,106 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-204ENST00000437048 FUT2Q10981 343 aa6.87□□□□□ -1.31
VPS53-204ENST00000437048 ZNF674Q2M3X9 581 aa6.87□□□□□ -1.31
VPS53-204ENST00000437048 CLEC6AQ6EIG7 209 aa6.87□□□□□ -1.31
VPS53-204ENST00000437048 SERPINA9Q86WD7 417 aa6.87□□□□□ -1.31
VPS53-204ENST00000437048 IQCF1Q8N6M8 205 aa6.87□□□□□ -1.31
VPS53-204ENST00000437048 OR8S1Q8NH09 359 aa6.87□□□□□ -1.31
VPS53-204ENST00000437048 TRAF4Q9BUZ4 470 aaPredicted RBP6.87□□□□□ -1.31
VPS53-204ENST00000437048 DOCK10Q96BY6 2186 aa6.86□□□□□ -1.31
VPS53-204ENST00000437048 UNC13CQ8NB66 2214 aa6.86□□□□□ -1.31
VPS53-204ENST00000437048 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP6.86□□□□□ -1.31
VPS53-204ENST00000437048 BDNFP23560 247 aa6.86□□□□□ -1.31
VPS53-204ENST00000437048 DHPSP49366 369 aaPredicted RBP6.86□□□□□ -1.31
VPS53-204ENST00000437048 ACTR1AP61163 376 aa6.86□□□□□ -1.31
VPS53-204ENST00000437048 ARHGAP19Q14CB8 494 aa6.86□□□□□ -1.31
VPS53-204ENST00000437048 SERINC5Q86VE9 423 aa6.86□□□□□ -1.31
VPS53-204ENST00000437048 SNX29P2Q8IUI4 249 aa6.86□□□□□ -1.31
VPS53-204ENST00000437048 CPXM2Q8N436 756 aa6.86□□□□□ -1.31
VPS53-204ENST00000437048 ZNF454Q8N9F8 522 aa6.86□□□□□ -1.31
VPS53-204ENST00000437048 OR1J2Q8NGS2 313 aa6.86□□□□□ -1.31
VPS53-204ENST00000437048 C1orf226A1L170 272 aa6.86□□□□□ -1.31
VPS53-204ENST00000437048 SYT7O43581 403 aa6.86□□□□□ -1.31
VPS53-204ENST00000437048 OR4F21O95013 312 aa6.86□□□□□ -1.31
VPS53-204ENST00000437048 FABP1P07148 127 aa6.86□□□□□ -1.31
VPS53-204ENST00000437048 GP1BBP13224 206 aa6.86□□□□□ -1.31
VPS53-204ENST00000437048 PSMB1P20618 241 aaKnown RBP6.86□□□□□ -1.31
VPS53-204ENST00000437048 MFGE8Q08431 387 aaPredicted RBP6.86□□□□□ -1.31
VPS53-204ENST00000437048 PDE12Q6L8Q7 609 aaKnown RBP6.86□□□□□ -1.31
VPS53-204ENST00000437048 CERKQ8TCT0 537 aa6.86□□□□□ -1.31
VPS53-204ENST00000437048 OR1E3Q8WZA6 343 aa6.86□□□□□ -1.31
VPS53-204ENST00000437048 BRINP2Q9C0B6 783 aa6.86□□□□□ -1.31
VPS53-204ENST00000437048 IFT22Q9H7X7 185 aa6.86□□□□□ -1.31
VPS53-204ENST00000437048 ADAP2Q9NPF8 381 aa6.86□□□□□ -1.31
VPS53-204ENST00000437048 C1orf167Q5SNV9 1468 aa6.86□□□□□ -1.31
VPS53-204ENST00000437048 GOT2P00505 430 aaKnown RBP6.86□□□□□ -1.31
VPS53-204ENST00000437048 ETV4P43268 484 aa6.86□□□□□ -1.31
VPS53-204ENST00000437048 SEZ6Q53EL9 994 aa6.86□□□□□ -1.31
VPS53-204ENST00000437048 PHTF2Q8N3S3 785 aa6.86□□□□□ -1.31
VPS53-204ENST00000437048 ZNF561Q8N587 486 aa6.86□□□□□ -1.31
VPS53-204ENST00000437048 PEX10O60683 326 aa6.86□□□□□ -1.31
VPS53-204ENST00000437048 RNF144AP50876 292 aaPredicted RBP6.86□□□□□ -1.31
VPS53-204ENST00000437048 MALLQ13021 153 aa6.86□□□□□ -1.31
VPS53-204ENST00000437048 FAM111BQ6SJ93 734 aa6.86□□□□□ -1.31
VPS53-204ENST00000437048 EXOSC8Q96B26 276 aaKnown RBP6.86□□□□□ -1.31
VPS53-204ENST00000437048 OR2T1O43869 369 aa6.86□□□□□ -1.31
VPS53-204ENST00000437048 DHRS4L1P0CG22 281 aa6.86□□□□□ -1.31
VPS53-204ENST00000437048 CRABP1P29762 137 aa6.86□□□□□ -1.31
VPS53-204ENST00000437048 S100A11P31949 105 aa6.86□□□□□ -1.31
VPS53-204ENST00000437048 RPS19P39019 145 aaKnown RBP6.86□□□□□ -1.31
VPS53-204ENST00000437048 SLAMF1Q13291 335 aa6.86□□□□□ -1.31
VPS53-204ENST00000437048 FUNDC1Q8IVP5 155 aa6.86□□□□□ -1.31
VPS53-204ENST00000437048 MTERF1Q99551 399 aaKnown RBP6.86□□□□□ -1.31
VPS53-204ENST00000437048 NLE1Q9NVX2 485 aaPredicted RBP6.86□□□□□ -1.31
VPS53-204ENST00000437048 FANCGO15287 622 aa6.86□□□□□ -1.31
VPS53-204ENST00000437048 SMIM6P0DI80 62 aa6.86□□□□□ -1.31
VPS53-204ENST00000437048 SDHBP21912 280 aa6.86□□□□□ -1.31
VPS53-204ENST00000437048 AKT2P31751 481 aa6.86□□□□□ -1.31
VPS53-204ENST00000437048 GP2P55259 537 aaKnown RBP6.86□□□□□ -1.31
VPS53-204ENST00000437048 HTRA4P83105 476 aaPredicted RBP6.86□□□□□ -1.31
VPS53-204ENST00000437048 SYT6Q5T7P8 510 aaPredicted RBP6.86□□□□□ -1.31
VPS53-204ENST00000437048 TMIGD1Q6UXZ0 262 aa6.86□□□□□ -1.31
VPS53-204ENST00000437048 OR13F1Q8NGS4 319 aa6.86□□□□□ -1.31
VPS53-204ENST00000437048 TP63Q9H3D4 680 aaPredicted RBP6.86□□□□□ -1.31
VPS53-204ENST00000437048 EIF2B4Q9UI10 523 aaKnown RBP6.86□□□□□ -1.31
VPS53-204ENST00000437048 IQCMA0A1B0GVH7 501 aa6.86□□□□□ -1.31
VPS53-204ENST00000437048 SNRPGP15A8MWD9 76 aa6.86□□□□□ -1.31
VPS53-204ENST00000437048 LCKP06239 509 aa6.86□□□□□ -1.31
VPS53-204ENST00000437048 SNTB1Q13884 538 aaKnown RBP6.86□□□□□ -1.31
VPS53-204ENST00000437048 LYSMD3Q7Z3D4 306 aa6.86□□□□□ -1.31
VPS53-204ENST00000437048 ACOT11Q8WXI4 607 aaPredicted RBP6.86□□□□□ -1.31
VPS53-204ENST00000437048 LRCH3Q96II8 777 aa6.86□□□□□ -1.31
VPS53-204ENST00000437048 SMOXQ9NWM0 555 aa6.86□□□□□ -1.31
VPS53-204ENST00000437048 CAMK2AQ9UQM7 478 aa6.86□□□□□ -1.31
VPS53-204ENST00000437048 UBE2J1Q9Y385 318 aaPredicted RBP6.86□□□□□ -1.31
VPS53-204ENST00000437048 C1GALT1C1LP0DN25 315 aa6.86□□□□□ -1.31
VPS53-204ENST00000437048 ZNF41P51814 821 aaPredicted RBP6.86□□□□□ -1.31
VPS53-204ENST00000437048 C1orf94Q6P1W5 598 aa6.86□□□□□ -1.31
VPS53-204ENST00000437048 LRRTM4Q86VH4 590 aa6.86□□□□□ -1.31
VPS53-204ENST00000437048 SLC15A4Q8N697 577 aa6.86□□□□□ -1.31
VPS53-204ENST00000437048 THAP7Q9BT49 309 aaPredicted RBP6.86□□□□□ -1.31
VPS53-204ENST00000437048 KIF13BQ9NQT8 1826 aa6.86□□□□□ -1.31
VPS53-204ENST00000437048 NUP205Q92621 2012 aa6.86□□□□□ -1.31
VPS53-204ENST00000437048 TBC1D3BA6NDS4 549 aa6.86□□□□□ -1.31
VPS53-204ENST00000437048 TP73O15350 636 aa6.86□□□□□ -1.31
VPS53-204ENST00000437048 EMC8O43402 210 aa6.86□□□□□ -1.31
VPS53-204ENST00000437048 GATCO43716 136 aaKnown RBP6.86□□□□□ -1.31
VPS53-204ENST00000437048 BCAS1O75363 584 aaPredicted RBP6.86□□□□□ -1.31
VPS53-204ENST00000437048 TACR2P21452 398 aa6.86□□□□□ -1.31
VPS53-204ENST00000437048 SLC9B2Q86UD5 537 aa6.86□□□□□ -1.31
VPS53-204ENST00000437048 AUTS2Q8WXX7 1259 aa6.86□□□□□ -1.31
VPS53-204ENST00000437048 PHYHIPLQ96FC7 376 aa6.86□□□□□ -1.31
VPS53-204ENST00000437048 PCDHAC1Q9H158 963 aa6.86□□□□□ -1.31
VPS53-204ENST00000437048 MRPS17Q9Y2R5 130 aaKnown RBP6.86□□□□□ -1.31
VPS53-204ENST00000437048 E5RGE8 158 aa6.86□□□□□ -1.31
VPS53-204ENST00000437048 LGALS2P05162 132 aa6.86□□□□□ -1.31
VPS53-204ENST00000437048 NT5EP21589 574 aa6.86□□□□□ -1.31
VPS53-204ENST00000437048 TIA1P31483 386 aaKnown RBP eCLIP6.86□□□□□ -1.31
VPS53-204ENST00000437048 MC3RP41968 323 aa6.86□□□□□ -1.31
VPS53-204ENST00000437048 SMAD3P84022 425 aaKnown RBP6.86□□□□□ -1.31
VPS53-204ENST00000437048 PCBP2Q15366 365 aaKnown RBP eCLIP6.86□□□□□ -1.315e-9■■■■■ 51.4
VPS53-204ENST00000437048 PYROXD2Q8N2H3 581 aa6.86□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms