RNA–Protein interactions for RNA: ENST00000431357.1

USP4-205, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 2,141 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-205ENST00000431357 SLC35G4P0C7Q5 338 aa10.64□□□□□ -0.71
USP4-205ENST00000431357 GPR89BP0CG08 455 aa10.64□□□□□ -0.71
USP4-205ENST00000431357 CTRB1P17538 263 aa10.64□□□□□ -0.71
USP4-205ENST00000431357 TCEA1P23193 301 aaKnown RBP10.64□□□□□ -0.71
USP4-205ENST00000431357 PTBP1P26599 531 aaKnown RBP eCLIP10.64□□□□□ -0.71
USP4-205ENST00000431357 GABRA5P31644 462 aa10.64□□□□□ -0.71
USP4-205ENST00000431357 SDC2P34741 201 aa10.64□□□□□ -0.71
USP4-205ENST00000431357 RCVRNP35243 200 aa10.64□□□□□ -0.71
USP4-205ENST00000431357 BUD31P41223 144 aaPredicted RBP10.64□□□□□ -0.71
USP4-205ENST00000431357 MNX1P50219 401 aaPredicted RBP10.64□□□□□ -0.71
USP4-205ENST00000431357 PPP3R1P63098 170 aa10.64□□□□□ -0.71
USP4-205ENST00000431357 HTRA4P83105 476 aaPredicted RBP10.64□□□□□ -0.71
USP4-205ENST00000431357 TSPAN31Q12999 210 aa10.64□□□□□ -0.71
USP4-205ENST00000431357 SLC9A5Q14940 896 aa10.64□□□□□ -0.71
USP4-205ENST00000431357 CDONQ4KMG0 1287 aa10.64□□□□□ -0.71
USP4-205ENST00000431357 NXNL2Q5VZ03 156 aa10.64□□□□□ -0.71
USP4-205ENST00000431357 CTRB2Q6GPI1 263 aa10.64□□□□□ -0.71
USP4-205ENST00000431357 KIAA1161Q6NSJ0 714 aa10.64□□□□□ -0.71
USP4-205ENST00000431357 METAP1DQ6UB28 335 aaPredicted RBP10.64□□□□□ -0.71
USP4-205ENST00000431357 RASSF6Q6ZTQ3 369 aa10.64□□□□□ -0.71
USP4-205ENST00000431357 VWA5B2Q8N398 1253 aa10.64□□□□□ -0.71
USP4-205ENST00000431357 PLA2G15Q8NCC3 412 aa10.64□□□□□ -0.71
USP4-205ENST00000431357 C1GALT1C1Q96EU7 318 aa10.64□□□□□ -0.71
USP4-205ENST00000431357 ST6GAL2Q96JF0 529 aa10.64□□□□□ -0.71
USP4-205ENST00000431357 TEX12Q9BXU0 123 aa10.64□□□□□ -0.71
USP4-205ENST00000431357 SAP130Q9H0E3 1048 aa10.64□□□□□ -0.71
USP4-205ENST00000431357 KCNK12Q9HB15 430 aa10.64□□□□□ -0.71
USP4-205ENST00000431357 CALML5Q9NZT1 146 aa10.64□□□□□ -0.71
USP4-205ENST00000431357 SF3B6Q9Y3B4 125 aaKnown RBP10.64□□□□□ -0.71
USP4-205ENST00000431357 PCYT1BQ9Y5K3 369 aaPredicted RBP10.64□□□□□ -0.71
USP4-205ENST00000431357 LRIT2A6NDA9 550 aa10.63□□□□□ -0.71
USP4-205ENST00000431357 CDK2AP1O14519 115 aa10.63□□□□□ -0.71
USP4-205ENST00000431357 POLR1CO15160 346 aaPredicted RBP10.63□□□□□ -0.71
USP4-205ENST00000431357 HCN1O60741 890 aa10.63□□□□□ -0.71
USP4-205ENST00000431357 UBXN7O94888 489 aa10.63□□□□□ -0.71
USP4-205ENST00000431357 ALX3O95076 343 aa10.63□□□□□ -0.71
USP4-205ENST00000431357 EPPINO95925 133 aa10.63□□□□□ -0.71
USP4-205ENST00000431357 CHRM4P08173 479 aa10.63□□□□□ -0.71
USP4-205ENST00000431357 CSF3P09919 207 aa10.63□□□□□ -0.71
USP4-205ENST00000431357 CEBPBP17676 345 aa10.63□□□□□ -0.71
USP4-205ENST00000431357 AZGP1P25311 298 aaKnown RBP10.63□□□□□ -0.71
USP4-205ENST00000431357 PSMB5P28074 263 aa10.63□□□□□ -0.71
USP4-205ENST00000431357 MTNR1AP48039 350 aa10.63□□□□□ -0.71
USP4-205ENST00000431357 CDK3Q00526 305 aa10.63□□□□□ -0.71
USP4-205ENST00000431357 PRDX1Q06830 199 aaKnown RBP10.63□□□□□ -0.71
USP4-205ENST00000431357 HYAL2Q12891 473 aa10.63□□□□□ -0.71
USP4-205ENST00000431357 TRAM2Q15035 370 aa10.63□□□□□ -0.71
USP4-205ENST00000431357 CRTC2Q53ET0 693 aaPredicted RBP10.63□□□□□ -0.71
USP4-205ENST00000431357 TCEAL5Q5H9L2 206 aa10.63□□□□□ -0.71
USP4-205ENST00000431357 SLC35F1Q5T1Q4 408 aa10.63□□□□□ -0.71
USP4-205ENST00000431357 CD200R1LQ6Q8B3 271 aa10.63□□□□□ -0.71
USP4-205ENST00000431357 ZNF730Q6ZMV8 503 aa10.63□□□□□ -0.71
USP4-205ENST00000431357 GRASPQ7Z6J2 395 aaPredicted RBP10.63□□□□□ -0.71
USP4-205ENST00000431357 COMTD1Q86VU5 262 aa10.63□□□□□ -0.71
USP4-205ENST00000431357 TTC9Q92623 222 aa10.63□□□□□ -0.71
USP4-205ENST00000431357 RFKQ969G6 155 aa10.63□□□□□ -0.71
USP4-205ENST00000431357 TP53INP1Q96A56 240 aa10.63□□□□□ -0.71
USP4-205ENST00000431357 GPA33Q99795 319 aa10.63□□□□□ -0.71
USP4-205ENST00000431357 ARHGDIGQ99819 225 aa10.63□□□□□ -0.71
USP4-205ENST00000431357 RAB11FIP5Q9BXF6 653 aa10.63□□□□□ -0.71
USP4-205ENST00000431357 TRIM45Q9H8W5 580 aaPredicted RBP10.63□□□□□ -0.71
USP4-205ENST00000431357 MARCH7Q9H992 704 aa10.63□□□□□ -0.71
USP4-205ENST00000431357 DEC1Q9P2X7 70 aa10.63□□□□□ -0.71
USP4-205ENST00000431357 PRKAG2Q9UGJ0 569 aa10.63□□□□□ -0.71
USP4-205ENST00000431357 SLC13A4Q9UKG4 626 aa10.63□□□□□ -0.71
USP4-205ENST00000431357 TRDV1A0A1B0GX56 115 aa10.63□□□□□ -0.71
USP4-205ENST00000431357 LCMT2O60294 686 aaKnown RBP10.63□□□□□ -0.71
USP4-205ENST00000431357 NFATC1O95644 943 aa10.63□□□□□ -0.71
USP4-205ENST00000431357 ALPPP05187 535 aa10.63□□□□□ -0.71
USP4-205ENST00000431357 SERPIND1P05546 499 aa10.63□□□□□ -0.71
USP4-205ENST00000431357 FHP07954 510 aa10.63□□□□□ -0.71
USP4-205ENST00000431357 IL32P24001 234 aa10.63□□□□□ -0.71
USP4-205ENST00000431357 MAN2A2P49641 1150 aa10.63□□□□□ -0.71
USP4-205ENST00000431357 TAS2R41P59536 307 aa10.63□□□□□ -0.71
USP4-205ENST00000431357 RPS25P62851 125 aaKnown RBP10.63□□□□□ -0.71
USP4-205ENST00000431357 MRPS15P82914 257 aaKnown RBP10.63□□□□□ -0.71
USP4-205ENST00000431357 C19orf57Q0VDD7 668 aa10.63□□□□□ -0.71
USP4-205ENST00000431357 ST3GAL3Q11203 375 aa10.63□□□□□ -0.71
USP4-205ENST00000431357 ZIC1Q15915 447 aa10.63□□□□□ -0.71
USP4-205ENST00000431357 GPAT3Q53EU6 434 aa10.63□□□□□ -0.71
USP4-205ENST00000431357 ZNF628Q5EBL2 1059 aa10.63□□□□□ -0.71
USP4-205ENST00000431357 ADCK2Q7Z695 626 aa10.63□□□□□ -0.71
USP4-205ENST00000431357 KIF18BQ86Y91 864 aa10.63□□□□□ -0.71
USP4-205ENST00000431357 AMER3Q8N944 861 aa10.63□□□□□ -0.71
USP4-205ENST00000431357 Q8N9G6 341 aaPredicted RBP10.63□□□□□ -0.71
USP4-205ENST00000431357 TP53I13Q8NBR0 393 aaPredicted RBP10.63□□□□□ -0.71
USP4-205ENST00000431357 SIMC1Q8NDZ2 872 aa10.63□□□□□ -0.71
USP4-205ENST00000431357 LILRB1Q8NHL6 650 aaPredicted RBP10.63□□□□□ -0.71
USP4-205ENST00000431357 FERD3LQ96RJ6 166 aa10.63□□□□□ -0.71
USP4-205ENST00000431357 ARHGAP9Q9BRR9 750 aa10.63□□□□□ -0.71
USP4-205ENST00000431357 KATNB1Q9BVA0 655 aa10.63□□□□□ -0.71
USP4-205ENST00000431357 MED17Q9NVC6 651 aa10.63□□□□□ -0.71
USP4-205ENST00000431357 ENTPD4Q9Y227 616 aa10.63□□□□□ -0.71
USP4-205ENST00000431357 LIPT1Q9Y234 373 aa10.63□□□□□ -0.71
USP4-205ENST00000431357 MRPS23Q9Y3D9 190 aaKnown RBP10.63□□□□□ -0.71
USP4-205ENST00000431357 A0A087WUU8 490 aa10.62□□□□□ -0.71
USP4-205ENST00000431357 FAM170BA6NMN3 283 aa10.62□□□□□ -0.71
USP4-205ENST00000431357 B8ZZF3 427 aa10.62□□□□□ -0.71
USP4-205ENST00000431357 EMC8O43402 210 aa10.62□□□□□ -0.71
USP4-205ENST00000431357 CHST10O43529 356 aa10.62□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms