RNA–Protein interactions for RNA: ENST00000430118.1

HMGB3-203, Transcript of high mobility group box 3, humanhuman

TSL 1 (best)

Gene HMGB3, Length 529 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-203ENST00000430118 ATG10Q9H0Y0 220 aa3.7□□□□□ -1.82
HMGB3-203ENST00000430118 CUEDC2Q9H467 287 aa3.7□□□□□ -1.82
HMGB3-203ENST00000430118 GAREM1Q9H706 876 aa3.7□□□□□ -1.82
HMGB3-203ENST00000430118 C12orf10Q9HB07 376 aa3.7□□□□□ -1.82
HMGB3-203ENST00000430118 ZBTB20Q9HC78 741 aaPredicted RBP3.7□□□□□ -1.82
HMGB3-203ENST00000430118 SAMSN1Q9NSI8 373 aaKnown RBP3.7□□□□□ -1.82
HMGB3-203ENST00000430118 MARCH5Q9NX47 278 aa3.7□□□□□ -1.82
HMGB3-203ENST00000430118 MAN1B1Q9UKM7 699 aa3.7□□□□□ -1.82
HMGB3-203ENST00000430118 HPCAL4Q9UM19 191 aa3.7□□□□□ -1.82
HMGB3-203ENST00000430118 STUB1Q9UNE7 303 aa3.7□□□□□ -1.82
HMGB3-203ENST00000430118 TRAF3IP3Q9Y228 551 aa3.7□□□□□ -1.82
HMGB3-203ENST00000430118 KCNK6Q9Y257 313 aa3.7□□□□□ -1.82
HMGB3-203ENST00000430118 PLEKHA6Q9Y2H5 1048 aa3.7□□□□□ -1.82
HMGB3-203ENST00000430118 FAM32AQ9Y421 112 aaKnown RBP3.7□□□□□ -1.82
HMGB3-203ENST00000430118 ITPR1Q14643 2758 aa3.7□□□□□ -1.82
HMGB3-203ENST00000430118 RALGAPA1Q6GYQ0 2036 aa3.7□□□□□ -1.82
HMGB3-203ENST00000430118 UBE4BO95155 1302 aa3.7□□□□□ -1.82
HMGB3-203ENST00000430118 BPTFQ12830 3046 aa3.69□□□□□ -1.82
HMGB3-203ENST00000430118 LINC00854A0A1B0GVQ3 168 aa3.69□□□□□ -1.82
HMGB3-203ENST00000430118 MAGEB16A2A368 324 aa3.69□□□□□ -1.82
HMGB3-203ENST00000430118 MYBPHLA2RUH7 354 aa3.69□□□□□ -1.82
HMGB3-203ENST00000430118 ANKRD61A6NGH8 418 aa3.69□□□□□ -1.82
HMGB3-203ENST00000430118 ARL5CA6NH57 179 aa3.69□□□□□ -1.82
HMGB3-203ENST00000430118 E9PAM4 449 aa3.69□□□□□ -1.82
HMGB3-203ENST00000430118 GOLGA8TH3BQL2 631 aa3.69□□□□□ -1.82
HMGB3-203ENST00000430118 M0QX08 132 aa3.69□□□□□ -1.82
HMGB3-203ENST00000430118 KMOO15229 486 aa3.69□□□□□ -1.82
HMGB3-203ENST00000430118 AKAP8O43823 692 aaKnown RBP3.69□□□□□ -1.82
HMGB3-203ENST00000430118 ZNF254O75437 659 aa3.69□□□□□ -1.82
HMGB3-203ENST00000430118 CLN5O75503 358 aa3.69□□□□□ -1.82
HMGB3-203ENST00000430118 ANP32DO95626 131 aa3.69□□□□□ -1.82
HMGB3-203ENST00000430118 FGF19O95750 216 aa3.69□□□□□ -1.82
HMGB3-203ENST00000430118 GUCA1CO95843 209 aa3.69□□□□□ -1.82
HMGB3-203ENST00000430118 FAM107AO95990 144 aa3.69□□□□□ -1.82
HMGB3-203ENST00000430118 HEXBP07686 556 aa3.69□□□□□ -1.82
HMGB3-203ENST00000430118 SERPINF2P08697 491 aa3.69□□□□□ -1.82
HMGB3-203ENST00000430118 CALM1P0DP23 149 aa3.69□□□□□ -1.82
HMGB3-203ENST00000430118 CALM2P0DP24 149 aa3.69□□□□□ -1.82
HMGB3-203ENST00000430118 CALM3P0DP25 149 aa3.69□□□□□ -1.82
HMGB3-203ENST00000430118 CDH1P12830 882 aa3.69□□□□□ -1.82
HMGB3-203ENST00000430118 ETS1P14921 441 aa3.69□□□□□ -1.82
HMGB3-203ENST00000430118 CEBPBP17676 345 aa3.69□□□□□ -1.82
HMGB3-203ENST00000430118 EFNA1P20827 205 aaPredicted RBP3.69□□□□□ -1.82
HMGB3-203ENST00000430118 CDH3P22223 829 aa3.69□□□□□ -1.82
HMGB3-203ENST00000430118 JAK1P23458 1154 aa3.69□□□□□ -1.82
HMGB3-203ENST00000430118 SFTPDP35247 375 aa3.69□□□□□ -1.82
HMGB3-203ENST00000430118 RABIFP47224 123 aa3.69□□□□□ -1.82
HMGB3-203ENST00000430118 SSTP61278 116 aa3.69□□□□□ -1.82
HMGB3-203ENST00000430118 HERV-K104P61576 105 aa3.69□□□□□ -1.82
HMGB3-203ENST00000430118 GNGT1P63211 74 aa3.69□□□□□ -1.82
HMGB3-203ENST00000430118 ELF3P78545 371 aaPredicted RBP3.69□□□□□ -1.82
HMGB3-203ENST00000430118 NTHL1P78549 312 aa3.69□□□□□ -1.82
HMGB3-203ENST00000430118 MBTD1Q05BQ5 628 aa3.69□□□□□ -1.82
HMGB3-203ENST00000430118 PPP1R8Q12972 351 aaKnown RBP3.69□□□□□ -1.82
HMGB3-203ENST00000430118 PON2Q15165 354 aa3.69□□□□□ -1.82
HMGB3-203ENST00000430118 ETFDHQ16134 617 aa3.69□□□□□ -1.82
HMGB3-203ENST00000430118 ZNF260Q3ZCT1 412 aa3.69□□□□□ -1.82
HMGB3-203ENST00000430118 ACCSLQ4AC99 568 aa3.69□□□□□ -1.82
HMGB3-203ENST00000430118 TAF1BQ53T94 588 aaPredicted RBP3.69□□□□□ -1.82
HMGB3-203ENST00000430118 PM20D1Q6GTS8 502 aa3.69□□□□□ -1.82
HMGB3-203ENST00000430118 TTC27Q6P3X3 843 aa3.69□□□□□ -1.82
HMGB3-203ENST00000430118 CORO6Q6QEF8 472 aa3.69□□□□□ -1.82
HMGB3-203ENST00000430118 VITQ6UXI7 678 aa3.69□□□□□ -1.82
HMGB3-203ENST00000430118 KDM7AQ6ZMT4 941 aa3.69□□□□□ -1.82
HMGB3-203ENST00000430118 Q6ZS52 159 aa3.69□□□□□ -1.82
HMGB3-203ENST00000430118 C1orf186Q6ZWK4 172 aa3.69□□□□□ -1.82
HMGB3-203ENST00000430118 LPCAT2Q7L5N7 544 aa3.69□□□□□ -1.82
HMGB3-203ENST00000430118 ASPGQ86U10 573 aa3.69□□□□□ -1.82
HMGB3-203ENST00000430118 MFSD6LQ8IWD5 586 aa3.69□□□□□ -1.82
HMGB3-203ENST00000430118 FBXL14Q8N1E6 418 aa3.69□□□□□ -1.82
HMGB3-203ENST00000430118 IQCF1Q8N6M8 205 aa3.69□□□□□ -1.82
HMGB3-203ENST00000430118 TSTD1Q8NFU3 115 aa3.69□□□□□ -1.82
HMGB3-203ENST00000430118 OR1J1Q8NGS3 322 aa3.69□□□□□ -1.82
HMGB3-203ENST00000430118 GRHL3Q8TE85 626 aa3.69□□□□□ -1.82
HMGB3-203ENST00000430118 ZNF473Q8WTR7 871 aaKnown RBP3.69□□□□□ -1.82
HMGB3-203ENST00000430118 ANKRD49Q8WVL7 239 aa3.69□□□□□ -1.82
HMGB3-203ENST00000430118 ZNF75CPQ92670 426 aaPredicted RBP3.69□□□□□ -1.82
HMGB3-203ENST00000430118 GGHQ92820 318 aa3.69□□□□□ -1.82
HMGB3-203ENST00000430118 EFHD2Q96C19 240 aaPredicted RBP3.69□□□□□ -1.82
HMGB3-203ENST00000430118 SLC47A1Q96FL8 570 aa3.69□□□□□ -1.82
HMGB3-203ENST00000430118 DTD2Q96FN9 168 aa3.69□□□□□ -1.82
HMGB3-203ENST00000430118 MED30Q96HR3 178 aa3.69□□□□□ -1.82
HMGB3-203ENST00000430118 CCDC42Q96M95 316 aa3.69□□□□□ -1.82
HMGB3-203ENST00000430118 PRMT1Q99873 361 aaKnown RBP3.69□□□□□ -1.82
HMGB3-203ENST00000430118 ZNF577Q9BSK1 485 aa3.69□□□□□ -1.82
HMGB3-203ENST00000430118 ACPTQ9BZG2 426 aa3.69□□□□□ -1.82
HMGB3-203ENST00000430118 LAT2Q9GZY6 243 aa3.69□□□□□ -1.82
HMGB3-203ENST00000430118 DRC3Q9H069 523 aa3.69□□□□□ -1.82
HMGB3-203ENST00000430118 DDX47Q9H0S4 455 aaKnown RBP3.69□□□□□ -1.82
HMGB3-203ENST00000430118 CARD9Q9H257 536 aa3.69□□□□□ -1.82
HMGB3-203ENST00000430118 INIPQ9NRY2 104 aa3.69□□□□□ -1.82
HMGB3-203ENST00000430118 SLC38A7Q9NVC3 462 aa3.69□□□□□ -1.82
HMGB3-203ENST00000430118 ATAD3AQ9NVI7 634 aa3.69□□□□□ -1.82
HMGB3-203ENST00000430118 SPASTQ9UBP0 616 aa3.69□□□□□ -1.82
HMGB3-203ENST00000430118 IL36AQ9UHA7 158 aa3.69□□□□□ -1.82
HMGB3-203ENST00000430118 SLC12A6Q9UHW9 1150 aa3.69□□□□□ -1.82
HMGB3-203ENST00000430118 SH3BGRL2Q9UJC5 107 aa3.69□□□□□ -1.82
HMGB3-203ENST00000430118 DNPEPQ9ULA0 475 aa3.69□□□□□ -1.82
HMGB3-203ENST00000430118 AURKCQ9UQB9 309 aa3.69□□□□□ -1.82
HMGB3-203ENST00000430118 CLCA3PQ9Y6N3 262 aa3.69□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms