RNA–Protein interactions for RNA: ENST00000423463.6

VPS13A-208, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,702 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-208ENST00000423463 TCRBV9S1A1TA0A576 114 aa2.35□□□□□ -2.03
VPS13A-208ENST00000423463 FAM90A10PA6NDY2 464 aa2.35□□□□□ -2.03
VPS13A-208ENST00000423463 SLC9B1P1A6NJY1 282 aa2.35□□□□□ -2.03
VPS13A-208ENST00000423463 EFCAB7A8K855 629 aa2.35□□□□□ -2.03
VPS13A-208ENST00000423463 TAF4O00268 1085 aa2.35□□□□□ -2.03
VPS13A-208ENST00000423463 RASGRF2O14827 1237 aa2.35□□□□□ -2.03
VPS13A-208ENST00000423463 RRP8O43159 456 aaKnown RBP2.35□□□□□ -2.03
VPS13A-208ENST00000423463 C8GP07360 202 aa2.35□□□□□ -2.03
VPS13A-208ENST00000423463 FGF5P12034 268 aa2.35□□□□□ -2.03
VPS13A-208ENST00000423463 CDH3P22223 829 aa2.35□□□□□ -2.03
VPS13A-208ENST00000423463 MCM3P25205 808 aa2.35□□□□□ -2.03
VPS13A-208ENST00000423463 OAS2P29728 719 aaKnown RBP2.35□□□□□ -2.03
VPS13A-208ENST00000423463 PKLRP30613 574 aa2.35□□□□□ -2.03
VPS13A-208ENST00000423463 ARRB2P32121 409 aa2.35□□□□□ -2.03
VPS13A-208ENST00000423463 STX2P32856 288 aa2.35□□□□□ -2.03
VPS13A-208ENST00000423463 PHBP35232 272 aa2.35□□□□□ -2.03
VPS13A-208ENST00000423463 SPRP35270 261 aaPredicted RBP2.35□□□□□ -2.03
VPS13A-208ENST00000423463 GP5P40197 560 aa2.35□□□□□ -2.03
VPS13A-208ENST00000423463 ARL1P40616 181 aaPredicted RBP2.35□□□□□ -2.03
VPS13A-208ENST00000423463 EIF2S3P41091 472 aaKnown RBP2.35□□□□□ -2.03
VPS13A-208ENST00000423463 ETV5P41161 510 aa2.35□□□□□ -2.03
VPS13A-208ENST00000423463 KPNA2P52292 529 aaKnown RBP2.35□□□□□ -2.03
VPS13A-208ENST00000423463 PMS2P54278 862 aa2.35□□□□□ -2.03
VPS13A-208ENST00000423463 GPX6P59796 221 aa2.35□□□□□ -2.03
VPS13A-208ENST00000423463 GRB7Q14451 532 aa2.35□□□□□ -2.03
VPS13A-208ENST00000423463 SLMAPQ14BN4 828 aa2.35□□□□□ -2.03
VPS13A-208ENST00000423463 NAA25Q14CX7 972 aa2.35□□□□□ -2.03
VPS13A-208ENST00000423463 FASTKD3Q14CZ7 662 aaKnown RBP2.35□□□□□ -2.03
VPS13A-208ENST00000423463 SLC5A12Q1EHB4 618 aa2.35□□□□□ -2.03
VPS13A-208ENST00000423463 KLHL38Q2WGJ6 581 aa2.35□□□□□ -2.03
VPS13A-208ENST00000423463 WASHC2DQ5SRD0 308 aa2.35□□□□□ -2.03
VPS13A-208ENST00000423463 DCAF12Q5T6F0 453 aa2.35□□□□□ -2.03
VPS13A-208ENST00000423463 GRTP1Q5TC63 336 aa2.35□□□□□ -2.03
VPS13A-208ENST00000423463 C9orf47Q6ZRZ4 202 aa2.35□□□□□ -2.03
VPS13A-208ENST00000423463 SLC16A12Q6ZSM3 486 aa2.35□□□□□ -2.03
VPS13A-208ENST00000423463 FAM92BQ6ZTR7 304 aa2.35□□□□□ -2.03
VPS13A-208ENST00000423463 CNPY4Q8N129 248 aa2.35□□□□□ -2.03
VPS13A-208ENST00000423463 BMPERQ8N8U9 685 aa2.35□□□□□ -2.03
VPS13A-208ENST00000423463 GPATCH11Q8N954 259 aa2.35□□□□□ -2.03
VPS13A-208ENST00000423463 ZNF248Q8NDW4 579 aa2.35□□□□□ -2.03
VPS13A-208ENST00000423463 TNIP2Q8NFZ5 429 aa2.35□□□□□ -2.03
VPS13A-208ENST00000423463 OR9A1PQ8NGU1 263 aa2.35□□□□□ -2.03
VPS13A-208ENST00000423463 NFKBIDQ8NI38 313 aa2.35□□□□□ -2.03
VPS13A-208ENST00000423463 CD200R1Q8TD46 325 aa2.35□□□□□ -2.03
VPS13A-208ENST00000423463 ADAMTS15Q8TE58 950 aa2.35□□□□□ -2.03
VPS13A-208ENST00000423463 SKA2Q8WVK7 121 aaPredicted RBP2.35□□□□□ -2.03
VPS13A-208ENST00000423463 FAR1Q8WVX9 515 aa2.35□□□□□ -2.03
VPS13A-208ENST00000423463 IFT81Q8WYA0 676 aa2.35□□□□□ -2.03
VPS13A-208ENST00000423463 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP2.35□□□□□ -2.03
VPS13A-208ENST00000423463 SMPDL3AQ92484 453 aa2.35□□□□□ -2.03
VPS13A-208ENST00000423463 OR2A14Q96R47 310 aa2.35□□□□□ -2.03
VPS13A-208ENST00000423463 CYTH2Q99418 400 aa2.35□□□□□ -2.03
VPS13A-208ENST00000423463 MAP3K3Q99759 626 aa2.35□□□□□ -2.03
VPS13A-208ENST00000423463 CPNE1Q99829 537 aa2.35□□□□□ -2.03
VPS13A-208ENST00000423463 FUT8Q9BYC5 575 aa2.35□□□□□ -2.03
VPS13A-208ENST00000423463 PITPNM3Q9BZ71 974 aa2.35□□□□□ -2.03
VPS13A-208ENST00000423463 SPRY4Q9C004 299 aa2.35□□□□□ -2.03
VPS13A-208ENST00000423463 RHOJQ9H4E5 214 aa2.35□□□□□ -2.03
VPS13A-208ENST00000423463 XKR8Q9H6D3 395 aa2.35□□□□□ -2.03
VPS13A-208ENST00000423463 POPDC3Q9HBV1 291 aa2.35□□□□□ -2.03
VPS13A-208ENST00000423463 PDE7BQ9NP56 450 aa2.35□□□□□ -2.03
VPS13A-208ENST00000423463 SMYD2Q9NRG4 433 aa2.35□□□□□ -2.03
VPS13A-208ENST00000423463 TXNDC16Q9P2K2 825 aa2.35□□□□□ -2.03
VPS13A-208ENST00000423463 RARRES3Q9UL19 164 aa2.35□□□□□ -2.03
VPS13A-208ENST00000423463 ICKQ9UPZ9 632 aa2.35□□□□□ -2.03
VPS13A-208ENST00000423463 TDRKHQ9Y2W6 561 aaKnown RBP2.35□□□□□ -2.03
VPS13A-208ENST00000423463 PTGDR2Q9Y5Y4 395 aa2.35□□□□□ -2.03
VPS13A-208ENST00000423463 RP1P56715 2156 aa2.35□□□□□ -2.03
VPS13A-208ENST00000423463 TP53BP1Q12888 1972 aaPredicted RBP2.35□□□□□ -2.03
VPS13A-208ENST00000423463 ZNF106Q9H2Y7 1883 aaKnown RBP2.34□□□□□ -2.03
VPS13A-208ENST00000423463 IGHV5-51A0A0C4DH38 117 aa2.34□□□□□ -2.03
VPS13A-208ENST00000423463 A0A0J9YY10 115 aa2.34□□□□□ -2.03
VPS13A-208ENST00000423463 GSAPA4D1B5 854 aa2.34□□□□□ -2.03
VPS13A-208ENST00000423463 SRRM3A6NNA2 597 aaPredicted RBP2.34□□□□□ -2.03
VPS13A-208ENST00000423463 ARHGEF33A8MVX0 844 aa2.34□□□□□ -2.03
VPS13A-208ENST00000423463 TEX22C9J3V5 150 aa2.34□□□□□ -2.03
VPS13A-208ENST00000423463 STMND1H3BQB6 276 aa2.34□□□□□ -2.03
VPS13A-208ENST00000423463 POLR1CO15160 346 aaPredicted RBP2.34□□□□□ -2.03
VPS13A-208ENST00000423463 C1QAP02745 245 aa2.34□□□□□ -2.03
VPS13A-208ENST00000423463 MT-ND3P03897 115 aa2.34□□□□□ -2.03
VPS13A-208ENST00000423463 CHRM4P08173 479 aa2.34□□□□□ -2.03
VPS13A-208ENST00000423463 HIST1H2AGP0C0S8 130 aaPredicted RBP2.34□□□□□ -2.03
VPS13A-208ENST00000423463 LIPCP11150 499 aa2.34□□□□□ -2.03
VPS13A-208ENST00000423463 UGT2B7P16662 529 aa2.34□□□□□ -2.03
VPS13A-208ENST00000423463 ITIH1P19827 911 aa2.34□□□□□ -2.03
VPS13A-208ENST00000423463 HIST1H2ADP20671 130 aa2.34□□□□□ -2.03
VPS13A-208ENST00000423463 CYP2A7P20853 494 aa2.34□□□□□ -2.03
VPS13A-208ENST00000423463 HRH2P25021 359 aa2.34□□□□□ -2.03
VPS13A-208ENST00000423463 UCNP55089 124 aa2.34□□□□□ -2.03
VPS13A-208ENST00000423463 CDKN2DP55273 166 aa2.34□□□□□ -2.03
VPS13A-208ENST00000423463 TAS2R39P59534 338 aa2.34□□□□□ -2.03
VPS13A-208ENST00000423463 ABATP80404 500 aa2.34□□□□□ -2.03
VPS13A-208ENST00000423463 RELAQ04206 551 aa2.34□□□□□ -2.03
VPS13A-208ENST00000423463 FOXM1Q08050 763 aa2.34□□□□□ -2.03
VPS13A-208ENST00000423463 FIGLAQ6QHK4 219 aa2.34□□□□□ -2.03
VPS13A-208ENST00000423463 SPESP1Q6UW49 350 aa2.34□□□□□ -2.03
VPS13A-208ENST00000423463 H1FNTQ75WM6 255 aaPredicted RBP2.34□□□□□ -2.03
VPS13A-208ENST00000423463 TRMT10CQ7L0Y3 403 aaKnown RBP2.34□□□□□ -2.03
VPS13A-208ENST00000423463 CCDC91Q7Z6B0 441 aa2.34□□□□□ -2.03
VPS13A-208ENST00000423463 IGFN1Q86VF2 1251 aa2.34□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 50.1 ms