RNA–Protein interactions for RNA: ENST00000423058.6

SCN1A-204, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SCN1A, Length 8,191 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-204ENST00000423058 PHTF2Q8N3S3 785 aa6.54□□□□□ -1.36
SCN1A-204ENST00000423058 SAMD12Q8N8I0 201 aa6.54□□□□□ -1.36
SCN1A-204ENST00000423058 OR4N2Q8NGD1 307 aa6.54□□□□□ -1.36
SCN1A-204ENST00000423058 OR8K3Q8NH51 312 aa6.54□□□□□ -1.36
SCN1A-204ENST00000423058 PEX11GQ96HA9 241 aa6.54□□□□□ -1.36
SCN1A-204ENST00000423058 PRKYO43930 277 aa6.54□□□□□ -1.36
SCN1A-204ENST00000423058 RPA4Q13156 261 aa6.54□□□□□ -1.36
SCN1A-204ENST00000423058 KLF1Q13351 362 aaPredicted RBP6.54□□□□□ -1.36
SCN1A-204ENST00000423058 GRIN2CQ14957 1233 aa6.54□□□□□ -1.36
SCN1A-204ENST00000423058 RAB41Q5JT25 222 aa6.54□□□□□ -1.36
SCN1A-204ENST00000423058 TMEM71Q6P5X7 295 aa6.54□□□□□ -1.36
SCN1A-204ENST00000423058 KCNIP4Q6PIL6 250 aa6.54□□□□□ -1.36
SCN1A-204ENST00000423058 TMEM173Q86WV6 379 aaPredicted RBP6.54□□□□□ -1.36
SCN1A-204ENST00000423058 CARM1Q86X55 608 aa6.54□□□□□ -1.36
SCN1A-204ENST00000423058 RPLP0P6Q8NHW5 317 aa6.54□□□□□ -1.36
SCN1A-204ENST00000423058 IGSF21Q96ID5 467 aa6.54□□□□□ -1.36
SCN1A-204ENST00000423058 TEPSINQ96N21 525 aa6.54□□□□□ -1.36
SCN1A-204ENST00000423058 SECISBP2Q96T21 854 aaKnown RBP6.54□□□□□ -1.36
SCN1A-204ENST00000423058 SGIP1Q9BQI5 828 aa6.54□□□□□ -1.36
SCN1A-204ENST00000423058 DOHHQ9BU89 302 aa6.54□□□□□ -1.36
SCN1A-204ENST00000423058 SLC17A9Q9BYT1 436 aa6.54□□□□□ -1.36
SCN1A-204ENST00000423058 GCM1Q9NP62 436 aa6.54□□□□□ -1.36
SCN1A-204ENST00000423058 SARDHQ9UL12 918 aa6.54□□□□□ -1.36
SCN1A-204ENST00000423058 PIAS3Q9Y6X2 628 aa6.54□□□□□ -1.36
SCN1A-204ENST00000423058 CICQ96RK0 1608 aaPredicted RBP6.54□□□□□ -1.36
SCN1A-204ENST00000423058 F5H0A9 414 aaPredicted RBP6.53□□□□□ -1.36
SCN1A-204ENST00000423058 EI24O14681 340 aa6.53□□□□□ -1.36
SCN1A-204ENST00000423058 SOX14O95416 240 aa6.53□□□□□ -1.36
SCN1A-204ENST00000423058 OPN1SWP03999 348 aa6.53□□□□□ -1.36
SCN1A-204ENST00000423058 SERPINE2P07093 398 aa6.53□□□□□ -1.36
SCN1A-204ENST00000423058 BMP6P22004 513 aa6.53□□□□□ -1.36
SCN1A-204ENST00000423058 HNRNPA2B1P22626 353 aaKnown RBP6.53□□□□□ -1.36
SCN1A-204ENST00000423058 CXCL12P48061 93 aa6.53□□□□□ -1.36
SCN1A-204ENST00000423058 ZNF45Q02386 682 aa6.53□□□□□ -1.36
SCN1A-204ENST00000423058 TGFBIQ15582 683 aa6.53□□□□□ -1.36
SCN1A-204ENST00000423058 RNF175Q8N4F7 328 aa6.53□□□□□ -1.36
SCN1A-204ENST00000423058 FER1L6-AS2Q96M78 137 aa6.53□□□□□ -1.36
SCN1A-204ENST00000423058 SNX18Q96RF0 628 aa6.53□□□□□ -1.36
SCN1A-204ENST00000423058 SERINC2Q96SA4 455 aa6.53□□□□□ -1.36
SCN1A-204ENST00000423058 PIP5K1AQ99755 562 aa6.53□□□□□ -1.36
SCN1A-204ENST00000423058 OAZ3Q9UMX2 235 aa6.53□□□□□ -1.36
SCN1A-204ENST00000423058 RNF11Q9Y3C5 154 aa6.53□□□□□ -1.36
SCN1A-204ENST00000423058 FBXO7Q9Y3I1 522 aa6.53□□□□□ -1.36
SCN1A-204ENST00000423058 SH2D7A6NKC9 451 aaPredicted RBP6.53□□□□□ -1.36
SCN1A-204ENST00000423058 FOSL1P15407 271 aa6.53□□□□□ -1.36
SCN1A-204ENST00000423058 TIMP2P16035 220 aa6.53□□□□□ -1.36
SCN1A-204ENST00000423058 ADH7P40394 386 aa6.53□□□□□ -1.36
SCN1A-204ENST00000423058 LSSP48449 732 aa6.53□□□□□ -1.36
SCN1A-204ENST00000423058 STC1P52823 247 aa6.53□□□□□ -1.36
SCN1A-204ENST00000423058 LGALS4P56470 323 aa6.53□□□□□ -1.36
SCN1A-204ENST00000423058 PHC1P78364 1004 aa6.53□□□□□ -1.36
SCN1A-204ENST00000423058 GPR176Q14439 515 aa6.53□□□□□ -1.36
SCN1A-204ENST00000423058 CEACAM19Q7Z692 300 aa6.53□□□□□ -1.36
SCN1A-204ENST00000423058 PRR18Q8N4B5 295 aa6.53□□□□□ -1.36
SCN1A-204ENST00000423058 OR51G2Q8NGK0 314 aa6.53□□□□□ -1.36
SCN1A-204ENST00000423058 SNAPC3Q92966 411 aa6.53□□□□□ -1.36
SCN1A-204ENST00000423058 TMBIM1Q969X1 311 aa6.53□□□□□ -1.36
SCN1A-204ENST00000423058 EVA1AQ9H8M9 152 aa6.53□□□□□ -1.36
SCN1A-204ENST00000423058 ZNF355PQ9NSJ1 428 aa6.53□□□□□ -1.36
SCN1A-204ENST00000423058 GDE1Q9NZC3 331 aa6.53□□□□□ -1.36
SCN1A-204ENST00000423058 TTC24A2A3L6 582 aaPredicted RBP6.53□□□□□ -1.36
SCN1A-204ENST00000423058 SMAD9O15198 467 aaKnown RBP6.53□□□□□ -1.36
SCN1A-204ENST00000423058 TSPAN15O95858 294 aa6.53□□□□□ -1.36
SCN1A-204ENST00000423058 TGM6O95932 706 aa6.53□□□□□ -1.36
SCN1A-204ENST00000423058 CLEC3BP05452 202 aa6.53□□□□□ -1.36
SCN1A-204ENST00000423058 CAMLGP49069 296 aa6.53□□□□□ -1.36
SCN1A-204ENST00000423058 CX3CR1P49238 355 aa6.53□□□□□ -1.36
SCN1A-204ENST00000423058 KCNQ1P51787 676 aa6.53□□□□□ -1.36
SCN1A-204ENST00000423058 GLO1Q04760 184 aa6.53□□□□□ -1.36
SCN1A-204ENST00000423058 RING1Q06587 406 aa6.53□□□□□ -1.36
SCN1A-204ENST00000423058 DEFB134Q4QY38 66 aa6.53□□□□□ -1.36
SCN1A-204ENST00000423058 C6orf183Q5T699 404 aa6.53□□□□□ -1.36
SCN1A-204ENST00000423058 USP53Q70EK8 1073 aa6.53□□□□□ -1.36
SCN1A-204ENST00000423058 OR1S1Q8NH92 325 aa6.53□□□□□ -1.36
SCN1A-204ENST00000423058 C17orf50Q8WW18 174 aa6.53□□□□□ -1.36
SCN1A-204ENST00000423058 BADQ92934 168 aa6.53□□□□□ -1.36
SCN1A-204ENST00000423058 OR4K3Q96R72 315 aa6.53□□□□□ -1.36
SCN1A-204ENST00000423058 UBL7Q96S82 380 aaPredicted RBP6.53□□□□□ -1.36
SCN1A-204ENST00000423058 ZPBPQ9BS86 351 aa6.53□□□□□ -1.36
SCN1A-204ENST00000423058 FUCA2Q9BTY2 467 aa6.53□□□□□ -1.36
SCN1A-204ENST00000423058 STEAP1Q9UHE8 339 aa6.53□□□□□ -1.36
SCN1A-204ENST00000423058 POMPQ9Y244 141 aa6.53□□□□□ -1.36
SCN1A-204ENST00000423058 SLC35A3Q9Y2D2 325 aa6.53□□□□□ -1.36
SCN1A-204ENST00000423058 PTRH2Q9Y3E5 179 aaKnown RBP6.53□□□□□ -1.36
SCN1A-204ENST00000423058 ENTPD2Q9Y5L3 495 aa6.53□□□□□ -1.36
SCN1A-204ENST00000423058 A0A096LPI6 279 aa6.53□□□□□ -1.36
SCN1A-204ENST00000423058 J3KR12 359 aa6.53□□□□□ -1.36
SCN1A-204ENST00000423058 SLITRK5O94991 958 aa6.53□□□□□ -1.36
SCN1A-204ENST00000423058 GLB1P16278 677 aa6.53□□□□□ -1.36
SCN1A-204ENST00000423058 CRYZQ08257 329 aaKnown RBP6.53□□□□□ -1.36
SCN1A-204ENST00000423058 ZNF616Q08AN1 781 aa6.53□□□□□ -1.36
SCN1A-204ENST00000423058 MSMO1Q15800 293 aa6.53□□□□□ -1.36
SCN1A-204ENST00000423058 UBE2UQ5VVX9 321 aa6.53□□□□□ -1.36
SCN1A-204ENST00000423058 TMPRSS7Q7RTY8 843 aa6.53□□□□□ -1.36
SCN1A-204ENST00000423058 TMEM110Q86TL2 294 aa6.53□□□□□ -1.36
SCN1A-204ENST00000423058 KDM1BQ8NB78 822 aa6.53□□□□□ -1.36
SCN1A-204ENST00000423058 OR5D14Q8NGL3 314 aa6.53□□□□□ -1.36
SCN1A-204ENST00000423058 PXYLP1Q8TE99 480 aa6.53□□□□□ -1.36
SCN1A-204ENST00000423058 ALG3Q92685 438 aa6.53□□□□□ -1.36
SCN1A-204ENST00000423058 MAL2Q969L2 176 aa6.53□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms