RNA–Protein interactions for RNA: ENST00000417656.6

SKA1-203, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 2 BASIC

Gene SKA1, Length 1,095 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-203ENST00000417656 FBXW4P57775 412 aa11.5□□□□□ -0.57
SKA1-203ENST00000417656 GPR85P60893 370 aa11.5□□□□□ -0.57
SKA1-203ENST00000417656 DCAF7P61962 342 aa11.5□□□□□ -0.57
SKA1-203ENST00000417656 SRSF11Q05519 484 aaKnown RBP11.5□□□□□ -0.57
SKA1-203ENST00000417656 PLCXD2Q0VAA5 305 aa11.5□□□□□ -0.57
SKA1-203ENST00000417656 MLC1Q15049 377 aa11.5□□□□□ -0.57
SKA1-203ENST00000417656 RPS6KA2Q15349 733 aa11.5□□□□□ -0.57
SKA1-203ENST00000417656 FAM174BQ3ZCQ3 159 aa11.5□□□□□ -0.57
SKA1-203ENST00000417656 PDCD4Q53EL6 469 aaKnown RBP11.5□□□□□ -0.57
SKA1-203ENST00000417656 ANKRD46Q86W74 232 aa11.5□□□□□ -0.57
SKA1-203ENST00000417656 GOLM1Q8NBJ4 401 aa11.5□□□□□ -0.57
SKA1-203ENST00000417656 OR10G3Q8NGC4 313 aa11.5□□□□□ -0.57
SKA1-203ENST00000417656 OR5M3Q8NGP4 307 aa11.5□□□□□ -0.57
SKA1-203ENST00000417656 FBXO30Q8TB52 745 aa11.5□□□□□ -0.57
SKA1-203ENST00000417656 GRHL3Q8TE85 626 aa11.5□□□□□ -0.57
SKA1-203ENST00000417656 OR5P2Q8WZ92 322 aa11.5□□□□□ -0.57
SKA1-203ENST00000417656 MIB2Q96AX9 1013 aa11.5□□□□□ -0.57
SKA1-203ENST00000417656 OMA1Q96E52 524 aa11.5□□□□□ -0.57
SKA1-203ENST00000417656 FAM120BQ96EK7 910 aaKnown RBP11.5□□□□□ -0.57
SKA1-203ENST00000417656 FRMD6Q96NE9 622 aa11.5□□□□□ -0.57
SKA1-203ENST00000417656 MS4A4EQ96PG1 132 aa11.5□□□□□ -0.57
SKA1-203ENST00000417656 CCDC28BQ9BUN5 200 aa11.5□□□□□ -0.57
SKA1-203ENST00000417656 CXorf36Q9H7Y0 433 aa11.5□□□□□ -0.57
SKA1-203ENST00000417656 DEPPQ9NTK1 212 aa11.5□□□□□ -0.57
SKA1-203ENST00000417656 FGFR1OP2Q9NVK5 253 aa11.5□□□□□ -0.57
SKA1-203ENST00000417656 DCTN4Q9UJW0 460 aa11.5□□□□□ -0.57
SKA1-203ENST00000417656 GPR55Q9Y2T6 319 aaPredicted RBP11.5□□□□□ -0.57
SKA1-203ENST00000417656 SNX8Q9Y5X2 465 aa11.5□□□□□ -0.57
SKA1-203ENST00000417656 NPFFR2Q9Y5X5 522 aa11.5□□□□□ -0.57
SKA1-203ENST00000417656 COPG1Q9Y678 874 aaKnown RBP11.5□□□□□ -0.57
SKA1-203ENST00000417656 GIMAP1-GIMAP5A0A087WTJ2 511 aa11.49□□□□□ -0.57
SKA1-203ENST00000417656 ACOX3O15254 700 aa11.49□□□□□ -0.57
SKA1-203ENST00000417656 CFLARO15519 480 aa11.49□□□□□ -0.57
SKA1-203ENST00000417656 EMC8O43402 210 aa11.49□□□□□ -0.57
SKA1-203ENST00000417656 CT45A8P0DMV1 189 aa11.49□□□□□ -0.57
SKA1-203ENST00000417656 CT45A9P0DMV2 189 aa11.49□□□□□ -0.57
SKA1-203ENST00000417656 DRD5P21918 477 aa11.49□□□□□ -0.57
SKA1-203ENST00000417656 S100A3P33764 101 aa11.49□□□□□ -0.57
SKA1-203ENST00000417656 MDH1P40925 334 aaKnown RBP11.49□□□□□ -0.57
SKA1-203ENST00000417656 RFC3P40938 356 aa11.49□□□□□ -0.57
SKA1-203ENST00000417656 TMED10P49755 219 aaKnown RBP11.49□□□□□ -0.57
SKA1-203ENST00000417656 MEOX1P50221 254 aa11.49□□□□□ -0.57
SKA1-203ENST00000417656 DGKQP52824 942 aa11.49□□□□□ -0.57
SKA1-203ENST00000417656 PRKAG1P54619 331 aa11.49□□□□□ -0.57
SKA1-203ENST00000417656 HBA1P69905 142 aa11.49□□□□□ -0.57
SKA1-203ENST00000417656 PHC1P78364 1004 aa11.49□□□□□ -0.57
SKA1-203ENST00000417656 PSG6Q00889 435 aa11.49□□□□□ -0.57
SKA1-203ENST00000417656 IGFBP7Q16270 282 aa11.49□□□□□ -0.57
SKA1-203ENST00000417656 NTRK2Q16620 822 aa11.49□□□□□ -0.57
SKA1-203ENST00000417656 GSTA3Q16772 222 aa11.49□□□□□ -0.57
SKA1-203ENST00000417656 DPY19L1Q2PZI1 675 aa11.49□□□□□ -0.57
SKA1-203ENST00000417656 SPDYE7PQ495Y7 208 aa11.49□□□□□ -0.57
SKA1-203ENST00000417656 CT45A2Q5DJT8 189 aa11.49□□□□□ -0.57
SKA1-203ENST00000417656 PRAMEF20Q5VT98 475 aa11.49□□□□□ -0.57
SKA1-203ENST00000417656 PNPLA5Q7Z6Z6 429 aaPredicted RBP11.49□□□□□ -0.57
SKA1-203ENST00000417656 SLC44A2Q8IWA5 706 aaPredicted RBP11.49□□□□□ -0.57
SKA1-203ENST00000417656 DND1Q8IYX4 353 aaKnown RBP11.49□□□□□ -0.57
SKA1-203ENST00000417656 SLC34A3Q8N130 599 aa11.49□□□□□ -0.57
SKA1-203ENST00000417656 CPSF7Q8N684 471 aaKnown RBP11.49□□□□□ -0.57
SKA1-203ENST00000417656 NATD1Q8N6N6 113 aa11.49□□□□□ -0.57
SKA1-203ENST00000417656 FAM98AQ8NCA5 519 aaKnown RBP11.49□□□□□ -0.57
SKA1-203ENST00000417656 NUP43Q8NFH3 380 aa11.49□□□□□ -0.57
SKA1-203ENST00000417656 OR8J2Q8NGG1 315 aa11.49□□□□□ -0.57
SKA1-203ENST00000417656 OR9I1Q8NGQ6 314 aa11.49□□□□□ -0.57
SKA1-203ENST00000417656 HSPBAP1Q96EW2 488 aa11.49□□□□□ -0.57
SKA1-203ENST00000417656 GIMAP5Q96F15 307 aa11.49□□□□□ -0.57
SKA1-203ENST00000417656 SGCZQ96LD1 299 aa11.49□□□□□ -0.57
SKA1-203ENST00000417656 ZBTB18Q99592 522 aa11.49□□□□□ -0.57
SKA1-203ENST00000417656 LMF2Q9BU23 707 aaKnown RBP11.49□□□□□ -0.57
SKA1-203ENST00000417656 NEUROD4Q9HD90 331 aa11.49□□□□□ -0.57
SKA1-203ENST00000417656 SH2D2AQ9NP31 389 aa11.49□□□□□ -0.57
SKA1-203ENST00000417656 SDR39U1Q9NRG7 319 aaPredicted RBP11.49□□□□□ -0.57
SKA1-203ENST00000417656 ZCCHC3Q9NUD5 404 aaKnown RBP11.49□□□□□ -0.57
SKA1-203ENST00000417656 EML6Q6ZMW3 1958 aa11.48□□□□□ -0.57
SKA1-203ENST00000417656 A0A0G2JND7 137 aa11.48□□□□□ -0.57
SKA1-203ENST00000417656 PINLYPA6NC86 204 aa11.48□□□□□ -0.57
SKA1-203ENST00000417656 ASPDHA6ND91 283 aa11.48□□□□□ -0.57
SKA1-203ENST00000417656 RNASET2O00584 256 aaKnown RBP11.48□□□□□ -0.57
SKA1-203ENST00000417656 TO15178 435 aa11.48□□□□□ -0.57
SKA1-203ENST00000417656 PEX1O43933 1283 aa11.48□□□□□ -0.57
SKA1-203ENST00000417656 PPM1BO75688 479 aa11.48□□□□□ -0.57
SKA1-203ENST00000417656 P04436 131 aa11.48□□□□□ -0.57
SKA1-203ENST00000417656 VIMP08670 466 aaKnown RBP11.48□□□□□ -0.57
SKA1-203ENST00000417656 ACP2P11117 423 aa11.48□□□□□ -0.57
SKA1-203ENST00000417656 DNASE1L1P49184 302 aa11.48□□□□□ -0.57
SKA1-203ENST00000417656 STX1BP61266 288 aa11.48□□□□□ -0.57
SKA1-203ENST00000417656 FOXK1P85037 733 aa11.48□□□□□ -0.57
SKA1-203ENST00000417656 PRR5P85299 388 aa11.48□□□□□ -0.57
SKA1-203ENST00000417656 SF3A3Q12874 501 aaKnown RBP eCLIP11.48□□□□□ -0.57
SKA1-203ENST00000417656 TP53BP2Q13625 1128 aa11.48□□□□□ -0.57
SKA1-203ENST00000417656 DESI1Q6ICB0 168 aa11.48□□□□□ -0.57
SKA1-203ENST00000417656 CGB2Q6NT52 195 aa11.48□□□□□ -0.57
SKA1-203ENST00000417656 MFSD12Q6NUT3 480 aa11.48□□□□□ -0.57
SKA1-203ENST00000417656 PAOXQ6QHF9 649 aa11.48□□□□□ -0.57
SKA1-203ENST00000417656 SULF2Q8IWU5 870 aa11.48□□□□□ -0.57
SKA1-203ENST00000417656 MIER2Q8N344 545 aa11.48□□□□□ -0.57
SKA1-203ENST00000417656 FBXW8Q8N3Y1 598 aa11.48□□□□□ -0.57
SKA1-203ENST00000417656 BCORP1Q8N888 145 aa11.48□□□□□ -0.57
SKA1-203ENST00000417656 OR4N2Q8NGD1 307 aa11.48□□□□□ -0.57
SKA1-203ENST00000417656 OR4A15Q8NGL6 344 aa11.48□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms