RNA–Protein interactions for RNA: ENST00000399489.5

HMGB1-204, Transcript of high mobility group box 1, humanhuman

TSL 1 (best) BASIC

Gene HMGB1, Length 1,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-204ENST00000399489 KLHL22Q53GT1 634 aa3.72□□□□□ -1.81
HMGB1-204ENST00000399489 PDZK1Q5T2W1 519 aa3.72□□□□□ -1.81
HMGB1-204ENST00000399489 LYPLAL1Q5VWZ2 237 aa3.72□□□□□ -1.81
HMGB1-204ENST00000399489 CDC42EP5Q6NZY7 148 aa3.72□□□□□ -1.81
HMGB1-204ENST00000399489 TMEM107Q6UX40 140 aa3.72□□□□□ -1.81
HMGB1-204ENST00000399489 WASH2PQ6VEQ5 465 aa3.72□□□□□ -1.81
HMGB1-204ENST00000399489 TRMT10CQ7L0Y3 403 aaKnown RBP3.72□□□□□ -1.81
HMGB1-204ENST00000399489 PARGQ86W56 976 aa3.72□□□□□ -1.81
HMGB1-204ENST00000399489 MICU2Q8IYU8 434 aa3.72□□□□□ -1.81
HMGB1-204ENST00000399489 FAM58AQ8N1B3 248 aa3.72□□□□□ -1.81
HMGB1-204ENST00000399489 PYROXD2Q8N2H3 581 aa3.72□□□□□ -1.81
HMGB1-204ENST00000399489 SPEM1Q8N4L4 309 aa3.72□□□□□ -1.81
HMGB1-204ENST00000399489 CEP112Q8N8E3 955 aa3.72□□□□□ -1.81
HMGB1-204ENST00000399489 TEX45Q8NA69 505 aa3.72□□□□□ -1.81
HMGB1-204ENST00000399489 FNDC5Q8NAU1 212 aa3.72□□□□□ -1.81
HMGB1-204ENST00000399489 OR13J1Q8NGT2 312 aa3.72□□□□□ -1.81
HMGB1-204ENST00000399489 RNF128Q8TEB7 428 aa3.72□□□□□ -1.81
HMGB1-204ENST00000399489 LHX4Q969G2 390 aa3.72□□□□□ -1.81
HMGB1-204ENST00000399489 TSACCQ96A04 125 aaPredicted RBP3.72□□□□□ -1.81
HMGB1-204ENST00000399489 SLC47A1Q96FL8 570 aa3.72□□□□□ -1.81
HMGB1-204ENST00000399489 RBM41Q96IZ5 413 aaKnown RBP3.72□□□□□ -1.81
HMGB1-204ENST00000399489 TSNARE1Q96NA8 513 aa3.72□□□□□ -1.81
HMGB1-204ENST00000399489 TGM7Q96PF1 710 aa3.72□□□□□ -1.81
HMGB1-204ENST00000399489 TGS1Q96RS0 853 aaKnown RBP3.72□□□□□ -1.81
HMGB1-204ENST00000399489 S1PR3Q99500 378 aa3.72□□□□□ -1.81
HMGB1-204ENST00000399489 UBAC1Q9BSL1 405 aa3.72□□□□□ -1.81
HMGB1-204ENST00000399489 IL1RL2Q9HB29 575 aa3.72□□□□□ -1.81
HMGB1-204ENST00000399489 MOV10Q9HCE1 1003 aaKnown RBP3.72□□□□□ -1.81
HMGB1-204ENST00000399489 MRPS30Q9NP92 439 aaKnown RBP3.72□□□□□ -1.81
HMGB1-204ENST00000399489 ACKR4Q9NPB9 350 aa3.72□□□□□ -1.81
HMGB1-204ENST00000399489 POT1Q9NUX5 634 aa3.72□□□□□ -1.81
HMGB1-204ENST00000399489 MIOSQ9NXC5 875 aa3.72□□□□□ -1.81
HMGB1-204ENST00000399489 NLGN3Q9NZ94 848 aa3.72□□□□□ -1.81
HMGB1-204ENST00000399489 ZKSCAN7Q9P0L1 754 aaPredicted RBP3.72□□□□□ -1.81
HMGB1-204ENST00000399489 DDX19BQ9UMR2 479 aa3.72□□□□□ -1.81
HMGB1-204ENST00000399489 DIMT1Q9UNQ2 313 aaKnown RBP3.72□□□□□ -1.81
HMGB1-204ENST00000399489 WDR45Q9Y484 360 aa3.72□□□□□ -1.81
HMGB1-204ENST00000399489 FHAD1B1AJZ9 1412 aa3.72□□□□□ -1.81
HMGB1-204ENST00000399489 ADAMTS12P58397 1594 aa3.72□□□□□ -1.81
HMGB1-204ENST00000399489 ADCY10Q96PN6 1610 aa3.71□□□□□ -1.82
HMGB1-204ENST00000399489 MTMR11A4FU01 709 aa3.71□□□□□ -1.82
HMGB1-204ENST00000399489 DPPA5A6NC42 116 aa3.71□□□□□ -1.82
HMGB1-204ENST00000399489 I6L893 689 aaPredicted RBP3.71□□□□□ -1.82
HMGB1-204ENST00000399489 PDLIM1O00151 329 aa3.71□□□□□ -1.82
HMGB1-204ENST00000399489 WWP2O00308 870 aa3.71□□□□□ -1.82
HMGB1-204ENST00000399489 ARPC2O15144 300 aa3.71□□□□□ -1.82
HMGB1-204ENST00000399489 INPPL1O15357 1258 aa3.71□□□□□ -1.82
HMGB1-204ENST00000399489 STX7O15400 261 aaKnown RBP3.71□□□□□ -1.82
HMGB1-204ENST00000399489 GPR137BO60478 399 aa3.71□□□□□ -1.82
HMGB1-204ENST00000399489 ATP5HO75947 161 aa3.71□□□□□ -1.82
HMGB1-204ENST00000399489 SCGNO76038 276 aa3.71□□□□□ -1.82
HMGB1-204ENST00000399489 CDK14O94921 469 aa3.71□□□□□ -1.82
HMGB1-204ENST00000399489 H6PDO95479 791 aa3.71□□□□□ -1.82
HMGB1-204ENST00000399489 F7P08709 466 aaPredicted RBP3.71□□□□□ -1.82
HMGB1-204ENST00000399489 PSMA2P25787 234 aa3.71□□□□□ -1.82
HMGB1-204ENST00000399489 MSNP26038 577 aaKnown RBP3.71□□□□□ -1.82
HMGB1-204ENST00000399489 HOXA6P31267 233 aa3.71□□□□□ -1.82
HMGB1-204ENST00000399489 OTX1P32242 354 aaPredicted RBP3.71□□□□□ -1.82
HMGB1-204ENST00000399489 MNDAP41218 407 aa3.71□□□□□ -1.82
HMGB1-204ENST00000399489 NPY2RP49146 381 aa3.71□□□□□ -1.82
HMGB1-204ENST00000399489 VAMP7P51809 220 aa3.71□□□□□ -1.82
HMGB1-204ENST00000399489 MNAT1P51948 309 aa3.71□□□□□ -1.82
HMGB1-204ENST00000399489 CDH12P55289 794 aa3.71□□□□□ -1.82
HMGB1-204ENST00000399489 VBP1P61758 197 aa3.71□□□□□ -1.82
HMGB1-204ENST00000399489 NAAAQ02083 359 aa3.71□□□□□ -1.82
HMGB1-204ENST00000399489 KDSRQ06136 332 aa3.71□□□□□ -1.82
HMGB1-204ENST00000399489 GABPAQ06546 454 aa3.71□□□□□ -1.82
HMGB1-204ENST00000399489 RBMS2Q15434 407 aaKnown RBP3.71□□□□□ -1.82
HMGB1-204ENST00000399489 SYPL1Q16563 259 aa3.71□□□□□ -1.82
HMGB1-204ENST00000399489 MICBQ29980 383 aa3.71□□□□□ -1.82
HMGB1-204ENST00000399489 C20orf194Q5TEA3 1177 aa3.71□□□□□ -1.82
HMGB1-204ENST00000399489 LCN1P1Q5VSP4 162 aa3.71□□□□□ -1.82
HMGB1-204ENST00000399489 RUSC1-AS1Q66K80 236 aa3.71□□□□□ -1.82
HMGB1-204ENST00000399489 OR2A2Q6IF42 318 aa3.71□□□□□ -1.82
HMGB1-204ENST00000399489 LINGO4Q6UY18 593 aa3.71□□□□□ -1.82
HMGB1-204ENST00000399489 STXBP4Q6ZWJ1 553 aa3.71□□□□□ -1.82
HMGB1-204ENST00000399489 CYP4V2Q6ZWL3 525 aaPredicted RBP3.71□□□□□ -1.82
HMGB1-204ENST00000399489 SHFQ7M4L6 423 aa3.71□□□□□ -1.82
HMGB1-204ENST00000399489 TRMT1LQ7Z2T5 733 aaKnown RBP3.71□□□□□ -1.82
HMGB1-204ENST00000399489 GOLGA7Q7Z5G4 137 aa3.71□□□□□ -1.82
HMGB1-204ENST00000399489 SCD5Q86SK9 330 aa3.71□□□□□ -1.82
HMGB1-204ENST00000399489 PATL1Q86TB9 770 aaKnown RBP3.71□□□□□ -1.82
HMGB1-204ENST00000399489 ALLCQ8N6M5 410 aa3.71□□□□□ -1.82
HMGB1-204ENST00000399489 PQLC3Q8N755 202 aa3.71□□□□□ -1.82
HMGB1-204ENST00000399489 FAM86B1Q8N7N1 296 aa3.71□□□□□ -1.82
HMGB1-204ENST00000399489 NOA1Q8NC60 698 aaKnown RBP3.71□□□□□ -1.82
HMGB1-204ENST00000399489 OR1L4Q8NGR5 311 aa3.71□□□□□ -1.82
HMGB1-204ENST00000399489 OR5R1Q8NH85 324 aa3.71□□□□□ -1.82
HMGB1-204ENST00000399489 FGFBP3Q8TAT2 258 aa3.71□□□□□ -1.82
HMGB1-204ENST00000399489 PPP4R1Q8TF05 950 aa3.71□□□□□ -1.82
HMGB1-204ENST00000399489 SCFD1Q8WVM8 642 aa3.71□□□□□ -1.82
HMGB1-204ENST00000399489 DNAAF4Q8WXU2 420 aa3.71□□□□□ -1.82
HMGB1-204ENST00000399489 SLC38A4Q969I6 547 aa3.71□□□□□ -1.82
HMGB1-204ENST00000399489 CIDECQ96AQ7 238 aaPredicted RBP3.71□□□□□ -1.82
HMGB1-204ENST00000399489 SH3YL1Q96HL8 342 aaPredicted RBP3.71□□□□□ -1.82
HMGB1-204ENST00000399489 EFHD1Q9BUP0 239 aa3.71□□□□□ -1.82
HMGB1-204ENST00000399489 TEKT3Q9BXF9 490 aa3.71□□□□□ -1.82
HMGB1-204ENST00000399489 VN1R1Q9GZP7 353 aa3.71□□□□□ -1.82
HMGB1-204ENST00000399489 ARRDC1-AS1Q9H2J1 176 aa3.71□□□□□ -1.82
HMGB1-204ENST00000399489 ELOVL6Q9H5J4 265 aa3.71□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms