RNA–Protein interactions for RNA: ENST00000395653.9

CLN3-207, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,430 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-207ENST00000395653 DPY30Q9C005 99 aa19.99■□□□□ 0.79
CLN3-207ENST00000395653 AIG1Q9NVV5 245 aa19.99■□□□□ 0.79
CLN3-207ENST00000395653 NTMQ9P121 344 aa19.99■□□□□ 0.79
CLN3-207ENST00000395653 USH1CQ9Y6N9 552 aa19.99■□□□□ 0.79
CLN3-207ENST00000395653 ANKRD28O15084 1053 aa19.98■□□□□ 0.79
CLN3-207ENST00000395653 NME6O75414 186 aaPredicted RBP19.98■□□□□ 0.79
CLN3-207ENST00000395653 ALDOCP09972 364 aaKnown RBP19.98■□□□□ 0.79
CLN3-207ENST00000395653 CORO7P57737 925 aa19.98■□□□□ 0.79
CLN3-207ENST00000395653 FBXW4P57775 412 aa19.98■□□□□ 0.79
CLN3-207ENST00000395653 PLCXD2Q0VAA5 305 aa19.98■□□□□ 0.79
CLN3-207ENST00000395653 ZNF155Q12901 538 aaPredicted RBP19.98■□□□□ 0.79
CLN3-207ENST00000395653 MRPL49Q13405 166 aaKnown RBP19.98■□□□□ 0.79
CLN3-207ENST00000395653 ELOAQ14241 798 aaKnown RBP19.98■□□□□ 0.79
CLN3-207ENST00000395653 SLC9B1Q4ZJI4 515 aa19.98■□□□□ 0.79
CLN3-207ENST00000395653 NPSR1Q6W5P4 371 aa19.98■□□□□ 0.79
CLN3-207ENST00000395653 RGS9BPQ6ZS82 235 aa19.98■□□□□ 0.79
CLN3-207ENST00000395653 GK5Q6ZS86 529 aa19.98■□□□□ 0.79
CLN3-207ENST00000395653 SLC34A3Q8N130 599 aa19.98■□□□□ 0.79
CLN3-207ENST00000395653 NUDT8Q8WV74 236 aa19.98■□□□□ 0.79
CLN3-207ENST00000395653 OR5P2Q8WZ92 322 aa19.98■□□□□ 0.79
CLN3-207ENST00000395653 OMA1Q96E52 524 aa19.98■□□□□ 0.79
CLN3-207ENST00000395653 MAGED4Q96JG8 741 aa19.98■□□□□ 0.79
CLN3-207ENST00000395653 FLNCQ14315 2725 aa19.97■□□□□ 0.79
CLN3-207ENST00000395653 A0A0G2JMM0 328 aa19.97■□□□□ 0.79
CLN3-207ENST00000395653 A0A1W2PPB8 328 aa19.97■□□□□ 0.79
CLN3-207ENST00000395653 A0A1W2PRS3 328 aa19.97■□□□□ 0.79
CLN3-207ENST00000395653 ANKRD33BA6NCL7 494 aa19.97■□□□□ 0.79
CLN3-207ENST00000395653 KIR3DP1A8MWS1 328 aa19.97■□□□□ 0.79
CLN3-207ENST00000395653 ABCB1P08183 1280 aaPredicted RBP19.97■□□□□ 0.79
CLN3-207ENST00000395653 CLNS1AP54105 237 aaKnown RBP19.97■□□□□ 0.79
CLN3-207ENST00000395653 RPP38P78345 283 aaKnown RBP19.97■□□□□ 0.79
CLN3-207ENST00000395653 PSG6Q00889 435 aa19.97■□□□□ 0.79
CLN3-207ENST00000395653 SRSF11Q05519 484 aaKnown RBP19.97■□□□□ 0.79
CLN3-207ENST00000395653 LSM12Q3MHD2 195 aaKnown RBP19.97■□□□□ 0.79
CLN3-207ENST00000395653 HSP90B2PQ58FF3 399 aa19.97■□□□□ 0.79
CLN3-207ENST00000395653 TBCELQ5QJ74 424 aa19.97■□□□□ 0.79
CLN3-207ENST00000395653 NUP54Q7Z3B4 507 aa19.97■□□□□ 0.79
CLN3-207ENST00000395653 SIAH3Q8IW03 269 aa19.97■□□□□ 0.79
CLN3-207ENST00000395653 OR8J2Q8NGG1 315 aa19.97■□□□□ 0.79
CLN3-207ENST00000395653 OR5M3Q8NGP4 307 aa19.97■□□□□ 0.79
CLN3-207ENST00000395653 CEP70Q8NHQ1 597 aa19.97■□□□□ 0.79
CLN3-207ENST00000395653 PSMA8Q8TAA3 256 aa19.97■□□□□ 0.79
CLN3-207ENST00000395653 SPPL2AQ8TCT8 520 aa19.97■□□□□ 0.79
CLN3-207ENST00000395653 TESCQ96BS2 214 aa19.97■□□□□ 0.79
CLN3-207ENST00000395653 CLMPQ9H6B4 373 aa19.97■□□□□ 0.79
CLN3-207ENST00000395653 C3orf14Q9HBI5 128 aa19.97■□□□□ 0.79
CLN3-207ENST00000395653 NEUROD4Q9HD90 331 aa19.97■□□□□ 0.79
CLN3-207ENST00000395653 CNOT11Q9UKZ1 510 aaKnown RBP19.97■□□□□ 0.79
CLN3-207ENST00000395653 PINLYPA6NC86 204 aa19.96■□□□□ 0.79
CLN3-207ENST00000395653 TTC36A6NLP5 189 aa19.96■□□□□ 0.79
CLN3-207ENST00000395653 G3V3Y1 287 aa19.96■□□□□ 0.79
CLN3-207ENST00000395653 EMC8O43402 210 aa19.96■□□□□ 0.79
CLN3-207ENST00000395653 ATP8B1O43520 1251 aa19.96■□□□□ 0.79
CLN3-207ENST00000395653 TGDSO95455 350 aa19.96■□□□□ 0.79
CLN3-207ENST00000395653 EFNA1P20827 205 aaPredicted RBP19.96■□□□□ 0.79
CLN3-207ENST00000395653 PIGAP37287 484 aa19.96■□□□□ 0.79
CLN3-207ENST00000395653 ZNHIT3Q15649 155 aaPredicted RBP19.96■□□□□ 0.79
CLN3-207ENST00000395653 DPY19L1Q2PZI1 675 aa19.96■□□□□ 0.79
CLN3-207ENST00000395653 KRTCAP3Q53RY4 240 aa19.96■□□□□ 0.79
CLN3-207ENST00000395653 RNFT1Q5M7Z0 435 aa19.96■□□□□ 0.79
CLN3-207ENST00000395653 EPGNQ6UW88 154 aa19.96■□□□□ 0.79
CLN3-207ENST00000395653 DIO2Q92813 273 aa19.96■□□□□ 0.79
CLN3-207ENST00000395653 GPR137Q96N19 417 aa19.96■□□□□ 0.79
CLN3-207ENST00000395653 LMF2Q9BU23 707 aaKnown RBP19.96■□□□□ 0.79
CLN3-207ENST00000395653 MED4Q9NPJ6 270 aa19.96■□□□□ 0.79
CLN3-207ENST00000395653 SIRT3Q9NTG7 399 aaPredicted RBP19.96■□□□□ 0.79
CLN3-207ENST00000395653 SEC14L3Q9UDX4 400 aa19.96■□□□□ 0.79
CLN3-207ENST00000395653 OR6C70A6NIJ9 312 aa19.95■□□□□ 0.78
CLN3-207ENST00000395653 ABCB7O75027 752 aa19.95■□□□□ 0.78
CLN3-207ENST00000395653 RFC3P40938 356 aa19.95■□□□□ 0.78
CLN3-207ENST00000395653 DNASE1L1P49184 302 aa19.95■□□□□ 0.78
CLN3-207ENST00000395653 PRR5P85299 388 aa19.95■□□□□ 0.78
CLN3-207ENST00000395653 PGS1Q32NB8 556 aa19.95■□□□□ 0.78
CLN3-207ENST00000395653 PRAMEF20Q5VT98 475 aa19.95■□□□□ 0.78
CLN3-207ENST00000395653 NXNQ6DKJ4 435 aa19.95■□□□□ 0.78
CLN3-207ENST00000395653 TMEM81Q6P7N7 255 aa19.95■□□□□ 0.78
CLN3-207ENST00000395653 BNC2Q6ZN30 1099 aaPredicted RBP19.95■□□□□ 0.78
CLN3-207ENST00000395653 SLC44A2Q8IWA5 706 aaPredicted RBP19.95■□□□□ 0.78
CLN3-207ENST00000395653 ARFGAP2Q8N6H7 521 aa19.95■□□□□ 0.78
CLN3-207ENST00000395653 NUP43Q8NFH3 380 aa19.95■□□□□ 0.78
CLN3-207ENST00000395653 TMBIM1Q969X1 311 aa19.95■□□□□ 0.78
CLN3-207ENST00000395653 SLC35A4Q96G79 324 aa19.95■□□□□ 0.78
CLN3-207ENST00000395653 MS4A4EQ96PG1 132 aa19.95■□□□□ 0.78
CLN3-207ENST00000395653 PROK2Q9HC23 129 aa19.95■□□□□ 0.78
CLN3-207ENST00000395653 GPR45Q9Y5Y3 372 aa19.95■□□□□ 0.78
CLN3-207ENST00000395653 EXPH5Q8NEV8 1989 aa19.95■□□□□ 0.78
CLN3-207ENST00000395653 GIMAP1-GIMAP5A0A087WTJ2 511 aa19.94■□□□□ 0.78
CLN3-207ENST00000395653 NPIPA5E9PKD4 350 aa19.94■□□□□ 0.78
CLN3-207ENST00000395653 ACOT7O00154 380 aa19.94■□□□□ 0.78
CLN3-207ENST00000395653 TFECO14948 347 aaPredicted RBP19.94■□□□□ 0.78
CLN3-207ENST00000395653 DIAPH2O60879 1101 aa19.94■□□□□ 0.78
CLN3-207ENST00000395653 C6orf47O95873 294 aa19.94■□□□□ 0.78
CLN3-207ENST00000395653 IDO1P14902 403 aa19.94■□□□□ 0.78
CLN3-207ENST00000395653 KIR3DL1P43629 444 aa19.94■□□□□ 0.78
CLN3-207ENST00000395653 KCNJ2P63252 427 aa19.94■□□□□ 0.78
CLN3-207ENST00000395653 FOXO1Q12778 655 aa19.94■□□□□ 0.78
CLN3-207ENST00000395653 HYAL4Q2M3T9 481 aa19.94■□□□□ 0.78
CLN3-207ENST00000395653 CYP27C1Q4G0S4 372 aa19.94■□□□□ 0.78
CLN3-207ENST00000395653 OR4F3Q6IEY1 312 aa19.94■□□□□ 0.78
CLN3-207ENST00000395653 GFRALQ6UXV0 394 aa19.94■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms