RNA–Protein interactions for RNA: ENST00000394243.5

SYNPO-202, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 7,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-202ENST00000394243 LCN10Q6JVE6 187 aa11.29□□□□□ -0.6
SYNPO-202ENST00000394243 DTWD1Q8N5C7 304 aa11.29□□□□□ -0.6
SYNPO-202ENST00000394243 NUP43Q8NFH3 380 aa11.29□□□□□ -0.6
SYNPO-202ENST00000394243 ALG8Q9BVK2 526 aa11.29□□□□□ -0.6
SYNPO-202ENST00000394243 RETREG1Q9H6L5 497 aa11.29□□□□□ -0.6
SYNPO-202ENST00000394243 KLRF1Q9NZS2 232 aa11.29□□□□□ -0.6
SYNPO-202ENST00000394243 SYN3O14994 580 aa11.29□□□□□ -0.6
SYNPO-202ENST00000394243 TXNDC12O95881 172 aa11.29□□□□□ -0.6
SYNPO-202ENST00000394243 AKAIN1P0CW23 69 aa11.29□□□□□ -0.6
SYNPO-202ENST00000394243 HOXD13P35453 343 aa11.29□□□□□ -0.6
SYNPO-202ENST00000394243 PREPP48147 710 aa11.29□□□□□ -0.6
SYNPO-202ENST00000394243 ERVK-21P61565 698 aa11.29□□□□□ -0.6
SYNPO-202ENST00000394243 GATSQ8NAP1 163 aa11.29□□□□□ -0.6
SYNPO-202ENST00000394243 TFGQ92734 400 aaPredicted RBP11.29□□□□□ -0.6
SYNPO-202ENST00000394243 OR2M2Q96R28 347 aa11.29□□□□□ -0.6
SYNPO-202ENST00000394243 ANKRD34BA5PLL1 514 aa11.29□□□□□ -0.6
SYNPO-202ENST00000394243 ANHXE9PGG2 379 aa11.29□□□□□ -0.6
SYNPO-202ENST00000394243 CTDSP2O14595 271 aa11.29□□□□□ -0.6
SYNPO-202ENST00000394243 MMP20O60882 483 aa11.29□□□□□ -0.6
SYNPO-202ENST00000394243 SLC24A5Q71RS6 500 aa11.29□□□□□ -0.6
SYNPO-202ENST00000394243 ZNF454Q8N9F8 522 aa11.29□□□□□ -0.6
SYNPO-202ENST00000394243 OR4C15Q8NGM1 316 aa11.29□□□□□ -0.6
SYNPO-202ENST00000394243 PNPLA2Q96AD5 504 aa11.29□□□□□ -0.6
SYNPO-202ENST00000394243 MOAP1Q96BY2 351 aa11.29□□□□□ -0.6
SYNPO-202ENST00000394243 SLC38A1Q9H2H9 487 aa11.29□□□□□ -0.6
SYNPO-202ENST00000394243 AGPAT4Q9NRZ5 378 aa11.29□□□□□ -0.6
SYNPO-202ENST00000394243 TMEM100Q9NV29 134 aa11.29□□□□□ -0.6
SYNPO-202ENST00000394243 ELOVL2Q9NXB9 296 aa11.29□□□□□ -0.6
SYNPO-202ENST00000394243 MANSC4A6NHS7 340 aaPredicted RBP11.29□□□□□ -0.6
SYNPO-202ENST00000394243 CRHBPP24387 322 aa11.29□□□□□ -0.6
SYNPO-202ENST00000394243 TIA1P31483 386 aaKnown RBP eCLIP11.29□□□□□ -0.6
SYNPO-202ENST00000394243 DLX5P56178 289 aa11.29□□□□□ -0.6
SYNPO-202ENST00000394243 LRRTM4Q86VH4 590 aa11.29□□□□□ -0.6
SYNPO-202ENST00000394243 NLRP8Q86W28 1048 aa11.29□□□□□ -0.6
SYNPO-202ENST00000394243 ZSCAN4Q8NAM6 433 aaPredicted RBP11.29□□□□□ -0.6
SYNPO-202ENST00000394243 OR5AK2Q8NH90 309 aa11.29□□□□□ -0.6
SYNPO-202ENST00000394243 FBXL18Q96ME1 805 aa11.29□□□□□ -0.6
SYNPO-202ENST00000394243 WDR26Q9H7D7 661 aa11.29□□□□□ -0.6
SYNPO-202ENST00000394243 NT5DC2Q9H857 520 aa11.29□□□□□ -0.6
SYNPO-202ENST00000394243 THSD1Q9NS62 852 aa11.29□□□□□ -0.6
SYNPO-202ENST00000394243 A0A1W2PQ45 241 aaPredicted RBP11.29□□□□□ -0.6
SYNPO-202ENST00000394243 A0A1W2PQY0 241 aa11.29□□□□□ -0.6
SYNPO-202ENST00000394243 A0A1W2PS29 197 aa11.29□□□□□ -0.6
SYNPO-202ENST00000394243 TSPAN11A1L157 253 aa11.29□□□□□ -0.6
SYNPO-202ENST00000394243 ACOT7O00154 380 aa11.29□□□□□ -0.6
SYNPO-202ENST00000394243 TFAP2AP05549 437 aa11.29□□□□□ -0.6
SYNPO-202ENST00000394243 GAAP10253 952 aa11.29□□□□□ -0.6
SYNPO-202ENST00000394243 BMP4P12644 408 aa11.29□□□□□ -0.6
SYNPO-202ENST00000394243 GM2AP17900 193 aa11.29□□□□□ -0.6
SYNPO-202ENST00000394243 CD9P21926 228 aa11.29□□□□□ -0.6
SYNPO-202ENST00000394243 CSNK2A1P68400 391 aaPredicted RBP11.29□□□□□ -0.6
SYNPO-202ENST00000394243 CRYZQ08257 329 aaKnown RBP11.29□□□□□ -0.6
SYNPO-202ENST00000394243 OPCMLQ14982 345 aa11.29□□□□□ -0.6
SYNPO-202ENST00000394243 CLVS2Q5SYC1 327 aa11.29□□□□□ -0.6
SYNPO-202ENST00000394243 C9orf131Q5VYM1 1079 aa11.29□□□□□ -0.6
SYNPO-202ENST00000394243 ARHGAP11AQ6P4F7 1023 aa11.29□□□□□ -0.6
SYNPO-202ENST00000394243 PGAP1Q75T13 922 aa11.29□□□□□ -0.6
SYNPO-202ENST00000394243 C6orf120Q7Z4R8 191 aa11.29□□□□□ -0.6
SYNPO-202ENST00000394243 CLECL1Q8IZS7 167 aa11.29□□□□□ -0.6
SYNPO-202ENST00000394243 CELF2-AS1Q8N7Q2 184 aa11.29□□□□□ -0.6
SYNPO-202ENST00000394243 CSNK2A3Q8NEV1 391 aa11.29□□□□□ -0.6
SYNPO-202ENST00000394243 TXLNGYQ9BZA5 131 aa11.29□□□□□ -0.6
SYNPO-202ENST00000394243 VRTNQ9H8Y1 702 aa11.29□□□□□ -0.6
SYNPO-202ENST00000394243 NMNAT1Q9HAN9 279 aaPredicted RBP11.29□□□□□ -0.6
SYNPO-202ENST00000394243 NIT2Q9NQR4 276 aa11.29□□□□□ -0.6
SYNPO-202ENST00000394243 ZNF175Q9Y473 711 aa11.29□□□□□ -0.6
SYNPO-202ENST00000394243 SMLR1H3BR10 107 aa11.28□□□□□ -0.6
SYNPO-202ENST00000394243 GABRA3P34903 492 aa11.28□□□□□ -0.6
SYNPO-202ENST00000394243 KCNQ1P51787 676 aa11.28□□□□□ -0.6
SYNPO-202ENST00000394243 TIGD5Q53EQ6 642 aa11.28□□□□□ -0.6
SYNPO-202ENST00000394243 AWAT2Q6E213 333 aa11.28□□□□□ -0.6
SYNPO-202ENST00000394243 RGMBQ6NW40 437 aa11.28□□□□□ -0.6
SYNPO-202ENST00000394243 DBF4BQ8NFT6 615 aa11.28□□□□□ -0.6
SYNPO-202ENST00000394243 OR52P1PQ8NH57 321 aa11.28□□□□□ -0.6
SYNPO-202ENST00000394243 SYNPRQ8TBG9 265 aa11.28□□□□□ -0.6
SYNPO-202ENST00000394243 CRB3Q9BUF7 120 aa11.28□□□□□ -0.6
SYNPO-202ENST00000394243 NPAP1Q9NZP6 1156 aa11.28□□□□□ -0.6
SYNPO-202ENST00000394243 GSRP00390 522 aa11.28□□□□□ -0.6
SYNPO-202ENST00000394243 PPP3CBP16298 524 aa11.28□□□□□ -0.6
SYNPO-202ENST00000394243 TRIM23P36406 574 aa11.28□□□□□ -0.6
SYNPO-202ENST00000394243 AKR1C2P52895 323 aa11.28□□□□□ -0.6
SYNPO-202ENST00000394243 CLDN8P56748 225 aa11.28□□□□□ -0.6
SYNPO-202ENST00000394243 OR52B6Q8NGF0 335 aa11.28□□□□□ -0.6
SYNPO-202ENST00000394243 SUN3Q8TAQ9 357 aa11.28□□□□□ -0.6
SYNPO-202ENST00000394243 ACOT11Q8WXI4 607 aaPredicted RBP11.28□□□□□ -0.6
SYNPO-202ENST00000394243 ACDQ96AP0 544 aa11.28□□□□□ -0.6
SYNPO-202ENST00000394243 ZBED3Q96IU2 234 aaPredicted RBP11.28□□□□□ -0.6
SYNPO-202ENST00000394243 SYT3Q9BQG1 590 aa11.28□□□□□ -0.6
SYNPO-202ENST00000394243 CARS2Q9HA77 564 aaKnown RBP11.28□□□□□ -0.6
SYNPO-202ENST00000394243 ZFP57Q9NU63 452 aa11.28□□□□□ -0.6
SYNPO-202ENST00000394243 PLEKHM1Q9Y4G2 1056 aa11.28□□□□□ -0.6
SYNPO-202ENST00000394243 BHLHE40O14503 412 aa11.28□□□□□ -0.6
SYNPO-202ENST00000394243 BRINP1O60477 761 aa11.28□□□□□ -0.6
SYNPO-202ENST00000394243 CSF1P09603 554 aa11.28□□□□□ -0.6
SYNPO-202ENST00000394243 ZDHHC11BP0C7U3 371 aa11.28□□□□□ -0.6
SYNPO-202ENST00000394243 ARAFP10398 606 aa11.28□□□□□ -0.6
SYNPO-202ENST00000394243 TAS2R20P59543 309 aa11.28□□□□□ -0.6
SYNPO-202ENST00000394243 CDK3Q00526 305 aa11.28□□□□□ -0.6
SYNPO-202ENST00000394243 MAP4K2Q12851 820 aa11.28□□□□□ -0.6
SYNPO-202ENST00000394243 OR4D1Q15615 310 aa11.28□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 49.1 ms